RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 ZFYVE9O95405 1425 aa25.87■■□□□ 1.73
CHMP4A-203ENST00000527154 SPATA31A6Q5VVP1 1343 aa25.86■■□□□ 1.73
CHMP4A-203ENST00000527154 RRP7BPQ9NSQ0 103 aa25.85■■□□□ 1.73
CHMP4A-203ENST00000527154 SLC52A1Q9NWF4 448 aa25.85■■□□□ 1.73
CHMP4A-203ENST00000527154 PLEKHG1Q9ULL1 1385 aa25.83■■□□□ 1.73
CHMP4A-203ENST00000527154 CHD2O14647 1828 aaKnown RBP25.83■■□□□ 1.73
CHMP4A-203ENST00000527154 DAPK1P53355 1430 aa25.82■■□□□ 1.72
CHMP4A-203ENST00000527154 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.82■■□□□ 1.726e-9■■■■□ 22.6
CHMP4A-203ENST00000527154 AHDC1Q5TGY3 1603 aaPredicted RBP25.81■■□□□ 1.72
CHMP4A-203ENST00000527154 ZNF772Q68DY9 489 aaPredicted RBP25.79■■□□□ 1.72
CHMP4A-203ENST00000527154 RPRD2Q5VT52 1461 aaKnown RBP25.79■■□□□ 1.72
CHMP4A-203ENST00000527154 CDK12Q9NYV4 1490 aaPredicted RBP25.78■■□□□ 1.72
CHMP4A-203ENST00000527154 PTPN23Q9H3S7 1636 aa25.77■■□□□ 1.72
CHMP4A-203ENST00000527154 SHPRHQ149N8 1683 aa25.77■■□□□ 1.72
CHMP4A-203ENST00000527154 TBX22Q9Y458 520 aa25.76■■□□□ 1.71
CHMP4A-203ENST00000527154 ANKRD30AQ9BXX3 1397 aa25.73■■□□□ 1.71
CHMP4A-203ENST00000527154 DIP2AQ14689 1571 aa25.73■■□□□ 1.71
CHMP4A-203ENST00000527154 ADAMTS13Q76LX8 1427 aa25.71■■□□□ 1.71
CHMP4A-203ENST00000527154 RIMS2Q9UQ26 1411 aa25.71■■□□□ 1.71
CHMP4A-203ENST00000527154 TMEM131LA2VDJ0 1609 aa25.7■■□□□ 1.71
CHMP4A-203ENST00000527154 PIK3R4Q99570 1358 aa25.7■■□□□ 1.71
CHMP4A-203ENST00000527154 ADGRL2O95490 1459 aa25.7■■□□□ 1.7
CHMP4A-203ENST00000527154 CADPS2Q86UW7 1296 aa25.69■■□□□ 1.7
CHMP4A-203ENST00000527154 SRCAPQ6ZRS2 3230 aa25.69■■□□□ 1.7
CHMP4A-203ENST00000527154 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.68■■□□□ 1.7
CHMP4A-203ENST00000527154 C19orf44Q9H6X5 657 aa25.68■■□□□ 1.7
CHMP4A-203ENST00000527154 MYO5BQ9ULV0 1848 aa25.65■■□□□ 1.7
CHMP4A-203ENST00000527154 RXRBP28702 533 aa25.65■■□□□ 1.7
CHMP4A-203ENST00000527154 HDGFP51858 240 aaKnown RBP25.65■■□□□ 1.7
CHMP4A-203ENST00000527154 TRIM52Q96A61 297 aa25.65■■□□□ 1.7
CHMP4A-203ENST00000527154 GCC2Q8IWJ2 1684 aa25.64■■□□□ 1.69
CHMP4A-203ENST00000527154 MEX3CQ5U5Q3 659 aaKnown RBP25.63■■□□□ 1.69
CHMP4A-203ENST00000527154 BCANQ96GW7 911 aa25.63■■□□□ 1.69
CHMP4A-203ENST00000527154 DCCP43146 1447 aa25.63■■□□□ 1.69
CHMP4A-203ENST00000527154 SETD5Q9C0A6 1442 aa25.63■■□□□ 1.69
CHMP4A-203ENST00000527154 BRINP3Q76B58 766 aa25.62■■□□□ 1.69
CHMP4A-203ENST00000527154 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.6■■□□□ 1.69
CHMP4A-203ENST00000527154 PPP1R15AO75807 674 aaPredicted RBP25.59■■□□□ 1.69
CHMP4A-203ENST00000527154 CHIC2Q9UKJ5 165 aa25.59■■□□□ 1.69
CHMP4A-203ENST00000527154 ATF3P18847 181 aa25.58■■□□□ 1.69
CHMP4A-203ENST00000527154 PTPRUQ92729 1446 aa25.57■■□□□ 1.68
CHMP4A-203ENST00000527154 ANKRD50Q9ULJ7 1429 aa25.57■■□□□ 1.68
CHMP4A-203ENST00000527154 ASXL1Q8IXJ9 1541 aa25.55■■□□□ 1.68
CHMP4A-203ENST00000527154 AFF2P51816 1311 aa25.54■■□□□ 1.68
CHMP4A-203ENST00000527154 RGS12O14924 1447 aa25.54■■□□□ 1.68
CHMP4A-203ENST00000527154 TRPM2O94759 1503 aa25.53■■□□□ 1.68
CHMP4A-203ENST00000527154 NHSL1Q5SYE7 1610 aa25.53■■□□□ 1.68
CHMP4A-203ENST00000527154 C14orf37Q86TY3 774 aa25.52■■□□□ 1.68
CHMP4A-203ENST00000527154 MST1RQ04912 1400 aa25.52■■□□□ 1.68
CHMP4A-203ENST00000527154 UNC13BO14795 1591 aa25.5■■□□□ 1.67
CHMP4A-203ENST00000527154 XRN1Q8IZH2 1706 aaKnown RBP25.5■■□□□ 1.67
CHMP4A-203ENST00000527154 AMOTL2Q9Y2J4 779 aa25.49■■□□□ 1.67
CHMP4A-203ENST00000527154 RBM6P78332 1123 aaKnown RBP25.47■■□□□ 1.67
CHMP4A-203ENST00000527154 E9PCH4 1651 aa25.46■■□□□ 1.67
CHMP4A-203ENST00000527154 NRXN3Q9Y4C0 1643 aa25.46■■□□□ 1.67
CHMP4A-203ENST00000527154 PNPLA6Q8IY17 1366 aa25.45■■□□□ 1.67
CHMP4A-203ENST00000527154 LOC105371045A0A1W2PR82 267 aa25.45■■□□□ 1.66
CHMP4A-203ENST00000527154 NUTM2BA6NNL0 878 aaPredicted RBP25.45■■□□□ 1.66
CHMP4A-203ENST00000527154 NUTM2EB1AL46 878 aaPredicted RBP25.45■■□□□ 1.66
CHMP4A-203ENST00000527154 NUTM2AQ8IVF1 878 aaPredicted RBP25.45■■□□□ 1.66
CHMP4A-203ENST00000527154 LRRC59Q96AG4 307 aaKnown RBP25.45■■□□□ 1.66
CHMP4A-203ENST00000527154 SETBP1Q9Y6X0 1596 aa25.44■■□□□ 1.66
CHMP4A-203ENST00000527154 NUTM2DQ5VT03 806 aaPredicted RBP25.42■■□□□ 1.66
CHMP4A-203ENST00000527154 QTRT2Q9H974 415 aaKnown RBP25.42■■□□□ 1.66
CHMP4A-203ENST00000527154 LAMC1P11047 1609 aa25.4■■□□□ 1.66
CHMP4A-203ENST00000527154 IQGAP3Q86VI3 1631 aa25.39■■□□□ 1.66
CHMP4A-203ENST00000527154 ADGRL3Q9HAR2 1447 aa25.38■■□□□ 1.65
CHMP4A-203ENST00000527154 CHGAP10645 457 aaKnown RBP25.37■■□□□ 1.65
CHMP4A-203ENST00000527154 C8orf37Q96NL8 207 aa25.37■■□□□ 1.65
CHMP4A-203ENST00000527154 METP08581 1390 aa25.35■■□□□ 1.65
CHMP4A-203ENST00000527154 APLP2Q06481 763 aa25.35■■□□□ 1.65
CHMP4A-203ENST00000527154 ATAD2Q6PL18 1390 aa25.33■■□□□ 1.65
CHMP4A-203ENST00000527154 ROCK1Q13464 1354 aa25.32■■□□□ 1.64
CHMP4A-203ENST00000527154 EP400Q96L91 3159 aa25.32■■□□□ 1.64
CHMP4A-203ENST00000527154 DDX17Q92841 729 aaKnown RBP25.32■■□□□ 1.64
CHMP4A-203ENST00000527154 NGLY1Q96IV0 654 aa25.32■■□□□ 1.64
CHMP4A-203ENST00000527154 C1orf167Q5SNV9 1468 aa25.3■■□□□ 1.64
CHMP4A-203ENST00000527154 FNBP4Q8N3X1 1017 aaPredicted RBP25.3■■□□□ 1.64
CHMP4A-203ENST00000527154 SOS2Q07890 1332 aaPredicted RBP25.3■■□□□ 1.64
CHMP4A-203ENST00000527154 NALCNQ8IZF0 1738 aa25.29■■□□□ 1.64
CHMP4A-203ENST00000527154 ATRNO75882 1429 aa25.27■■□□□ 1.64
CHMP4A-203ENST00000527154 PTCH1Q13635 1447 aa25.27■■□□□ 1.64
CHMP4A-203ENST00000527154 PRAG1Q86YV5 1406 aa25.27■■□□□ 1.64
CHMP4A-203ENST00000527154 FAM50AQ14320 339 aaKnown RBP25.26■■□□□ 1.63
CHMP4A-203ENST00000527154 TRPC5Q9UL62 973 aaPredicted RBP25.24■■□□□ 1.63
CHMP4A-203ENST00000527154 COL22A1Q8NFW1 1626 aaPredicted RBP25.23■■□□□ 1.63
CHMP4A-203ENST00000527154 NUP155O75694 1391 aa25.22■■□□□ 1.63
CHMP4A-203ENST00000527154 USP21Q9UK80 565 aa25.22■■□□□ 1.63
CHMP4A-203ENST00000527154 NEXMIFQ5QGS0 1516 aa25.22■■□□□ 1.63
CHMP4A-203ENST00000527154 ADAMTS2O95450 1211 aa25.21■■□□□ 1.63
CHMP4A-203ENST00000527154 ZRANB1Q9UGI0 708 aa25.2■■□□□ 1.62
CHMP4A-203ENST00000527154 MYOM2P54296 1465 aa25.2■■□□□ 1.62
CHMP4A-203ENST00000527154 FOXD1Q16676 465 aa25.19■■□□□ 1.62
CHMP4A-203ENST00000527154 CCDC125Q86Z20 511 aa25.19■■□□□ 1.62
CHMP4A-203ENST00000527154 SPHKAPQ2M3C7 1700 aa25.17■■□□□ 1.62
CHMP4A-203ENST00000527154 BCL9LQ86UU0 1499 aa25.17■■□□□ 1.62
CHMP4A-203ENST00000527154 ORAI2Q96SN7 254 aa25.15■■□□□ 1.62
CHMP4A-203ENST00000527154 ROBO2Q9HCK4 1378 aa25.13■■□□□ 1.61
CHMP4A-203ENST00000527154 CLTCL1P53675 1640 aa25.09■■□□□ 1.61
CHMP4A-203ENST00000527154 ZNF326Q5BKZ1 582 aaKnown RBP25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms