RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 CHGAP10645 457 aaKnown RBP20.56■□□□□ 0.88
USF1-209ENST00000529476 CCDC144AA2RUR9 1427 aa20.55■□□□□ 0.88
USF1-209ENST00000529476 THEMISQ8N1K5 641 aaPredicted RBP20.54■□□□□ 0.88
USF1-209ENST00000529476 TOM1O60784 492 aa20.52■□□□□ 0.88
USF1-209ENST00000529476 PHF23Q9BUL5 403 aaPredicted RBP20.5■□□□□ 0.87
USF1-209ENST00000529476 SLIT1O75093 1534 aa20.49■□□□□ 0.87
USF1-209ENST00000529476 ARHGAP23Q9P227 1491 aa20.49■□□□□ 0.87
USF1-209ENST00000529476 TMEM2Q9UHN6 1383 aa20.48■□□□□ 0.87
USF1-209ENST00000529476 POLR1AO95602 1720 aaPredicted RBP20.47■□□□□ 0.87
USF1-209ENST00000529476 SPATA31E1Q6ZUB1 1445 aa20.45■□□□□ 0.86
USF1-209ENST00000529476 CPS1P31327 1500 aa20.45■□□□□ 0.86
USF1-209ENST00000529476 ZNF326Q5BKZ1 582 aaKnown RBP20.45■□□□□ 0.86
USF1-209ENST00000529476 ZFYVE9O95405 1425 aa20.44■□□□□ 0.86
USF1-209ENST00000529476 RIMS2Q9UQ26 1411 aa20.44■□□□□ 0.86
USF1-209ENST00000529476 ANKLE2Q86XL3 938 aa20.44■□□□□ 0.86
USF1-209ENST00000529476 ALKQ9UM73 1620 aa20.44■□□□□ 0.86
USF1-209ENST00000529476 NEURL4Q96JN8 1562 aa20.43■□□□□ 0.86
USF1-209ENST00000529476 LTKP29376 864 aa20.43■□□□□ 0.86
USF1-209ENST00000529476 TXNDC2Q86VQ3 553 aa20.43■□□□□ 0.86
USF1-209ENST00000529476 SCAF11Q99590 1463 aaKnown RBP20.43■□□□□ 0.86
USF1-209ENST00000529476 RGL3Q3MIN7 710 aa20.42■□□□□ 0.86
USF1-209ENST00000529476 SIN3AQ96ST3 1273 aa20.42■□□□□ 0.86
USF1-209ENST00000529476 NEXMIFQ5QGS0 1516 aa20.42■□□□□ 0.86
USF1-209ENST00000529476 NUTM2DQ5VT03 806 aaPredicted RBP20.41■□□□□ 0.86
USF1-209ENST00000529476 EID1Q9Y6B2 187 aa20.41■□□□□ 0.86
USF1-209ENST00000529476 PPLO60437 1756 aa20.4■□□□□ 0.86
USF1-209ENST00000529476 SENP3Q9H4L4 574 aaPredicted RBP20.4■□□□□ 0.86
USF1-209ENST00000529476 IFT172Q9UG01 1749 aa20.39■□□□□ 0.85
USF1-209ENST00000529476 MED14O60244 1454 aa20.37■□□□□ 0.85
USF1-209ENST00000529476 NPHP4O75161 1426 aaPredicted RBP20.37■□□□□ 0.85
USF1-209ENST00000529476 PPP1R15AO75807 674 aaPredicted RBP20.37■□□□□ 0.85
USF1-209ENST00000529476 HDGFP51858 240 aaKnown RBP20.37■□□□□ 0.85
USF1-209ENST00000529476 NEUROD1Q13562 356 aa20.37■□□□□ 0.85
USF1-209ENST00000529476 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.37■□□□□ 0.85
USF1-209ENST00000529476 IQGAP1P46940 1657 aa20.37■□□□□ 0.85
USF1-209ENST00000529476 RPGRIP1LQ68CZ1 1315 aa20.36■□□□□ 0.85
USF1-209ENST00000529476 CCER1Q8TC90 406 aaPredicted RBP20.36■□□□□ 0.85
USF1-209ENST00000529476 RGS17Q9UGC6 210 aaPredicted RBP20.36■□□□□ 0.85
USF1-209ENST00000529476 PLEKHG1Q9ULL1 1385 aa20.33■□□□□ 0.84
USF1-209ENST00000529476 VGFO15240 615 aaPredicted RBP20.3■□□□□ 0.84
USF1-209ENST00000529476 BCANQ96GW7 911 aa20.3■□□□□ 0.84
USF1-209ENST00000529476 ADGRF5Q8IZF2 1346 aa20.29■□□□□ 0.84
USF1-209ENST00000529476 CLSPNQ9HAW4 1339 aa20.29■□□□□ 0.84
USF1-209ENST00000529476 NRXN3Q9Y4C0 1643 aa20.29■□□□□ 0.84
USF1-209ENST00000529476 DCAF11Q8TEB1 546 aa20.29■□□□□ 0.84
USF1-209ENST00000529476 MYOM2P54296 1465 aa20.28■□□□□ 0.84
USF1-209ENST00000529476 SETBP1Q9Y6X0 1596 aa20.28■□□□□ 0.84
USF1-209ENST00000529476 SLC26A8Q96RN1 970 aa20.27■□□□□ 0.84
USF1-209ENST00000529476 KDM2AQ9Y2K7 1162 aa20.27■□□□□ 0.84
USF1-209ENST00000529476 ADAMTS13Q76LX8 1427 aa20.27■□□□□ 0.83
USF1-209ENST00000529476 L3MBTL2Q969R5 705 aa20.26■□□□□ 0.83
USF1-209ENST00000529476 STRCP1A6NGW2 1772 aa20.26■□□□□ 0.83
USF1-209ENST00000529476 LRRC7Q96NW7 1537 aa20.25■□□□□ 0.83
USF1-209ENST00000529476 NRXN1Q9ULB1 1477 aa20.24■□□□□ 0.83
USF1-209ENST00000529476 DIP2AQ14689 1571 aa20.23■□□□□ 0.83
USF1-209ENST00000529476 TONSLQ96HA7 1378 aa20.22■□□□□ 0.83
USF1-209ENST00000529476 PIK3C2GO75747 1445 aa20.22■□□□□ 0.83
USF1-209ENST00000529476 SETD1AO15047 1707 aaKnown RBP20.22■□□□□ 0.83
USF1-209ENST00000529476 TBX22Q9Y458 520 aa20.21■□□□□ 0.83
USF1-209ENST00000529476 POTEAQ6S8J7 498 aa20.2■□□□□ 0.82
USF1-209ENST00000529476 STAC3Q96MF2 364 aa20.2■□□□□ 0.82
USF1-209ENST00000529476 CHD2O14647 1828 aaKnown RBP20.17■□□□□ 0.82
USF1-209ENST00000529476 METP08581 1390 aa20.17■□□□□ 0.82
USF1-209ENST00000529476 CFAP70Q5T0N1 1121 aa20.16■□□□□ 0.82
USF1-209ENST00000529476 PRAG1Q86YV5 1406 aa20.16■□□□□ 0.82
USF1-209ENST00000529476 LAMC1P11047 1609 aa20.16■□□□□ 0.82
USF1-209ENST00000529476 C14orf93Q9H972 538 aaKnown RBP20.15■□□□□ 0.82
USF1-209ENST00000529476 NWD1Q149M9 1564 aa20.13■□□□□ 0.81
USF1-209ENST00000529476 ASXL1Q8IXJ9 1541 aa20.13■□□□□ 0.81
USF1-209ENST00000529476 PTPRUQ92729 1446 aa20.13■□□□□ 0.81
USF1-209ENST00000529476 PIK3R4Q99570 1358 aa20.13■□□□□ 0.81
USF1-209ENST00000529476 KCNA6P17658 529 aa20.12■□□□□ 0.81
USF1-209ENST00000529476 KIAA1210Q9ULL0 1709 aa20.11■□□□□ 0.81
USF1-209ENST00000529476 TMEM132EQ6IEE7 984 aa20.11■□□□□ 0.81
USF1-209ENST00000529476 XRN1Q8IZH2 1706 aaKnown RBP20.1■□□□□ 0.81
USF1-209ENST00000529476 NBPF8Q3BBV2 869 aa20.1■□□□□ 0.81
USF1-209ENST00000529476 TIMELESSQ9UNS1 1208 aa20.1■□□□□ 0.81
USF1-209ENST00000529476 AMOTL2Q9Y2J4 779 aa20.09■□□□□ 0.81
USF1-209ENST00000529476 TRPM1Q7Z4N2 1603 aa20.09■□□□□ 0.81
USF1-209ENST00000529476 ADGRB1O14514 1584 aa20.08■□□□□ 0.8
USF1-209ENST00000529476 XIRP1Q702N8 1843 aaKnown RBP20.06■□□□□ 0.8
USF1-209ENST00000529476 NKTRP30414 1462 aaKnown RBP20.06■□□□□ 0.8
USF1-209ENST00000529476 YTHDC2Q9H6S0 1430 aaKnown RBP20.05■□□□□ 0.8
USF1-209ENST00000529476 NBPF1Q3BBV0 1214 aa20.05■□□□□ 0.8
USF1-209ENST00000529476 STK26Q9P289 416 aa20.05■□□□□ 0.8
USF1-209ENST00000529476 LRPPRCP42704 1394 aaKnown RBP20.05■□□□□ 0.8
USF1-209ENST00000529476 FAM135BQ49AJ0 1406 aa20.04■□□□□ 0.8
USF1-209ENST00000529476 KNDC1Q76NI1 1749 aa20.04■□□□□ 0.8
USF1-209ENST00000529476 PROSER2Q86WR7 435 aaPredicted RBP20.03■□□□□ 0.8
USF1-209ENST00000529476 RBM33Q96EV2 1170 aaKnown RBP20.02■□□□□ 0.8
USF1-209ENST00000529476 ROBO2Q9HCK4 1378 aa20.01■□□□□ 0.79
USF1-209ENST00000529476 RALGAPBQ86X10 1494 aa20■□□□□ 0.79
USF1-209ENST00000529476 ABCC11Q96J66 1382 aa20■□□□□ 0.79
USF1-209ENST00000529476 TECPR2O15040 1411 aa20■□□□□ 0.79
USF1-209ENST00000529476 PTCH1Q13635 1447 aa20■□□□□ 0.79
USF1-209ENST00000529476 ROCK2O75116 1388 aaKnown RBP19.99■□□□□ 0.79
USF1-209ENST00000529476 TMEM94Q12767 1356 aa19.99■□□□□ 0.79
USF1-209ENST00000529476 TRAK1Q9UPV9 953 aa19.98■□□□□ 0.79
USF1-209ENST00000529476 ARHGEF28Q8N1W1 1705 aaKnown RBP19.96■□□□□ 0.79
USF1-209ENST00000529476 DLC1Q96QB1 1528 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms