RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 KCNA6P17658 529 aa24.13■■□□□ 1.45
CPSF1-205ENST00000531042 NUP155O75694 1391 aa24.12■■□□□ 1.45
CPSF1-205ENST00000531042 RIMS2Q9UQ26 1411 aa24.1■■□□□ 1.45
CPSF1-205ENST00000531042 HDGFP51858 240 aaKnown RBP24.09■■□□□ 1.45
CPSF1-205ENST00000531042 BCANQ96GW7 911 aa24.09■■□□□ 1.45
CPSF1-205ENST00000531042 TMEM94Q12767 1356 aa24.08■■□□□ 1.45
CPSF1-205ENST00000531042 PLEKHG1Q9ULL1 1385 aa24.08■■□□□ 1.45
CPSF1-205ENST00000531042 SOCS7O14512 581 aa24.08■■□□□ 1.45
CPSF1-205ENST00000531042 NWD1Q149M9 1564 aa24.08■■□□□ 1.44
CPSF1-205ENST00000531042 MED1Q15648 1581 aaPredicted RBP24.08■■□□□ 1.44
CPSF1-205ENST00000531042 CHGAP10645 457 aaKnown RBP24.07■■□□□ 1.44
CPSF1-205ENST00000531042 PPP1R15AO75807 674 aaPredicted RBP24.06■■□□□ 1.44
CPSF1-205ENST00000531042 PROSER2Q86WR7 435 aaPredicted RBP24.06■■□□□ 1.44
CPSF1-205ENST00000531042 RRBP1Q9P2E9 1410 aaKnown RBP24.06■■□□□ 1.44
CPSF1-205ENST00000531042 SENP3Q9H4L4 574 aaPredicted RBP24.05■■□□□ 1.44
CPSF1-205ENST00000531042 NKTRP30414 1462 aaKnown RBP24.05■■□□□ 1.44
CPSF1-205ENST00000531042 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.04■■□□□ 1.44
CPSF1-205ENST00000531042 CHD2O14647 1828 aaKnown RBP24.03■■□□□ 1.44
CPSF1-205ENST00000531042 RBM33Q96EV2 1170 aaKnown RBP24.02■■□□□ 1.44
CPSF1-205ENST00000531042 FAM135BQ49AJ0 1406 aa24■■□□□ 1.43
CPSF1-205ENST00000531042 NUTM2DQ5VT03 806 aaPredicted RBP23.99■■□□□ 1.43
CPSF1-205ENST00000531042 TBX22Q9Y458 520 aa23.99■■□□□ 1.43
CPSF1-205ENST00000531042 SPHKAPQ2M3C7 1700 aa23.98■■□□□ 1.43
CPSF1-205ENST00000531042 ADAMTS13Q76LX8 1427 aa23.96■■□□□ 1.43
CPSF1-205ENST00000531042 NAIPQ13075 1403 aa23.95■■□□□ 1.42
CPSF1-205ENST00000531042 DIP2AQ14689 1571 aa23.95■■□□□ 1.42
CPSF1-205ENST00000531042 MSH6P52701 1360 aa23.93■■□□□ 1.42
CPSF1-205ENST00000531042 ROBO1Q9Y6N7 1651 aa23.93■■□□□ 1.42
CPSF1-205ENST00000531042 PIK3R4Q99570 1358 aa23.91■■□□□ 1.42
CPSF1-205ENST00000531042 PHF23Q9BUL5 403 aaPredicted RBP23.89■■□□□ 1.41
CPSF1-205ENST00000531042 NCOA3Q9Y6Q9 1424 aa23.89■■□□□ 1.41
CPSF1-205ENST00000531042 TRPM2O94759 1503 aa23.88■■□□□ 1.41
CPSF1-205ENST00000531042 SLAIN2Q9P270 581 aa23.87■■□□□ 1.41
CPSF1-205ENST00000531042 HFM1A2PYH4 1435 aa23.86■■□□□ 1.41
CPSF1-205ENST00000531042 CLTCL1P53675 1640 aa23.86■■□□□ 1.41
CPSF1-205ENST00000531042 ZNF326Q5BKZ1 582 aaKnown RBP23.85■■□□□ 1.41
CPSF1-205ENST00000531042 NRXN3Q9Y4C0 1643 aa23.84■■□□□ 1.41
CPSF1-205ENST00000531042 SETBP1Q9Y6X0 1596 aa23.84■■□□□ 1.41
CPSF1-205ENST00000531042 PTPRUQ92729 1446 aa23.84■■□□□ 1.41
CPSF1-205ENST00000531042 AMOTL2Q9Y2J4 779 aa23.83■■□□□ 1.41
CPSF1-205ENST00000531042 C14orf37Q86TY3 774 aa23.81■■□□□ 1.4
CPSF1-205ENST00000531042 TRIM52Q96A61 297 aa23.81■■□□□ 1.4
CPSF1-205ENST00000531042 KIF1BO60333 1816 aa23.81■■□□□ 1.4
CPSF1-205ENST00000531042 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.81■■□□□ 1.4
CPSF1-205ENST00000531042 NEXMIFQ5QGS0 1516 aa23.79■■□□□ 1.4
CPSF1-205ENST00000531042 C19orf44Q9H6X5 657 aa23.79■■□□□ 1.4
CPSF1-205ENST00000531042 PHLPP1O60346 1717 aa23.79■■□□□ 1.4
CPSF1-205ENST00000531042 XRN1Q8IZH2 1706 aaKnown RBP23.78■■□□□ 1.4
CPSF1-205ENST00000531042 CADPS2Q86UW7 1296 aa23.77■■□□□ 1.4
CPSF1-205ENST00000531042 ATF3P18847 181 aa23.75■■□□□ 1.39
CPSF1-205ENST00000531042 SLC4A1APQ9BWU0 796 aaKnown RBP23.75■■□□□ 1.39
CPSF1-205ENST00000531042 RGS17Q9UGC6 210 aaPredicted RBP23.75■■□□□ 1.39
CPSF1-205ENST00000531042 METP08581 1390 aa23.75■■□□□ 1.39
CPSF1-205ENST00000531042 COL16A1Q07092 1604 aaPredicted RBP23.71■■□□□ 1.39
CPSF1-205ENST00000531042 JCADQ9P266 1359 aa23.7■■□□□ 1.38
CPSF1-205ENST00000531042 DCCP43146 1447 aa23.69■■□□□ 1.38
CPSF1-205ENST00000531042 VGFO15240 615 aaPredicted RBP23.68■■□□□ 1.38
CPSF1-205ENST00000531042 AHDC1Q5TGY3 1603 aaPredicted RBP23.67■■□□□ 1.38
CPSF1-205ENST00000531042 RPGRIP1LQ68CZ1 1315 aa23.66■■□□□ 1.38
CPSF1-205ENST00000531042 SETD1AO15047 1707 aaKnown RBP23.64■■□□□ 1.38
CPSF1-205ENST00000531042 FOXD1Q16676 465 aa23.64■■□□□ 1.37
CPSF1-205ENST00000531042 BRINP3Q76B58 766 aa23.64■■□□□ 1.37
CPSF1-205ENST00000531042 PPLO60437 1756 aa23.64■■□□□ 1.37
CPSF1-205ENST00000531042 MST1RQ04912 1400 aa23.62■■□□□ 1.37
CPSF1-205ENST00000531042 ADGRL3Q9HAR2 1447 aa23.62■■□□□ 1.37
CPSF1-205ENST00000531042 POTEAQ6S8J7 498 aa23.61■■□□□ 1.37
CPSF1-205ENST00000531042 NALCNQ8IZF0 1738 aa23.61■■□□□ 1.37
CPSF1-205ENST00000531042 SPATA31A6Q5VVP1 1343 aa23.59■■□□□ 1.37
CPSF1-205ENST00000531042 ASXL1Q8IXJ9 1541 aa23.59■■□□□ 1.37
CPSF1-205ENST00000531042 MPHOSPH9Q99550 1183 aa23.59■■□□□ 1.37
CPSF1-205ENST00000531042 SHPRHQ149N8 1683 aa23.59■■□□□ 1.37
CPSF1-205ENST00000531042 CCDC144AA2RUR9 1427 aa23.58■■□□□ 1.36
CPSF1-205ENST00000531042 PTCH1Q13635 1447 aa23.58■■□□□ 1.36
CPSF1-205ENST00000531042 LRP6O75581 1613 aa23.56■■□□□ 1.36
CPSF1-205ENST00000531042 NHSL1Q5SYE7 1610 aa23.55■■□□□ 1.36
CPSF1-205ENST00000531042 ROBO2Q9HCK4 1378 aa23.55■■□□□ 1.36
CPSF1-205ENST00000531042 PRAG1Q86YV5 1406 aa23.55■■□□□ 1.36
CPSF1-205ENST00000531042 SPATA31E1Q6ZUB1 1445 aa23.53■■□□□ 1.36
CPSF1-205ENST00000531042 RGL3Q3MIN7 710 aa23.52■■□□□ 1.36
CPSF1-205ENST00000531042 SETD5Q9C0A6 1442 aa23.51■■□□□ 1.35
CPSF1-205ENST00000531042 IFT172Q9UG01 1749 aa23.51■■□□□ 1.35
CPSF1-205ENST00000531042 ADGRF5Q8IZF2 1346 aa23.51■■□□□ 1.35
CPSF1-205ENST00000531042 ACIN1Q9UKV3 1341 aaKnown RBP23.51■■□□□ 1.35
CPSF1-205ENST00000531042 C1orf167Q5SNV9 1468 aa23.49■■□□□ 1.35
CPSF1-205ENST00000531042 MEX3CQ5U5Q3 659 aaKnown RBP23.49■■□□□ 1.35
CPSF1-205ENST00000531042 DDX17Q92841 729 aaKnown RBP23.48■■□□□ 1.35
CPSF1-205ENST00000531042 LRRC59Q96AG4 307 aaKnown RBP23.48■■□□□ 1.35
CPSF1-205ENST00000531042 ANKRD30BQ9BXX2 1392 aa23.48■■□□□ 1.35
CPSF1-205ENST00000531042 NUTM2BA6NNL0 878 aaPredicted RBP23.44■■□□□ 1.34
CPSF1-205ENST00000531042 NUTM2EB1AL46 878 aaPredicted RBP23.44■■□□□ 1.34
CPSF1-205ENST00000531042 NUTM2AQ8IVF1 878 aaPredicted RBP23.44■■□□□ 1.34
CPSF1-205ENST00000531042 LAMC1P11047 1609 aa23.44■■□□□ 1.34
CPSF1-205ENST00000531042 ZNF772Q68DY9 489 aaPredicted RBP23.43■■□□□ 1.34
CPSF1-205ENST00000531042 ORAI2Q96SN7 254 aa23.42■■□□□ 1.34
CPSF1-205ENST00000531042 PIK3C2GO75747 1445 aa23.42■■□□□ 1.34
CPSF1-205ENST00000531042 TECPR2O15040 1411 aa23.41■■□□□ 1.34
CPSF1-205ENST00000531042 PNPLA6Q8IY17 1366 aa23.4■■□□□ 1.34
CPSF1-205ENST00000531042 RAB3GAP2Q9H2M9 1393 aa23.4■■□□□ 1.34
CPSF1-205ENST00000531042 STK26Q9P289 416 aa23.4■■□□□ 1.34
CPSF1-205ENST00000531042 CDC42BPGQ6DT37 1551 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms