RNA–Protein interactions for RNA: ENST00000524028.1

PTP4A3-206, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 5 BASIC

Gene PTP4A3, Length 963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-206ENST00000524028 GCC2Q8IWJ2 1684 aa28.8■■■□□ 2.2
PTP4A3-206ENST00000524028 RBM33Q96EV2 1170 aaKnown RBP28.79■■■□□ 2.2
PTP4A3-206ENST00000524028 BCANQ96GW7 911 aa28.79■■■□□ 2.2
PTP4A3-206ENST00000524028 RIMS2Q9UQ26 1411 aa28.78■■■□□ 2.2
PTP4A3-206ENST00000524028 TMEM131LA2VDJ0 1609 aa28.78■■■□□ 2.2
PTP4A3-206ENST00000524028 NUP155O75694 1391 aa28.77■■■□□ 2.2
PTP4A3-206ENST00000524028 E9PCH4 1651 aa28.77■■■□□ 2.2
PTP4A3-206ENST00000524028 IQGAP3Q86VI3 1631 aa28.76■■■□□ 2.2
PTP4A3-206ENST00000524028 PROSER2Q86WR7 435 aaPredicted RBP28.76■■■□□ 2.19
PTP4A3-206ENST00000524028 PLEKHG1Q9ULL1 1385 aa28.75■■■□□ 2.19
PTP4A3-206ENST00000524028 CHGAP10645 457 aaKnown RBP28.75■■■□□ 2.19
PTP4A3-206ENST00000524028 MYO5BQ9ULV0 1848 aa28.73■■■□□ 2.19
PTP4A3-206ENST00000524028 PPP1R15AO75807 674 aaPredicted RBP28.72■■■□□ 2.19
PTP4A3-206ENST00000524028 HDGFP51858 240 aaKnown RBP28.72■■■□□ 2.19
PTP4A3-206ENST00000524028 NWD1Q149M9 1564 aa28.71■■■□□ 2.19
PTP4A3-206ENST00000524028 NUTM2DQ5VT03 806 aaPredicted RBP28.7■■■□□ 2.18
PTP4A3-206ENST00000524028 NKTRP30414 1462 aaKnown RBP28.7■■■□□ 2.18
PTP4A3-206ENST00000524028 FAM135BQ49AJ0 1406 aa28.69■■■□□ 2.18
PTP4A3-206ENST00000524028 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.68■■■□□ 2.18
PTP4A3-206ENST00000524028 TBX22Q9Y458 520 aa28.66■■■□□ 2.18
PTP4A3-206ENST00000524028 ADAMTS13Q76LX8 1427 aa28.63■■■□□ 2.17
PTP4A3-206ENST00000524028 RRBP1Q9P2E9 1410 aaKnown RBP28.63■■■□□ 2.17
PTP4A3-206ENST00000524028 PHF23Q9BUL5 403 aaPredicted RBP28.61■■■□□ 2.17
PTP4A3-206ENST00000524028 CHD2O14647 1828 aaKnown RBP28.6■■■□□ 2.17
PTP4A3-206ENST00000524028 MSH6P52701 1360 aa28.59■■■□□ 2.17
PTP4A3-206ENST00000524028 SLAIN2Q9P270 581 aa28.56■■■□□ 2.16
PTP4A3-206ENST00000524028 ROBO1Q9Y6N7 1651 aa28.56■■■□□ 2.16
PTP4A3-206ENST00000524028 NAIPQ13075 1403 aa28.55■■■□□ 2.16
PTP4A3-206ENST00000524028 DIP2AQ14689 1571 aa28.52■■■□□ 2.16
PTP4A3-206ENST00000524028 PIK3R4Q99570 1358 aa28.51■■■□□ 2.16
PTP4A3-206ENST00000524028 NCOA3Q9Y6Q9 1424 aa28.51■■■□□ 2.15
PTP4A3-206ENST00000524028 SPHKAPQ2M3C7 1700 aa28.5■■■□□ 2.15
PTP4A3-206ENST00000524028 RGS17Q9UGC6 210 aaPredicted RBP28.5■■■□□ 2.15
PTP4A3-206ENST00000524028 PTPRUQ92729 1446 aa28.5■■■□□ 2.15
PTP4A3-206ENST00000524028 AMOTL2Q9Y2J4 779 aa28.48■■■□□ 2.15
PTP4A3-206ENST00000524028 ZNF326Q5BKZ1 582 aaKnown RBP28.47■■■□□ 2.15
PTP4A3-206ENST00000524028 C14orf37Q86TY3 774 aa28.46■■■□□ 2.15
PTP4A3-206ENST00000524028 TRPM2O94759 1503 aa28.46■■■□□ 2.15
PTP4A3-206ENST00000524028 CLTCL1P53675 1640 aa28.43■■■□□ 2.14
PTP4A3-206ENST00000524028 NRXN3Q9Y4C0 1643 aa28.43■■■□□ 2.14
PTP4A3-206ENST00000524028 C19orf44Q9H6X5 657 aa28.43■■■□□ 2.14
PTP4A3-206ENST00000524028 HFM1A2PYH4 1435 aa28.42■■■□□ 2.14
PTP4A3-206ENST00000524028 SETBP1Q9Y6X0 1596 aa28.41■■■□□ 2.14
PTP4A3-206ENST00000524028 TRIM52Q96A61 297 aa28.4■■■□□ 2.14
PTP4A3-206ENST00000524028 METP08581 1390 aa28.39■■■□□ 2.14
PTP4A3-206ENST00000524028 CADPS2Q86UW7 1296 aa28.39■■■□□ 2.14
PTP4A3-206ENST00000524028 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.38■■■□□ 2.13
PTP4A3-206ENST00000524028 ATF3P18847 181 aa28.37■■■□□ 2.13
PTP4A3-206ENST00000524028 PHLPP1O60346 1717 aa28.37■■■□□ 2.13
PTP4A3-206ENST00000524028 NEXMIFQ5QGS0 1516 aa28.37■■■□□ 2.13
PTP4A3-206ENST00000524028 XRN1Q8IZH2 1706 aaKnown RBP28.34■■■□□ 2.13
PTP4A3-206ENST00000524028 JCADQ9P266 1359 aa28.34■■■□□ 2.13
PTP4A3-206ENST00000524028 POTEAQ6S8J7 498 aa28.32■■■□□ 2.12
PTP4A3-206ENST00000524028 SLC4A1APQ9BWU0 796 aaKnown RBP28.32■■■□□ 2.12
PTP4A3-206ENST00000524028 COL16A1Q07092 1604 aaPredicted RBP28.32■■■□□ 2.12
PTP4A3-206ENST00000524028 BRINP3Q76B58 766 aa28.29■■■□□ 2.12
PTP4A3-206ENST00000524028 DCCP43146 1447 aa28.27■■■□□ 2.12
PTP4A3-206ENST00000524028 AHDC1Q5TGY3 1603 aaPredicted RBP28.26■■■□□ 2.11
PTP4A3-206ENST00000524028 KIF1BO60333 1816 aa28.26■■■□□ 2.11
PTP4A3-206ENST00000524028 FOXD1Q16676 465 aa28.25■■■□□ 2.11
PTP4A3-206ENST00000524028 VGFO15240 615 aaPredicted RBP28.24■■■□□ 2.11
PTP4A3-206ENST00000524028 MST1RQ04912 1400 aa28.23■■■□□ 2.11
PTP4A3-206ENST00000524028 RPGRIP1LQ68CZ1 1315 aa28.21■■■□□ 2.11
PTP4A3-206ENST00000524028 LRP6O75581 1613 aa28.21■■■□□ 2.11
PTP4A3-206ENST00000524028 ADGRL3Q9HAR2 1447 aa28.2■■■□□ 2.11
PTP4A3-206ENST00000524028 SPATA31A6Q5VVP1 1343 aa28.19■■■□□ 2.1
PTP4A3-206ENST00000524028 ASXL1Q8IXJ9 1541 aa28.18■■■□□ 2.1
PTP4A3-206ENST00000524028 ROBO2Q9HCK4 1378 aa28.15■■■□□ 2.1
PTP4A3-206ENST00000524028 SETD1AO15047 1707 aaKnown RBP28.15■■■□□ 2.1
PTP4A3-206ENST00000524028 NALCNQ8IZF0 1738 aa28.13■■■□□ 2.09
PTP4A3-206ENST00000524028 PTCH1Q13635 1447 aa28.13■■■□□ 2.09
PTP4A3-206ENST00000524028 MPHOSPH9Q99550 1183 aa28.13■■■□□ 2.09
PTP4A3-206ENST00000524028 DDX17Q92841 729 aaKnown RBP28.12■■■□□ 2.09
PTP4A3-206ENST00000524028 SHPRHQ149N8 1683 aa28.12■■■□□ 2.09
PTP4A3-206ENST00000524028 SETD5Q9C0A6 1442 aa28.1■■■□□ 2.09
PTP4A3-206ENST00000524028 PPLO60437 1756 aa28.1■■■□□ 2.09
PTP4A3-206ENST00000524028 MEX3CQ5U5Q3 659 aaKnown RBP28.1■■■□□ 2.09
PTP4A3-206ENST00000524028 ADGRF5Q8IZF2 1346 aa28.09■■■□□ 2.09
PTP4A3-206ENST00000524028 CCDC144AA2RUR9 1427 aa28.09■■■□□ 2.09
PTP4A3-206ENST00000524028 PRAG1Q86YV5 1406 aa28.09■■■□□ 2.09
PTP4A3-206ENST00000524028 C1orf167Q5SNV9 1468 aa28.08■■■□□ 2.09
PTP4A3-206ENST00000524028 NHSL1Q5SYE7 1610 aa28.07■■■□□ 2.08
PTP4A3-206ENST00000524028 NUTM2BA6NNL0 878 aaPredicted RBP28.07■■■□□ 2.08
PTP4A3-206ENST00000524028 NUTM2EB1AL46 878 aaPredicted RBP28.07■■■□□ 2.08
PTP4A3-206ENST00000524028 RGL3Q3MIN7 710 aa28.07■■■□□ 2.08
PTP4A3-206ENST00000524028 NUTM2AQ8IVF1 878 aaPredicted RBP28.07■■■□□ 2.08
PTP4A3-206ENST00000524028 SPATA31E1Q6ZUB1 1445 aa28.07■■■□□ 2.08
PTP4A3-206ENST00000524028 LRRC59Q96AG4 307 aaKnown RBP28.05■■■□□ 2.08
PTP4A3-206ENST00000524028 ZNF772Q68DY9 489 aaPredicted RBP28.03■■■□□ 2.08
PTP4A3-206ENST00000524028 ORAI2Q96SN7 254 aa28.02■■■□□ 2.08
PTP4A3-206ENST00000524028 PNPLA6Q8IY17 1366 aa27.99■■■□□ 2.07
PTP4A3-206ENST00000524028 ANKRD30BQ9BXX2 1392 aa27.99■■■□□ 2.07
PTP4A3-206ENST00000524028 STK26Q9P289 416 aa27.96■■■□□ 2.07
PTP4A3-206ENST00000524028 SOS2Q07890 1332 aaPredicted RBP27.94■■■□□ 2.06
PTP4A3-206ENST00000524028 TMEM132EQ6IEE7 984 aa27.94■■■□□ 2.06
PTP4A3-206ENST00000524028 AFF2P51816 1311 aa27.93■■■□□ 2.06
PTP4A3-206ENST00000524028 LAMC1P11047 1609 aa27.93■■■□□ 2.06
PTP4A3-206ENST00000524028 IFT172Q9UG01 1749 aa27.93■■■□□ 2.06
PTP4A3-206ENST00000524028 WAPLQ7Z5K2 1190 aa27.93■■■□□ 2.06
PTP4A3-206ENST00000524028 PIK3C2GO75747 1445 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms