RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 RBM46Q8TBY0 533 aaKnown RBP10.55□□□□□ -0.72
CTR9-204ENST00000529355 TMUB1Q9BVT8 246 aa10.53□□□□□ -0.72
CTR9-204ENST00000529355 TTLL12Q14166 644 aaPredicted RBP10.5□□□□□ -0.73
CTR9-204ENST00000529355 KDM4CQ9H3R0 1056 aa10.5□□□□□ -0.73
CTR9-204ENST00000529355 MS4A1P11836 297 aa10.49□□□□□ -0.73
CTR9-204ENST00000529355 PTPN5P54829 565 aa10.49□□□□□ -0.73
CTR9-204ENST00000529355 SWT1Q5T5J6 900 aaKnown RBP10.49□□□□□ -0.73
CTR9-204ENST00000529355 DNAJB2P25686 324 aa10.48□□□□□ -0.73
CTR9-204ENST00000529355 FAM98CQ17RN3 349 aaKnown RBP10.48□□□□□ -0.73
CTR9-204ENST00000529355 GIGYF2Q6Y7W6 1299 aaKnown RBP10.48□□□□□ -0.73
CTR9-204ENST00000529355 MRPL50Q8N5N7 158 aaKnown RBP10.48□□□□□ -0.73
CTR9-204ENST00000529355 TMEM134Q9H6X4 195 aa10.48□□□□□ -0.73
CTR9-204ENST00000529355 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.47□□□□□ -0.73
CTR9-204ENST00000529355 SAMD7Q7Z3H4 446 aa10.47□□□□□ -0.73
CTR9-204ENST00000529355 ZFRQ96KR1 1074 aaKnown RBP10.47□□□□□ -0.73
CTR9-204ENST00000529355 NBPF3Q9H094 633 aa10.46□□□□□ -0.73
CTR9-204ENST00000529355 GPCPD1Q9NPB8 672 aa10.46□□□□□ -0.73
CTR9-204ENST00000529355 FAM117AQ9C073 453 aa10.45□□□□□ -0.74
CTR9-204ENST00000529355 DAXXQ9UER7 740 aaPredicted RBP10.45□□□□□ -0.74
CTR9-204ENST00000529355 SSTR3P32745 418 aaPredicted RBP10.44□□□□□ -0.74
CTR9-204ENST00000529355 CLCN1P35523 988 aa10.44□□□□□ -0.74
CTR9-204ENST00000529355 FAM217BQ9NTX9 383 aaPredicted RBP10.44□□□□□ -0.74
CTR9-204ENST00000529355 LAPTM4BQ86VI4 370 aa10.43□□□□□ -0.74
CTR9-204ENST00000529355 IL27Q8NEV9 243 aa10.43□□□□□ -0.74
CTR9-204ENST00000529355 DDX11L8A8MPP1 907 aa10.42□□□□□ -0.74
CTR9-204ENST00000529355 SLC10A3P09131 477 aa10.42□□□□□ -0.74
CTR9-204ENST00000529355 BCAMP50895 628 aa10.42□□□□□ -0.74
CTR9-204ENST00000529355 PLEKHG3A1L390 1219 aa10.4□□□□□ -0.74
CTR9-204ENST00000529355 LAPTM4AQ15012 233 aa10.4□□□□□ -0.74
CTR9-204ENST00000529355 RNF40O75150 1001 aa10.39□□□□□ -0.75
CTR9-204ENST00000529355 GOLGA8CPA6NN73 597 aa10.38□□□□□ -0.75
CTR9-204ENST00000529355 WNT2BQ93097 391 aa10.38□□□□□ -0.75
CTR9-204ENST00000529355 CD46P15529 392 aa10.37□□□□□ -0.75
CTR9-204ENST00000529355 BEGAINQ9BUH8 593 aa10.37□□□□□ -0.75
CTR9-204ENST00000529355 THSD4Q6ZMP0 1018 aa10.36□□□□□ -0.75
CTR9-204ENST00000529355 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.36□□□□□ -0.75
CTR9-204ENST00000529355 SOWAHBA6NEL2 793 aa10.35□□□□□ -0.75
CTR9-204ENST00000529355 RDH13Q8NBN7 331 aa10.35□□□□□ -0.75
CTR9-204ENST00000529355 LRCH3Q96II8 777 aa10.35□□□□□ -0.75
CTR9-204ENST00000529355 ANKK1Q8NFD2 765 aa10.34□□□□□ -0.75
CTR9-204ENST00000529355 HDGFP51858 240 aaKnown RBP10.33□□□□□ -0.76
CTR9-204ENST00000529355 HPS5Q9UPZ3 1129 aa10.33□□□□□ -0.76
CTR9-204ENST00000529355 TRAF7Q6Q0C0 670 aa10.32□□□□□ -0.76
CTR9-204ENST00000529355 WBP1LQ9NX94 342 aa10.32□□□□□ -0.76
CTR9-204ENST00000529355 SLF2Q8IX21 1173 aa10.31□□□□□ -0.76
CTR9-204ENST00000529355 GCGRP47871 477 aa10.3□□□□□ -0.76
CTR9-204ENST00000529355 SULF1Q8IWU6 871 aa10.3□□□□□ -0.76
CTR9-204ENST00000529355 HLA-CQ95604 372 aa10.3□□□□□ -0.76
CTR9-204ENST00000529355 CFHP08603 1231 aa10.29□□□□□ -0.76
CTR9-204ENST00000529355 APLP1P51693 650 aa10.29□□□□□ -0.76
CTR9-204ENST00000529355 SPIRE2Q8WWL2 714 aa10.29□□□□□ -0.76
CTR9-204ENST00000529355 PPP4CP60510 307 aa10.28□□□□□ -0.76
CTR9-204ENST00000529355 TBC1D2Q9BYX2 928 aa10.28□□□□□ -0.76
CTR9-204ENST00000529355 NDUFV2P19404 249 aa10.27□□□□□ -0.77
CTR9-204ENST00000529355 DDRGK1Q96HY6 314 aa10.27□□□□□ -0.77
CTR9-204ENST00000529355 TSR3Q9UJK0 312 aaKnown RBP10.27□□□□□ -0.77
CTR9-204ENST00000529355 GUCA2AQ02747 115 aa10.26□□□□□ -0.77
CTR9-204ENST00000529355 POLR3EQ9NVU0 708 aa10.26□□□□□ -0.77
CTR9-204ENST00000529355 ITGBL1O95965 494 aaPredicted RBP10.25□□□□□ -0.77
CTR9-204ENST00000529355 FUT2Q10981 343 aa10.25□□□□□ -0.77
CTR9-204ENST00000529355 PUS10Q3MIT2 529 aaKnown RBP10.25□□□□□ -0.77
CTR9-204ENST00000529355 MYSM1Q5VVJ2 828 aa10.25□□□□□ -0.77
CTR9-204ENST00000529355 PROCA1Q8NCQ7 364 aaPredicted RBP10.25□□□□□ -0.77
CTR9-204ENST00000529355 MOXD2PA6NHM9 499 aa10.24□□□□□ -0.77
CTR9-204ENST00000529355 KDM4AO75164 1064 aa10.24□□□□□ -0.77
CTR9-204ENST00000529355 FBXO31Q5XUX0 539 aaPredicted RBP10.24□□□□□ -0.77
CTR9-204ENST00000529355 TMEM132AQ24JP5 1023 aa10.23□□□□□ -0.77
CTR9-204ENST00000529355 NUTM1Q86Y26 1132 aa10.23□□□□□ -0.77
CTR9-204ENST00000529355 LCE2BO14633 110 aa10.22□□□□□ -0.77
CTR9-204ENST00000529355 LIMD1Q9UGP4 676 aa10.22□□□□□ -0.77
CTR9-204ENST00000529355 SLC4A3P48751 1232 aa10.21□□□□□ -0.77
CTR9-204ENST00000529355 RSPH4AQ5TD94 716 aa10.21□□□□□ -0.77
CTR9-204ENST00000529355 PCDHB15Q9Y5E8 787 aa10.21□□□□□ -0.77
CTR9-204ENST00000529355 HOXA2O43364 376 aa10.2□□□□□ -0.78
CTR9-204ENST00000529355 ACTN4O43707 911 aaKnown RBP10.2□□□□□ -0.78
CTR9-204ENST00000529355 PCDHGC3Q9UN70 934 aa10.2□□□□□ -0.78
CTR9-204ENST00000529355 GFRA3O60609 400 aa10.19□□□□□ -0.78
CTR9-204ENST00000529355 CSPP1Q1MSJ5 1256 aa10.18□□□□□ -0.78
CTR9-204ENST00000529355 KMT5BQ4FZB7 885 aa10.18□□□□□ -0.78
CTR9-204ENST00000529355 SH3D19Q5HYK7 790 aa10.18□□□□□ -0.78
CTR9-204ENST00000529355 RIC3Q7Z5B4 369 aa10.18□□□□□ -0.78
CTR9-204ENST00000529355 SKIV2LQ15477 1246 aaKnown RBP10.17□□□□□ -0.78
CTR9-204ENST00000529355 RSBN1LQ6PCB5 846 aaPredicted RBP10.17□□□□□ -0.78
CTR9-204ENST00000529355 BLOC1S3Q6QNY0 202 aa10.17□□□□□ -0.78
CTR9-204ENST00000529355 SYMPKQ92797 1274 aaKnown RBP10.17□□□□□ -0.78
CTR9-204ENST00000529355 ATP6V1AP38606 617 aa10.16□□□□□ -0.78
CTR9-204ENST00000529355 COPS2P61201 443 aa10.16□□□□□ -0.78
CTR9-204ENST00000529355 MORN1Q5T089 497 aa10.16□□□□□ -0.78
CTR9-204ENST00000529355 SLC27A5Q9Y2P5 690 aa10.16□□□□□ -0.78
CTR9-204ENST00000529355 SPTLC1O15269 473 aa10.15□□□□□ -0.78
CTR9-204ENST00000529355 QPCTQ16769 361 aa10.15□□□□□ -0.78
CTR9-204ENST00000529355 FDX1P10109 184 aa10.14□□□□□ -0.79
CTR9-204ENST00000529355 CLK2P49760 499 aaKnown RBP10.14□□□□□ -0.79
CTR9-204ENST00000529355 ZNF787Q6DD87 383 aa10.14□□□□□ -0.79
CTR9-204ENST00000529355 CABLES1Q8TDN4 633 aa10.14□□□□□ -0.79
CTR9-204ENST00000529355 RSPH6AQ9H0K4 717 aa10.14□□□□□ -0.79
CTR9-204ENST00000529355 PCDHB3Q9Y5E6 796 aa10.14□□□□□ -0.79
CTR9-204ENST00000529355 USP46P62068 366 aa10.13□□□□□ -0.79
CTR9-204ENST00000529355 ZNF516Q92618 1163 aa10.13□□□□□ -0.79
CTR9-204ENST00000529355 SCUBE3Q8IX30 993 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms