RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 NEXMIFQ5QGS0 1516 aa20.32■□□□□ 0.84
TRIM3-212ENST00000533064 MYOM2P54296 1465 aa20.31■□□□□ 0.84
TRIM3-212ENST00000533064 UHRF1BP1Q6BDS2 1440 aa20.3■□□□□ 0.84
TRIM3-212ENST00000533064 KIAA1210Q9ULL0 1709 aa20.27■□□□□ 0.84
TRIM3-212ENST00000533064 HDGFP51858 240 aaKnown RBP20.27■□□□□ 0.84
TRIM3-212ENST00000533064 TRPM1Q7Z4N2 1603 aa20.27■□□□□ 0.84
TRIM3-212ENST00000533064 PRAG1Q86YV5 1406 aa20.27■□□□□ 0.84
TRIM3-212ENST00000533064 VGFO15240 615 aaPredicted RBP20.26■□□□□ 0.83
TRIM3-212ENST00000533064 THEMISQ8N1K5 641 aaPredicted RBP20.26■□□□□ 0.83
TRIM3-212ENST00000533064 RIMS2Q9UQ26 1411 aa20.26■□□□□ 0.83
TRIM3-212ENST00000533064 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.24■□□□□ 0.83
TRIM3-212ENST00000533064 ZFYVE9O95405 1425 aa20.23■□□□□ 0.83
TRIM3-212ENST00000533064 NBPF8Q3BBV2 869 aa20.23■□□□□ 0.83
TRIM3-212ENST00000533064 TMEM2Q9UHN6 1383 aa20.23■□□□□ 0.83
TRIM3-212ENST00000533064 LAMC1P11047 1609 aa20.23■□□□□ 0.83
TRIM3-212ENST00000533064 SLIT1O75093 1534 aa20.23■□□□□ 0.83
TRIM3-212ENST00000533064 NRXN1Q9ULB1 1477 aa20.22■□□□□ 0.83
TRIM3-212ENST00000533064 NUTM2DQ5VT03 806 aaPredicted RBP20.22■□□□□ 0.83
TRIM3-212ENST00000533064 ADGRF5Q8IZF2 1346 aa20.21■□□□□ 0.83
TRIM3-212ENST00000533064 RALGAPBQ86X10 1494 aa20.21■□□□□ 0.83
TRIM3-212ENST00000533064 POLR1AO95602 1720 aaPredicted RBP20.2■□□□□ 0.82
TRIM3-212ENST00000533064 EID1Q9Y6B2 187 aa20.2■□□□□ 0.82
TRIM3-212ENST00000533064 ARHGAP23Q9P227 1491 aa20.19■□□□□ 0.82
TRIM3-212ENST00000533064 PIK3C2GO75747 1445 aa20.19■□□□□ 0.82
TRIM3-212ENST00000533064 ROCK2O75116 1388 aaKnown RBP20.17■□□□□ 0.82
TRIM3-212ENST00000533064 IQGAP1P46940 1657 aa20.16■□□□□ 0.82
TRIM3-212ENST00000533064 TXNDC2Q86VQ3 553 aa20.16■□□□□ 0.82
TRIM3-212ENST00000533064 SCAF11Q99590 1463 aaKnown RBP20.14■□□□□ 0.81
TRIM3-212ENST00000533064 SETBP1Q9Y6X0 1596 aa20.13■□□□□ 0.81
TRIM3-212ENST00000533064 BCANQ96GW7 911 aa20.13■□□□□ 0.81
TRIM3-212ENST00000533064 NRXN3Q9Y4C0 1643 aa20.12■□□□□ 0.81
TRIM3-212ENST00000533064 ANKLE2Q86XL3 938 aa20.12■□□□□ 0.81
TRIM3-212ENST00000533064 CARD11Q9BXL7 1154 aa20.12■□□□□ 0.81
TRIM3-212ENST00000533064 ALKQ9UM73 1620 aa20.12■□□□□ 0.81
TRIM3-212ENST00000533064 SETD1AO15047 1707 aaKnown RBP20.11■□□□□ 0.81
TRIM3-212ENST00000533064 LTKP29376 864 aa20.11■□□□□ 0.81
TRIM3-212ENST00000533064 CFAP70Q5T0N1 1121 aa20.11■□□□□ 0.81
TRIM3-212ENST00000533064 C14orf93Q9H972 538 aaKnown RBP20.11■□□□□ 0.81
TRIM3-212ENST00000533064 PLEKHG1Q9ULL1 1385 aa20.11■□□□□ 0.81
TRIM3-212ENST00000533064 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
TRIM3-212ENST00000533064 GPRASP1Q5JY77 1395 aa20.1■□□□□ 0.81
TRIM3-212ENST00000533064 NBPF1Q3BBV0 1214 aa20.09■□□□□ 0.81
TRIM3-212ENST00000533064 LMTK3Q96Q04 1460 aa20.08■□□□□ 0.81
TRIM3-212ENST00000533064 DIP2AQ14689 1571 aa20.07■□□□□ 0.8
TRIM3-212ENST00000533064 EIF4G2P78344 907 aaKnown RBP eCLIP20.07■□□□□ 0.8
TRIM3-212ENST00000533064 ADGRB1O14514 1584 aa20.05■□□□□ 0.8
TRIM3-212ENST00000533064 ZNF316A6NFI3 1004 aaPredicted RBP20.04■□□□□ 0.8
TRIM3-212ENST00000533064 USP47Q96K76 1375 aa20.04■□□□□ 0.8
TRIM3-212ENST00000533064 MED14O60244 1454 aa20.02■□□□□ 0.79
TRIM3-212ENST00000533064 ARHGEF28Q8N1W1 1705 aaKnown RBP20.01■□□□□ 0.79
TRIM3-212ENST00000533064 TMEM132EQ6IEE7 984 aa20.01■□□□□ 0.79
TRIM3-212ENST00000533064 EIF3AQ14152 1382 aaKnown RBP20.01■□□□□ 0.79
TRIM3-212ENST00000533064 ADAMTS13Q76LX8 1427 aa20.01■□□□□ 0.79
TRIM3-212ENST00000533064 ASXL1Q8IXJ9 1541 aa20.01■□□□□ 0.79
TRIM3-212ENST00000533064 STRCQ7RTU9 1775 aa20.01■□□□□ 0.79
TRIM3-212ENST00000533064 HSPA2P54652 639 aa20■□□□□ 0.79
TRIM3-212ENST00000533064 NPHP4O75161 1426 aaPredicted RBP20■□□□□ 0.79
TRIM3-212ENST00000533064 KNDC1Q76NI1 1749 aa20■□□□□ 0.79
TRIM3-212ENST00000533064 HSPA5P11021 654 aaKnown RBP20■□□□□ 0.79
TRIM3-212ENST00000533064 NCKAP5LQ9HCH0 1330 aa19.99■□□□□ 0.79
TRIM3-212ENST00000533064 CHD2O14647 1828 aaKnown RBP19.98■□□□□ 0.79
TRIM3-212ENST00000533064 SLC26A8Q96RN1 970 aa19.98■□□□□ 0.79
TRIM3-212ENST00000533064 TBX22Q9Y458 520 aa19.98■□□□□ 0.79
TRIM3-212ENST00000533064 YTHDC2Q9H6S0 1430 aaKnown RBP19.98■□□□□ 0.79
TRIM3-212ENST00000533064 QRICH2Q9H0J4 1663 aa19.96■□□□□ 0.79
TRIM3-212ENST00000533064 TRAK1Q9UPV9 953 aa19.96■□□□□ 0.79
TRIM3-212ENST00000533064 METP08581 1390 aa19.95■□□□□ 0.78
TRIM3-212ENST00000533064 HIRIP3Q9BW71 556 aaPredicted RBP19.95■□□□□ 0.78
TRIM3-212ENST00000533064 STK26Q9P289 416 aa19.94■□□□□ 0.78
TRIM3-212ENST00000533064 ST20-MTHFSA0A0A6YYL1 179 aa19.94■□□□□ 0.78
TRIM3-212ENST00000533064 LRPPRCP42704 1394 aaKnown RBP19.93■□□□□ 0.78
TRIM3-212ENST00000533064 PIK3R4Q99570 1358 aa19.93■□□□□ 0.78
TRIM3-212ENST00000533064 DLC1Q96QB1 1528 aa19.92■□□□□ 0.78
TRIM3-212ENST00000533064 AEBP2Q6ZN18 517 aaPredicted RBP19.91■□□□□ 0.78
TRIM3-212ENST00000533064 CPS1P31327 1500 aa19.91■□□□□ 0.78
TRIM3-212ENST00000533064 ABCC11Q96J66 1382 aa19.9■□□□□ 0.78
TRIM3-212ENST00000533064 XRN1Q8IZH2 1706 aaKnown RBP19.9■□□□□ 0.78
TRIM3-212ENST00000533064 CENPJQ9HC77 1338 aaPredicted RBP19.89■□□□□ 0.78
TRIM3-212ENST00000533064 SLC24A1O60721 1099 aa19.88■□□□□ 0.77
TRIM3-212ENST00000533064 TECPR2O15040 1411 aa19.88■□□□□ 0.77
TRIM3-212ENST00000533064 POGKQ9P215 609 aa19.87■□□□□ 0.77
TRIM3-212ENST00000533064 AMOTL2Q9Y2J4 779 aa19.87■□□□□ 0.77
TRIM3-212ENST00000533064 PTPRUQ92729 1446 aa19.86■□□□□ 0.77
TRIM3-212ENST00000533064 FAM135BQ49AJ0 1406 aa19.85■□□□□ 0.77
TRIM3-212ENST00000533064 SIRT1Q96EB6 747 aa19.84■□□□□ 0.77
TRIM3-212ENST00000533064 PRAM1Q96QH2 718 aa19.84■□□□□ 0.77
TRIM3-212ENST00000533064 DMRT2Q9Y5R5 561 aa19.84■□□□□ 0.77
TRIM3-212ENST00000533064 SBNO2Q9Y2G9 1366 aa19.84■□□□□ 0.77
TRIM3-212ENST00000533064 NWD1Q149M9 1564 aa19.84■□□□□ 0.77
TRIM3-212ENST00000533064 PTCH1Q13635 1447 aa19.83■□□□□ 0.77
TRIM3-212ENST00000533064 TMF1P82094 1093 aa19.83■□□□□ 0.76
TRIM3-212ENST00000533064 DIEXFQ68CQ4 756 aaKnown RBP19.83■□□□□ 0.76
TRIM3-212ENST00000533064 SAFB2Q14151 953 aaKnown RBP eCLIP19.82■□□□□ 0.76
TRIM3-212ENST00000533064 TESK2Q96S53 571 aa19.82■□□□□ 0.76
TRIM3-212ENST00000533064 KCNA6P17658 529 aa19.81■□□□□ 0.76
TRIM3-212ENST00000533064 STRCP1A6NGW2 1772 aa19.8■□□□□ 0.76
TRIM3-212ENST00000533064 WAPLQ7Z5K2 1190 aa19.8■□□□□ 0.76
TRIM3-212ENST00000533064 ROBO2Q9HCK4 1378 aa19.8■□□□□ 0.76
TRIM3-212ENST00000533064 CDCA8Q53HL2 280 aa19.79■□□□□ 0.76
TRIM3-212ENST00000533064 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms