RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	EID1	Q9Y6B2	187 aa		13.59	□□□□□ -0.23
NXF1-209	ENST00000531474	MYO5B	Q9ULV0	1848 aa		13.59	□□□□□ -0.23
NXF1-209	ENST00000531474	NCKAP5L	Q9HCH0	1330 aa		13.59	□□□□□ -0.23
NXF1-209	ENST00000531474	PPP1R15A	O75807	674 aa	Predicted RBP	13.58	□□□□□ -0.24
NXF1-209	ENST00000531474	NEUROD1	Q13562	356 aa		13.58	□□□□□ -0.24
NXF1-209	ENST00000531474	TXNDC2	Q86VQ3	553 aa		13.58	□□□□□ -0.24
NXF1-209	ENST00000531474	SIN3A	Q96ST3	1273 aa		13.58	□□□□□ -0.24
NXF1-209	ENST00000531474	SCAF11	Q99590	1463 aa	Known RBP	13.58	□□□□□ -0.24
NXF1-209	ENST00000531474	ZFYVE9	O95405	1425 aa		13.57	□□□□□ -0.24
NXF1-209	ENST00000531474	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.57	□□□□□ -0.24
NXF1-209	ENST00000531474	LTK	P29376	864 aa		13.56	□□□□□ -0.24
NXF1-209	ENST00000531474	HDGF	P51858	240 aa	Known RBP	13.56	□□□□□ -0.24
NXF1-209	ENST00000531474	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
NXF1-209	ENST00000531474	NEURL4	Q96JN8	1562 aa		13.56	□□□□□ -0.24
NXF1-209	ENST00000531474	NEXMIF	Q5QGS0	1516 aa		13.55	□□□□□ -0.24
NXF1-209	ENST00000531474	RPGRIP1L	Q68CZ1	1315 aa		13.55	□□□□□ -0.24
NXF1-209	ENST00000531474	POLR1A	O95602	1720 aa	Predicted RBP	13.55	□□□□□ -0.24
NXF1-209	ENST00000531474	BCAN	Q96GW7	911 aa		13.54	□□□□□ -0.24
NXF1-209	ENST00000531474	NPHP4	O75161	1426 aa	Predicted RBP	13.54	□□□□□ -0.24
NXF1-209	ENST00000531474	STRC	Q7RTU9	1775 aa		13.53	□□□□□ -0.24
NXF1-209	ENST00000531474	MED14	O60244	1454 aa		13.51	□□□□□ -0.25
NXF1-209	ENST00000531474	PLEKHG1	Q9ULL1	1385 aa		13.51	□□□□□ -0.25
NXF1-209	ENST00000531474	VGF	O15240	615 aa	Predicted RBP	13.51	□□□□□ -0.25
NXF1-209	ENST00000531474	DMRT2	Q9Y5R5	561 aa		13.51	□□□□□ -0.25
NXF1-209	ENST00000531474	PPL	O60437	1756 aa		13.5	□□□□□ -0.25
NXF1-209	ENST00000531474	DIEXF	Q68CQ4	756 aa	Known RBP	13.5	□□□□□ -0.25
NXF1-209	ENST00000531474	KDM2A	Q9Y2K7	1162 aa		13.5	□□□□□ -0.25
NXF1-209	ENST00000531474	IQGAP1	P46940	1657 aa		13.5	□□□□□ -0.25
NXF1-209	ENST00000531474	TONSL	Q96HA7	1378 aa		13.49	□□□□□ -0.25
NXF1-209	ENST00000531474	ADGRF5	Q8IZF2	1346 aa		13.49	□□□□□ -0.25
NXF1-209	ENST00000531474	DCAF11	Q8TEB1	546 aa		13.49	□□□□□ -0.25
NXF1-209	ENST00000531474	IFT172	Q9UG01	1749 aa		13.49	□□□□□ -0.25
NXF1-209	ENST00000531474	MYOM2	P54296	1465 aa		13.48	□□□□□ -0.25
NXF1-209	ENST00000531474	L3MBTL2	Q969R5	705 aa		13.48	□□□□□ -0.25
NXF1-209	ENST00000531474	SLC26A8	Q96RN1	970 aa		13.47	□□□□□ -0.25
NXF1-209	ENST00000531474	SETBP1	Q9Y6X0	1596 aa		13.46	□□□□□ -0.25
NXF1-209	ENST00000531474	NRXN3	Q9Y4C0	1643 aa		13.45	□□□□□ -0.26
NXF1-209	ENST00000531474	PIK3C2G	O75747	1445 aa		13.45	□□□□□ -0.26
NXF1-209	ENST00000531474	ADAMTS13	Q76LX8	1427 aa		13.45	□□□□□ -0.26
NXF1-209	ENST00000531474	NRXN1	Q9ULB1	1477 aa		13.44	□□□□□ -0.26
NXF1-209	ENST00000531474	STAC3	Q96MF2	364 aa		13.44	□□□□□ -0.26
NXF1-209	ENST00000531474	DIP2A	Q14689	1571 aa		13.44	□□□□□ -0.26
NXF1-209	ENST00000531474	TBX22	Q9Y458	520 aa		13.43	□□□□□ -0.26
NXF1-209	ENST00000531474	ALK	Q9UM73	1620 aa		13.42	□□□□□ -0.26
NXF1-209	ENST00000531474	PRAG1	Q86YV5	1406 aa		13.41	□□□□□ -0.26
NXF1-209	ENST00000531474	CFAP70	Q5T0N1	1121 aa		13.41	□□□□□ -0.26
NXF1-209	ENST00000531474	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.4	□□□□□ -0.26
NXF1-209	ENST00000531474	MET	P08581	1390 aa		13.4	□□□□□ -0.26
NXF1-209	ENST00000531474	C14orf93	Q9H972	538 aa	Known RBP	13.39	□□□□□ -0.27
NXF1-209	ENST00000531474	LAMC1	P11047	1609 aa		13.39	□□□□□ -0.27
NXF1-209	ENST00000531474	PIK3R4	Q99570	1358 aa		13.38	□□□□□ -0.27
NXF1-209	ENST00000531474	SETD1A	O15047	1707 aa	Known RBP	13.38	□□□□□ -0.27
NXF1-209	ENST00000531474	TMEM132E	Q6IEE7	984 aa		13.37	□□□□□ -0.27
NXF1-209	ENST00000531474	ASXL1	Q8IXJ9	1541 aa		13.37	□□□□□ -0.27
NXF1-209	ENST00000531474	KCNA6	P17658	529 aa		13.36	□□□□□ -0.27
NXF1-209	ENST00000531474	NBPF8	Q3BBV2	869 aa		13.36	□□□□□ -0.27
NXF1-209	ENST00000531474	PTPRU	Q92729	1446 aa		13.36	□□□□□ -0.27
NXF1-209	ENST00000531474	NWD1	Q149M9	1564 aa		13.36	□□□□□ -0.27
NXF1-209	ENST00000531474	STK26	Q9P289	416 aa		13.35	□□□□□ -0.27
NXF1-209	ENST00000531474	AMOTL2	Q9Y2J4	779 aa		13.35	□□□□□ -0.27
NXF1-209	ENST00000531474	NKTR	P30414	1462 aa	Known RBP	13.34	□□□□□ -0.27
NXF1-209	ENST00000531474	CPS1	P31327	1500 aa		13.34	□□□□□ -0.27
NXF1-209	ENST00000531474	LRPPRC	P42704	1394 aa	Known RBP	13.33	□□□□□ -0.27
NXF1-209	ENST00000531474	XRN1	Q8IZH2	1706 aa	Known RBP	13.33	□□□□□ -0.27
NXF1-209	ENST00000531474	ADGRB1	O14514	1584 aa		13.33	□□□□□ -0.28
NXF1-209	ENST00000531474	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.33	□□□□□ -0.28
NXF1-209	ENST00000531474	LTBP4	Q8N2S1	1624 aa		13.33	□□□□□ -0.28
NXF1-209	ENST00000531474	NBPF1	Q3BBV0	1214 aa		13.33	□□□□□ -0.28
NXF1-209	ENST00000531474	KIAA1210	Q9ULL0	1709 aa		13.33	□□□□□ -0.28
NXF1-209	ENST00000531474	ROCK2	O75116	1388 aa	Known RBP	13.32	□□□□□ -0.28
NXF1-209	ENST00000531474	STRCP1	A6NGW2	1772 aa		13.32	□□□□□ -0.28
NXF1-209	ENST00000531474	CHD2	O14647	1828 aa	Known RBP	13.32	□□□□□ -0.28
NXF1-209	ENST00000531474	TRPM1	Q7Z4N2	1603 aa		13.32	□□□□□ -0.28
NXF1-209	ENST00000531474	PROSER2	Q86WR7	435 aa	Predicted RBP	13.32	□□□□□ -0.28
NXF1-209	ENST00000531474	RALGAPB	Q86X10	1494 aa		13.31	□□□□□ -0.28
NXF1-209	ENST00000531474	PTCH1	Q13635	1447 aa		13.3	□□□□□ -0.28
NXF1-209	ENST00000531474	LRRC7	Q96NW7	1537 aa		13.3	□□□□□ -0.28
NXF1-209	ENST00000531474	RBM33	Q96EV2	1170 aa	Known RBP	13.3	□□□□□ -0.28
NXF1-209	ENST00000531474	ABCC11	Q96J66	1382 aa		13.3	□□□□□ -0.28
NXF1-209	ENST00000531474	ROBO2	Q9HCK4	1378 aa		13.3	□□□□□ -0.28
NXF1-209	ENST00000531474	TRAK1	Q9UPV9	953 aa		13.29	□□□□□ -0.28
NXF1-209	ENST00000531474	TMEM94	Q12767	1356 aa		13.29	□□□□□ -0.28
NXF1-209	ENST00000531474	TECPR2	O15040	1411 aa		13.29	□□□□□ -0.28
NXF1-209	ENST00000531474	C14orf37	Q86TY3	774 aa		13.28	□□□□□ -0.28
NXF1-209	ENST00000531474	KNDC1	Q76NI1	1749 aa		13.27	□□□□□ -0.28
NXF1-209	ENST00000531474	CARD11	Q9BXL7	1154 aa		13.27	□□□□□ -0.29
NXF1-209	ENST00000531474	GPRASP1	Q5JY77	1395 aa		13.27	□□□□□ -0.29
NXF1-209	ENST00000531474	WAPL	Q7Z5K2	1190 aa		13.26	□□□□□ -0.29
NXF1-209	ENST00000531474	CERK	Q8TCT0	537 aa		13.26	□□□□□ -0.29
NXF1-209	ENST00000531474	DLC1	Q96QB1	1528 aa		13.26	□□□□□ -0.29
NXF1-209	ENST00000531474	PRAM1	Q96QH2	718 aa		13.26	□□□□□ -0.29
NXF1-209	ENST00000531474	POGK	Q9P215	609 aa		13.26	□□□□□ -0.29
NXF1-209	ENST00000531474	PLEKHH1	Q9ULM0	1364 aa		13.26	□□□□□ -0.29
NXF1-209	ENST00000531474	FAM135B	Q49AJ0	1406 aa		13.25	□□□□□ -0.29
NXF1-209	ENST00000531474	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
NXF1-209	ENST00000531474	SIRT1	Q96EB6	747 aa		13.24	□□□□□ -0.29
NXF1-209	ENST00000531474	MSH6	P52701	1360 aa		13.23	□□□□□ -0.29
NXF1-209	ENST00000531474	EIF3A	Q14152	1382 aa	Known RBP	13.23	□□□□□ -0.29
NXF1-209	ENST00000531474	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.23	□□□□□ -0.29
NXF1-209	ENST00000531474	IQSEC2	Q5JU85	1478 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms