RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 TMEM134Q9H6X4 195 aa16.3■□□□□ 0.2
CSDE1-213ENST00000530784 CCDC102AQ96A19 550 aa16.29■□□□□ 0.2
CSDE1-213ENST00000530784 HPS5Q9UPZ3 1129 aa16.28■□□□□ 0.2
CSDE1-213ENST00000530784 RNF40O75150 1001 aa16.26■□□□□ 0.19
CSDE1-213ENST00000530784 WBP1LQ9NX94 342 aa16.26■□□□□ 0.19
CSDE1-213ENST00000530784 TSR3Q9UJK0 312 aaKnown RBP16.26■□□□□ 0.19
CSDE1-213ENST00000530784 PPP4CP60510 307 aa16.23■□□□□ 0.19
CSDE1-213ENST00000530784 SLF2Q8IX21 1173 aa16.23■□□□□ 0.19
CSDE1-213ENST00000530784 SLC4A3P48751 1232 aa16.18■□□□□ 0.18
CSDE1-213ENST00000530784 DAXXQ9UER7 740 aaPredicted RBP16.17■□□□□ 0.18
CSDE1-213ENST00000530784 SLC24A3Q9HC58 644 aa16.15■□□□□ 0.18
CSDE1-213ENST00000530784 MDM2Q00987 491 aaPredicted RBP16.14■□□□□ 0.17
CSDE1-213ENST00000530784 SLC10A3P09131 477 aa16.13■□□□□ 0.17
CSDE1-213ENST00000530784 NYAP1Q6ZVC0 841 aa16.13■□□□□ 0.17
CSDE1-213ENST00000530784 AK7Q96M32 723 aa16.13■□□□□ 0.17
CSDE1-213ENST00000530784 NECTIN2Q92692 538 aa16.1■□□□□ 0.17
CSDE1-213ENST00000530784 DDX11L8A8MPP1 907 aa16.09■□□□□ 0.17
CSDE1-213ENST00000530784 TRIM66O15016 1216 aa16.09■□□□□ 0.17
CSDE1-213ENST00000530784 APLP1P51693 650 aa16.09■□□□□ 0.17
CSDE1-213ENST00000530784 CLCN1P35523 988 aa16.06■□□□□ 0.16
CSDE1-213ENST00000530784 REPIN1Q9BWE0 567 aaKnown RBP16.06■□□□□ 0.16
CSDE1-213ENST00000530784 AMHR2Q16671 573 aa16.05■□□□□ 0.16
CSDE1-213ENST00000530784 RDH13Q8NBN7 331 aa16.05■□□□□ 0.16
CSDE1-213ENST00000530784 TMUB1Q9BVT8 246 aa16.05■□□□□ 0.16
CSDE1-213ENST00000530784 GPCPD1Q9NPB8 672 aa16.05■□□□□ 0.16
CSDE1-213ENST00000530784 CFHP08603 1231 aa16.04■□□□□ 0.16
CSDE1-213ENST00000530784 RSPH4AQ5TD94 716 aa16.04■□□□□ 0.16
CSDE1-213ENST00000530784 SULF1Q8IWU6 871 aa16.04■□□□□ 0.16
CSDE1-213ENST00000530784 TPRNQ4KMQ1 711 aa16.02■□□□□ 0.16
CSDE1-213ENST00000530784 TTLL12Q14166 644 aaPredicted RBP16.01■□□□□ 0.15
CSDE1-213ENST00000530784 KMT5BQ4FZB7 885 aa16■□□□□ 0.15
CSDE1-213ENST00000530784 PRR14Q9BWN1 585 aa15.99■□□□□ 0.15
CSDE1-213ENST00000530784 FAM217BQ9NTX9 383 aaPredicted RBP15.99■□□□□ 0.15
CSDE1-213ENST00000530784 PLA2G2EQ9NZK7 142 aa15.99■□□□□ 0.15
CSDE1-213ENST00000530784 ACTN4O43707 911 aaKnown RBP15.97■□□□□ 0.15
CSDE1-213ENST00000530784 CD46P15529 392 aa15.97■□□□□ 0.15
CSDE1-213ENST00000530784 PDE4DQ08499 809 aa15.97■□□□□ 0.15
CSDE1-213ENST00000530784 PARP9Q8IXQ6 854 aa15.96■□□□□ 0.15
CSDE1-213ENST00000530784 GCGRP47871 477 aa15.95■□□□□ 0.14
CSDE1-213ENST00000530784 TJAP1Q5JTD0 557 aa15.95■□□□□ 0.14
CSDE1-213ENST00000530784 GIGYF2Q6Y7W6 1299 aaKnown RBP15.95■□□□□ 0.14
CSDE1-213ENST00000530784 MTRQ99707 1265 aa15.95■□□□□ 0.14
CSDE1-213ENST00000530784 ITGBL1O95965 494 aaPredicted RBP15.94■□□□□ 0.14
CSDE1-213ENST00000530784 PCDHB3Q9Y5E6 796 aa15.94■□□□□ 0.14
CSDE1-213ENST00000530784 SSTR3P32745 418 aaPredicted RBP15.93■□□□□ 0.14
CSDE1-213ENST00000530784 COPS2P61201 443 aa15.92■□□□□ 0.14
CSDE1-213ENST00000530784 KCNC4Q03721 635 aa15.89■□□□□ 0.13
CSDE1-213ENST00000530784 FUT2Q10981 343 aa15.89■□□□□ 0.13
CSDE1-213ENST00000530784 BLOC1S3Q6QNY0 202 aa15.89■□□□□ 0.13
CSDE1-213ENST00000530784 IL21Q9HBE4 155 aa15.89■□□□□ 0.13
CSDE1-213ENST00000530784 ZNF516Q92618 1163 aa15.88■□□□□ 0.13
CSDE1-213ENST00000530784 NISCHQ9Y2I1 1504 aa15.88■□□□□ 0.13
CSDE1-213ENST00000530784 PUS10Q3MIT2 529 aaKnown RBP15.87■□□□□ 0.13
CSDE1-213ENST00000530784 MS4A1P11836 297 aa15.85■□□□□ 0.13
CSDE1-213ENST00000530784 PRKCSHP14314 528 aaPredicted RBP15.85■□□□□ 0.13
CSDE1-213ENST00000530784 IFFO2Q5TF58 517 aa15.85■□□□□ 0.13
CSDE1-213ENST00000530784 KDM4AO75164 1064 aa15.83■□□□□ 0.12
CSDE1-213ENST00000530784 ATP6V1AP38606 617 aa15.83■□□□□ 0.12
CSDE1-213ENST00000530784 ZPR1O75312 459 aa15.81■□□□□ 0.12
CSDE1-213ENST00000530784 BEGAINQ9BUH8 593 aa15.81■□□□□ 0.12
CSDE1-213ENST00000530784 MORN1Q5T089 497 aa15.8■□□□□ 0.12
CSDE1-213ENST00000530784 SCUBE3Q8IX30 993 aa15.79■□□□□ 0.12
CSDE1-213ENST00000530784 NKX2-3Q8TAU0 364 aa15.79■□□□□ 0.12
CSDE1-213ENST00000530784 GPBP1L1Q9HC44 474 aaPredicted RBP15.79■□□□□ 0.12
CSDE1-213ENST00000530784 NR1I2O75469 434 aa15.78■□□□□ 0.12
CSDE1-213ENST00000530784 NUTM1Q86Y26 1132 aa15.77■□□□□ 0.12
CSDE1-213ENST00000530784 GRIPAP1Q4V328 841 aa15.76■□□□□ 0.11
CSDE1-213ENST00000530784 SLC27A5Q9Y2P5 690 aa15.76■□□□□ 0.11
CSDE1-213ENST00000530784 TLL1O43897 1013 aa15.75■□□□□ 0.11
CSDE1-213ENST00000530784 USP46P62068 366 aa15.75■□□□□ 0.11
CSDE1-213ENST00000530784 SPIRE2Q8WWL2 714 aa15.75■□□□□ 0.11
CSDE1-213ENST00000530784 HLA-CQ95604 372 aa15.75■□□□□ 0.11
CSDE1-213ENST00000530784 KDM4CQ9H3R0 1056 aa15.74■□□□□ 0.11
CSDE1-213ENST00000530784 HOXA2O43364 376 aa15.73■□□□□ 0.11
CSDE1-213ENST00000530784 A0A0G2JS52 829 aa15.71■□□□□ 0.11
CSDE1-213ENST00000530784 GUCA2AQ02747 115 aa15.7■□□□□ 0.1
CSDE1-213ENST00000530784 TBC1D2Q9BYX2 928 aa15.69■□□□□ 0.1
CSDE1-213ENST00000530784 NEUROD2Q15784 382 aa15.67■□□□□ 0.1
CSDE1-213ENST00000530784 THAP11Q96EK4 314 aa15.67■□□□□ 0.1
CSDE1-213ENST00000530784 MOXD2PA6NHM9 499 aa15.66■□□□□ 0.1
CSDE1-213ENST00000530784 NDUFV2P19404 249 aa15.66■□□□□ 0.1
CSDE1-213ENST00000530784 ADH1BP00325 375 aa15.65■□□□□ 0.1
CSDE1-213ENST00000530784 RNF19BQ6ZMZ0 732 aa15.65■□□□□ 0.1
CSDE1-213ENST00000530784 SPSB2Q99619 263 aa15.65■□□□□ 0.1
CSDE1-213ENST00000530784 FMNL1O95466 1100 aaPredicted RBP15.64■□□□□ 0.09
CSDE1-213ENST00000530784 BRPF1P55201 1214 aaPredicted RBP15.64■□□□□ 0.09
CSDE1-213ENST00000530784 PPP1R18Q6NYC8 613 aa15.64■□□□□ 0.09
CSDE1-213ENST00000530784 BRICD5Q6PL45 260 aa15.64■□□□□ 0.09
CSDE1-213ENST00000530784 FAM117AQ9C073 453 aa15.64■□□□□ 0.09
CSDE1-213ENST00000530784 SALL2Q9Y467 1007 aaPredicted RBP15.64■□□□□ 0.09
CSDE1-213ENST00000530784 FDX1P10109 184 aa15.62■□□□□ 0.09
CSDE1-213ENST00000530784 DIXDC1Q155Q3 683 aa15.62■□□□□ 0.09
CSDE1-213ENST00000530784 Q3C1V9 767 aa15.62■□□□□ 0.09
CSDE1-213ENST00000530784 PCDHGC3Q9UN70 934 aa15.61■□□□□ 0.09
CSDE1-213ENST00000530784 S1PR4O95977 384 aa15.59■□□□□ 0.09
CSDE1-213ENST00000530784 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.59■□□□□ 0.09
CSDE1-213ENST00000530784 MYSM1Q5VVJ2 828 aa15.58■□□□□ 0.08
CSDE1-213ENST00000530784 FAM160A2Q8N612 972 aaPredicted RBP15.58■□□□□ 0.08
CSDE1-213ENST00000530784 SYMPKQ92797 1274 aaKnown RBP15.58■□□□□ 0.08
CSDE1-213ENST00000530784 SLC6A16Q9GZN6 736 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms