RNA–Protein interactions for RNA: ENST00000531336.1

SMPD1-206, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-206ENST00000531336 PPLO60437 1756 aa20.24■□□□□ 0.83
SMPD1-206ENST00000531336 LTKP29376 864 aa20.24■□□□□ 0.83
SMPD1-206ENST00000531336 TXNDC2Q86VQ3 553 aa20.24■□□□□ 0.83
SMPD1-206ENST00000531336 EID1Q9Y6B2 187 aa20.24■□□□□ 0.83
SMPD1-206ENST00000531336 NPHP4O75161 1426 aaPredicted RBP20.24■□□□□ 0.83
SMPD1-206ENST00000531336 SPATA31E1Q6ZUB1 1445 aa20.23■□□□□ 0.83
SMPD1-206ENST00000531336 IFT172Q9UG01 1749 aa20.23■□□□□ 0.83
SMPD1-206ENST00000531336 MED14O60244 1454 aa20.23■□□□□ 0.83
SMPD1-206ENST00000531336 PPP1R15AO75807 674 aaPredicted RBP20.21■□□□□ 0.83
SMPD1-206ENST00000531336 NUTM2DQ5VT03 806 aaPredicted RBP20.21■□□□□ 0.83
SMPD1-206ENST00000531336 RGL3Q3MIN7 710 aa20.19■□□□□ 0.82
SMPD1-206ENST00000531336 SENP3Q9H4L4 574 aaPredicted RBP20.19■□□□□ 0.82
SMPD1-206ENST00000531336 DMRT2Q9Y5R5 561 aa20.19■□□□□ 0.82
SMPD1-206ENST00000531336 HDGFP51858 240 aaKnown RBP20.18■□□□□ 0.82
SMPD1-206ENST00000531336 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.18■□□□□ 0.82
SMPD1-206ENST00000531336 PLEKHG1Q9ULL1 1385 aa20.16■□□□□ 0.82
SMPD1-206ENST00000531336 RPGRIP1LQ68CZ1 1315 aa20.14■□□□□ 0.81
SMPD1-206ENST00000531336 BCANQ96GW7 911 aa20.14■□□□□ 0.81
SMPD1-206ENST00000531336 NRXN3Q9Y4C0 1643 aa20.13■□□□□ 0.81
SMPD1-206ENST00000531336 SETBP1Q9Y6X0 1596 aa20.12■□□□□ 0.81
SMPD1-206ENST00000531336 SIN3AQ96ST3 1273 aa20.12■□□□□ 0.81
SMPD1-206ENST00000531336 DIP2AQ14689 1571 aa20.11■□□□□ 0.81
SMPD1-206ENST00000531336 NEUROD1Q13562 356 aa20.1■□□□□ 0.81
SMPD1-206ENST00000531336 VGFO15240 615 aaPredicted RBP20.09■□□□□ 0.81
SMPD1-206ENST00000531336 SLC26A8Q96RN1 970 aa20.09■□□□□ 0.81
SMPD1-206ENST00000531336 MYOM2P54296 1465 aa20.09■□□□□ 0.81
SMPD1-206ENST00000531336 ADAMTS13Q76LX8 1427 aa20.08■□□□□ 0.8
SMPD1-206ENST00000531336 SETD1AO15047 1707 aaKnown RBP20.07■□□□□ 0.8
SMPD1-206ENST00000531336 STRCP1A6NGW2 1772 aa20.07■□□□□ 0.8
SMPD1-206ENST00000531336 ADGRF5Q8IZF2 1346 aa20.06■□□□□ 0.8
SMPD1-206ENST00000531336 ZNF335Q9H4Z2 1342 aaPredicted RBP20.06■□□□□ 0.8
SMPD1-206ENST00000531336 DCAF11Q8TEB1 546 aa20.04■□□□□ 0.8
SMPD1-206ENST00000531336 ALKQ9UM73 1620 aa20.04■□□□□ 0.8
SMPD1-206ENST00000531336 PIK3C2GO75747 1445 aa20.03■□□□□ 0.8
SMPD1-206ENST00000531336 LTBP4Q8N2S1 1624 aa20.03■□□□□ 0.8
SMPD1-206ENST00000531336 CCER1Q8TC90 406 aaPredicted RBP20.03■□□□□ 0.8
SMPD1-206ENST00000531336 KDM2AQ9Y2K7 1162 aa20.03■□□□□ 0.8
SMPD1-206ENST00000531336 CHD2O14647 1828 aaKnown RBP20.03■□□□□ 0.8
SMPD1-206ENST00000531336 NRXN1Q9ULB1 1477 aa20.03■□□□□ 0.8
SMPD1-206ENST00000531336 LAMC1P11047 1609 aa20.02■□□□□ 0.8
SMPD1-206ENST00000531336 NWD1Q149M9 1564 aa20.02■□□□□ 0.8
SMPD1-206ENST00000531336 TBX22Q9Y458 520 aa20.01■□□□□ 0.79
SMPD1-206ENST00000531336 TONSLQ96HA7 1378 aa19.98■□□□□ 0.79
SMPD1-206ENST00000531336 CPS1P31327 1500 aa19.98■□□□□ 0.79
SMPD1-206ENST00000531336 CLSPNQ9HAW4 1339 aa19.98■□□□□ 0.79
SMPD1-206ENST00000531336 METP08581 1390 aa19.97■□□□□ 0.79
SMPD1-206ENST00000531336 XRN1Q8IZH2 1706 aaKnown RBP19.97■□□□□ 0.79
SMPD1-206ENST00000531336 L3MBTL2Q969R5 705 aa19.97■□□□□ 0.79
SMPD1-206ENST00000531336 ASXL1Q8IXJ9 1541 aa19.97■□□□□ 0.79
SMPD1-206ENST00000531336 PIK3R4Q99570 1358 aa19.96■□□□□ 0.79
SMPD1-206ENST00000531336 PTPRUQ92729 1446 aa19.95■□□□□ 0.78
SMPD1-206ENST00000531336 NKTRP30414 1462 aaKnown RBP19.95■□□□□ 0.78
SMPD1-206ENST00000531336 KCNA6P17658 529 aa19.94■□□□□ 0.78
SMPD1-206ENST00000531336 STAC3Q96MF2 364 aa19.94■□□□□ 0.78
SMPD1-206ENST00000531336 PRAG1Q86YV5 1406 aa19.93■□□□□ 0.78
SMPD1-206ENST00000531336 KIAA1210Q9ULL0 1709 aa19.93■□□□□ 0.78
SMPD1-206ENST00000531336 XIRP1Q702N8 1843 aaKnown RBP19.92■□□□□ 0.78
SMPD1-206ENST00000531336 CFAP70Q5T0N1 1121 aa19.92■□□□□ 0.78
SMPD1-206ENST00000531336 LRRC7Q96NW7 1537 aa19.92■□□□□ 0.78
SMPD1-206ENST00000531336 C14orf93Q9H972 538 aaKnown RBP19.91■□□□□ 0.78
SMPD1-206ENST00000531336 KNDC1Q76NI1 1749 aa19.9■□□□□ 0.78
SMPD1-206ENST00000531336 AMOTL2Q9Y2J4 779 aa19.9■□□□□ 0.78
SMPD1-206ENST00000531336 TRPM1Q7Z4N2 1603 aa19.89■□□□□ 0.77
SMPD1-206ENST00000531336 ADGRB1O14514 1584 aa19.88■□□□□ 0.77
SMPD1-206ENST00000531336 TMEM132EQ6IEE7 984 aa19.88■□□□□ 0.77
SMPD1-206ENST00000531336 CERKQ8TCT0 537 aa19.88■□□□□ 0.77
SMPD1-206ENST00000531336 YTHDC2Q9H6S0 1430 aaKnown RBP19.86■□□□□ 0.77
SMPD1-206ENST00000531336 PROSER2Q86WR7 435 aaPredicted RBP19.86■□□□□ 0.77
SMPD1-206ENST00000531336 ILDR1Q86SU0 546 aaPredicted RBP19.85■□□□□ 0.77
SMPD1-206ENST00000531336 RBM33Q96EV2 1170 aaKnown RBP19.85■□□□□ 0.77
SMPD1-206ENST00000531336 STK26Q9P289 416 aa19.85■□□□□ 0.77
SMPD1-206ENST00000531336 IQSEC2Q5JU85 1478 aa19.85■□□□□ 0.77
SMPD1-206ENST00000531336 PTCH1Q13635 1447 aa19.85■□□□□ 0.77
SMPD1-206ENST00000531336 LRPPRCP42704 1394 aaKnown RBP19.84■□□□□ 0.77
SMPD1-206ENST00000531336 TMEM94Q12767 1356 aa19.84■□□□□ 0.77
SMPD1-206ENST00000531336 ROBO2Q9HCK4 1378 aa19.83■□□□□ 0.76
SMPD1-206ENST00000531336 NALCNQ8IZF0 1738 aa19.82■□□□□ 0.76
SMPD1-206ENST00000531336 TECPR2O15040 1411 aa19.82■□□□□ 0.76
SMPD1-206ENST00000531336 NBPF8Q3BBV2 869 aa19.81■□□□□ 0.76
SMPD1-206ENST00000531336 ARHGEF28Q8N1W1 1705 aaKnown RBP19.81■□□□□ 0.76
SMPD1-206ENST00000531336 ABCC11Q96J66 1382 aa19.8■□□□□ 0.76
SMPD1-206ENST00000531336 NBPF1Q3BBV0 1214 aa19.79■□□□□ 0.76
SMPD1-206ENST00000531336 DLC1Q96QB1 1528 aa19.78■□□□□ 0.76
SMPD1-206ENST00000531336 C14orf37Q86TY3 774 aa19.78■□□□□ 0.76
SMPD1-206ENST00000531336 ROCK2O75116 1388 aaKnown RBP19.78■□□□□ 0.76
SMPD1-206ENST00000531336 RALGAPBQ86X10 1494 aa19.78■□□□□ 0.76
SMPD1-206ENST00000531336 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.77■□□□□ 0.76
SMPD1-206ENST00000531336 TIMELESSQ9UNS1 1208 aa19.77■□□□□ 0.76
SMPD1-206ENST00000531336 NCOA3Q9Y6Q9 1424 aa19.76■□□□□ 0.75
SMPD1-206ENST00000531336 MSH6P52701 1360 aa19.76■□□□□ 0.75
SMPD1-206ENST00000531336 TRAK1Q9UPV9 953 aa19.76■□□□□ 0.75
SMPD1-206ENST00000531336 PLEKHH1Q9ULM0 1364 aa19.75■□□□□ 0.75
SMPD1-206ENST00000531336 FAM135BQ49AJ0 1406 aa19.75■□□□□ 0.75
SMPD1-206ENST00000531336 ADGRL3Q9HAR2 1447 aa19.75■□□□□ 0.75
SMPD1-206ENST00000531336 WAPLQ7Z5K2 1190 aa19.74■□□□□ 0.75
SMPD1-206ENST00000531336 PRAM1Q96QH2 718 aa19.72■□□□□ 0.75
SMPD1-206ENST00000531336 UBAP1LF5GYI3 381 aa19.71■□□□□ 0.75
SMPD1-206ENST00000531336 SAFB2Q14151 953 aaKnown RBP eCLIP19.71■□□□□ 0.75
SMPD1-206ENST00000531336 GPRASP1Q5JY77 1395 aa19.7■□□□□ 0.74
SMPD1-206ENST00000531336 POGKQ9P215 609 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms