RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 IQGAP3Q86VI3 1631 aa17.5■□□□□ 0.39
VPS28-214ENST00000531032 E9PCH4 1651 aa17.49■□□□□ 0.39
VPS28-214ENST00000531032 TMEM94Q12767 1356 aa17.49■□□□□ 0.39
VPS28-214ENST00000531032 NKTRP30414 1462 aaKnown RBP17.49■□□□□ 0.39
VPS28-214ENST00000531032 PLEKHG1Q9ULL1 1385 aa17.47■□□□□ 0.39
VPS28-214ENST00000531032 FAM135BQ49AJ0 1406 aa17.46■□□□□ 0.39
VPS28-214ENST00000531032 RIMS2Q9UQ26 1411 aa17.46■□□□□ 0.39
VPS28-214ENST00000531032 SENP3Q9H4L4 574 aaPredicted RBP17.44■□□□□ 0.38
VPS28-214ENST00000531032 CHD2O14647 1828 aaKnown RBP17.43■□□□□ 0.38
VPS28-214ENST00000531032 HDGFP51858 240 aaKnown RBP17.43■□□□□ 0.38
VPS28-214ENST00000531032 PROSER2Q86WR7 435 aaPredicted RBP17.43■□□□□ 0.38
VPS28-214ENST00000531032 ROBO1Q9Y6N7 1651 aa17.42■□□□□ 0.38
VPS28-214ENST00000531032 PPP1R15AO75807 674 aaPredicted RBP17.41■□□□□ 0.38
VPS28-214ENST00000531032 BCANQ96GW7 911 aa17.41■□□□□ 0.38
VPS28-214ENST00000531032 PHF23Q9BUL5 403 aaPredicted RBP17.41■□□□□ 0.38
VPS28-214ENST00000531032 NUP155O75694 1391 aa17.4■□□□□ 0.38
VPS28-214ENST00000531032 RBM33Q96EV2 1170 aaKnown RBP17.4■□□□□ 0.38
VPS28-214ENST00000531032 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.39■□□□□ 0.37
VPS28-214ENST00000531032 TBX22Q9Y458 520 aa17.39■□□□□ 0.37
VPS28-214ENST00000531032 DIP2AQ14689 1571 aa17.39■□□□□ 0.37
VPS28-214ENST00000531032 MSH6P52701 1360 aa17.39■□□□□ 0.37
VPS28-214ENST00000531032 ADAMTS13Q76LX8 1427 aa17.38■□□□□ 0.37
VPS28-214ENST00000531032 ITGAEP38570 1179 aa17.38■□□□□ 0.37
VPS28-214ENST00000531032 CHGAP10645 457 aaKnown RBP17.37■□□□□ 0.37
VPS28-214ENST00000531032 PPARGC1BQ86YN6 1023 aaKnown RBP17.36■□□□□ 0.37
VPS28-214ENST00000531032 NCOA3Q9Y6Q9 1424 aa17.36■□□□□ 0.37
VPS28-214ENST00000531032 SPHKAPQ2M3C7 1700 aa17.35■□□□□ 0.37
VPS28-214ENST00000531032 PIK3R4Q99570 1358 aa17.35■□□□□ 0.37
VPS28-214ENST00000531032 RRBP1Q9P2E9 1410 aaKnown RBP17.34■□□□□ 0.37
VPS28-214ENST00000531032 NUTM2DQ5VT03 806 aaPredicted RBP17.33■□□□□ 0.36
VPS28-214ENST00000531032 TRPM2O94759 1503 aa17.32■□□□□ 0.36
VPS28-214ENST00000531032 SLAIN2Q9P270 581 aa17.32■□□□□ 0.36
VPS28-214ENST00000531032 RGS17Q9UGC6 210 aaPredicted RBP17.31■□□□□ 0.36
VPS28-214ENST00000531032 PHLPP1O60346 1717 aa17.3■□□□□ 0.36
VPS28-214ENST00000531032 NRXN3Q9Y4C0 1643 aa17.3■□□□□ 0.36
VPS28-214ENST00000531032 SETBP1Q9Y6X0 1596 aa17.3■□□□□ 0.36
VPS28-214ENST00000531032 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.29■□□□□ 0.36
VPS28-214ENST00000531032 NAIPQ13075 1403 aa17.28■□□□□ 0.36
VPS28-214ENST00000531032 PTPRUQ92729 1446 aa17.28■□□□□ 0.36
VPS28-214ENST00000531032 COL16A1Q07092 1604 aaPredicted RBP17.27■□□□□ 0.36
VPS28-214ENST00000531032 XRN1Q8IZH2 1706 aaKnown RBP17.27■□□□□ 0.35
VPS28-214ENST00000531032 CLTCL1P53675 1640 aa17.26■□□□□ 0.35
VPS28-214ENST00000531032 C19orf44Q9H6X5 657 aa17.26■□□□□ 0.35
VPS28-214ENST00000531032 C14orf37Q86TY3 774 aa17.25■□□□□ 0.35
VPS28-214ENST00000531032 CADPS2Q86UW7 1296 aa17.25■□□□□ 0.35
VPS28-214ENST00000531032 AMOTL2Q9Y2J4 779 aa17.25■□□□□ 0.35
VPS28-214ENST00000531032 JCADQ9P266 1359 aa17.25■□□□□ 0.35
VPS28-214ENST00000531032 NEXMIFQ5QGS0 1516 aa17.24■□□□□ 0.35
VPS28-214ENST00000531032 AHDC1Q5TGY3 1603 aaPredicted RBP17.24■□□□□ 0.35
VPS28-214ENST00000531032 HFM1A2PYH4 1435 aa17.22■□□□□ 0.35
VPS28-214ENST00000531032 DCCP43146 1447 aa17.22■□□□□ 0.35
VPS28-214ENST00000531032 ZNF326Q5BKZ1 582 aaKnown RBP17.22■□□□□ 0.35
VPS28-214ENST00000531032 ATF3P18847 181 aa17.21■□□□□ 0.35
VPS28-214ENST00000531032 KIF1BO60333 1816 aa17.21■□□□□ 0.35
VPS28-214ENST00000531032 METP08581 1390 aa17.2■□□□□ 0.34
VPS28-214ENST00000531032 POTEAQ6S8J7 498 aa17.19■□□□□ 0.34
VPS28-214ENST00000531032 SHPRHQ149N8 1683 aa17.18■□□□□ 0.34
VPS28-214ENST00000531032 SPATA31A6Q5VVP1 1343 aa17.17■□□□□ 0.34
VPS28-214ENST00000531032 BRINP3Q76B58 766 aa17.16■□□□□ 0.34
VPS28-214ENST00000531032 LRP6O75581 1613 aa17.16■□□□□ 0.34
VPS28-214ENST00000531032 ASXL1Q8IXJ9 1541 aa17.16■□□□□ 0.34
VPS28-214ENST00000531032 MST1RQ04912 1400 aa17.15■□□□□ 0.34
VPS28-214ENST00000531032 SETD1AO15047 1707 aaKnown RBP17.15■□□□□ 0.34
VPS28-214ENST00000531032 ADGRL3Q9HAR2 1447 aa17.14■□□□□ 0.33
VPS28-214ENST00000531032 NALCNQ8IZF0 1738 aa17.14■□□□□ 0.33
VPS28-214ENST00000531032 TRIM52Q96A61 297 aa17.13■□□□□ 0.33
VPS28-214ENST00000531032 NHSL1Q5SYE7 1610 aa17.13■□□□□ 0.33
VPS28-214ENST00000531032 PTCH1Q13635 1447 aa17.12■□□□□ 0.33
VPS28-214ENST00000531032 VGFO15240 615 aaPredicted RBP17.11■□□□□ 0.33
VPS28-214ENST00000531032 SLC4A1APQ9BWU0 796 aaKnown RBP17.11■□□□□ 0.33
VPS28-214ENST00000531032 PRAG1Q86YV5 1406 aa17.11■□□□□ 0.33
VPS28-214ENST00000531032 PPLO60437 1756 aa17.1■□□□□ 0.33
VPS28-214ENST00000531032 RPGRIP1LQ68CZ1 1315 aa17.1■□□□□ 0.33
VPS28-214ENST00000531032 SETD5Q9C0A6 1442 aa17.1■□□□□ 0.33
VPS28-214ENST00000531032 MEX3CQ5U5Q3 659 aaKnown RBP17.07■□□□□ 0.32
VPS28-214ENST00000531032 ROBO2Q9HCK4 1378 aa17.06■□□□□ 0.32
VPS28-214ENST00000531032 ZNF772Q68DY9 489 aaPredicted RBP17.05■□□□□ 0.32
VPS28-214ENST00000531032 LAMC1P11047 1609 aa17.05■□□□□ 0.32
VPS28-214ENST00000531032 C1orf167Q5SNV9 1468 aa17.05■□□□□ 0.32
VPS28-214ENST00000531032 LRRC59Q96AG4 307 aaKnown RBP17.03■□□□□ 0.32
VPS28-214ENST00000531032 CCDC144AA2RUR9 1427 aa17.03■□□□□ 0.32
VPS28-214ENST00000531032 FOXD1Q16676 465 aa17.02■□□□□ 0.32
VPS28-214ENST00000531032 SPATA31E1Q6ZUB1 1445 aa17.02■□□□□ 0.31
VPS28-214ENST00000531032 NUTM2BA6NNL0 878 aaPredicted RBP17.01■□□□□ 0.31
VPS28-214ENST00000531032 NUTM2EB1AL46 878 aaPredicted RBP17.01■□□□□ 0.31
VPS28-214ENST00000531032 NUTM2AQ8IVF1 878 aaPredicted RBP17.01■□□□□ 0.31
VPS28-214ENST00000531032 DDX17Q92841 729 aaKnown RBP17.01■□□□□ 0.31
VPS28-214ENST00000531032 IFT172Q9UG01 1749 aa17.01■□□□□ 0.31
VPS28-214ENST00000531032 PNPLA6Q8IY17 1366 aa17.01■□□□□ 0.31
VPS28-214ENST00000531032 ADGRF5Q8IZF2 1346 aa16.98■□□□□ 0.31
VPS28-214ENST00000531032 CDC42BPGQ6DT37 1551 aa16.98■□□□□ 0.31
VPS28-214ENST00000531032 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
VPS28-214ENST00000531032 ANKRD30BQ9BXX2 1392 aa16.98■□□□□ 0.31
VPS28-214ENST00000531032 CDK12Q9NYV4 1490 aaPredicted RBP16.98■□□□□ 0.31
VPS28-214ENST00000531032 AFF2P51816 1311 aa16.96■□□□□ 0.31
VPS28-214ENST00000531032 SOS2Q07890 1332 aaPredicted RBP16.96■□□□□ 0.31
VPS28-214ENST00000531032 TECPR2O15040 1411 aa16.96■□□□□ 0.31
VPS28-214ENST00000531032 ORAI2Q96SN7 254 aa16.96■□□□□ 0.31
VPS28-214ENST00000531032 RXRBP28702 533 aa16.95■□□□□ 0.3
VPS28-214ENST00000531032 KNDC1Q76NI1 1749 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms