RNA–Protein interactions for RNA: ENST00000521951.1

PVT1-212, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best) BASIC

Gene PVT1, Length 1,535 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-212ENST00000521951 ARHGAP23Q9P227 1491 aa34.88■■■■□ 3.17
PVT1-212ENST00000521951 PPLO60437 1756 aa34.87■■■■□ 3.17
PVT1-212ENST00000521951 IFT172Q9UG01 1749 aa34.87■■■■□ 3.17
PVT1-212ENST00000521951 DCAF11Q8TEB1 546 aa34.86■■■■□ 3.17
PVT1-212ENST00000521951 ZFYVE9O95405 1425 aa34.86■■■■□ 3.17
PVT1-212ENST00000521951 TIMELESSQ9UNS1 1208 aa34.86■■■■□ 3.17
PVT1-212ENST00000521951 HSPA2P54652 639 aa34.85■■■■□ 3.17
PVT1-212ENST00000521951 NUTM2DQ5VT03 806 aaPredicted RBP34.84■■■■□ 3.17
PVT1-212ENST00000521951 HDGFP51858 240 aaKnown RBP34.82■■■■□ 3.16
PVT1-212ENST00000521951 KDM2AQ9Y2K7 1162 aa34.82■■■■□ 3.16
PVT1-212ENST00000521951 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.81■■■■□ 3.16
PVT1-212ENST00000521951 LTKP29376 864 aa34.81■■■■□ 3.16
PVT1-212ENST00000521951 TXNDC2Q86VQ3 553 aa34.81■■■■□ 3.16
PVT1-212ENST00000521951 EID1Q9Y6B2 187 aa34.8■■■■□ 3.16
PVT1-212ENST00000521951 VGFO15240 615 aaPredicted RBP34.78■■■■□ 3.16
PVT1-212ENST00000521951 ANKLE2Q86XL3 938 aa34.77■■■■□ 3.16
PVT1-212ENST00000521951 STAC3Q96MF2 364 aa34.77■■■■□ 3.16
PVT1-212ENST00000521951 MYOM2P54296 1465 aa34.75■■■■□ 3.15
PVT1-212ENST00000521951 ADGRF5Q8IZF2 1346 aa34.75■■■■□ 3.15
PVT1-212ENST00000521951 PPP1R15AO75807 674 aaPredicted RBP34.75■■■■□ 3.15
PVT1-212ENST00000521951 SCAF11Q99590 1463 aaKnown RBP34.74■■■■□ 3.15
PVT1-212ENST00000521951 NCKAP5LQ9HCH0 1330 aa34.71■■■■□ 3.15
PVT1-212ENST00000521951 POLR1AO95602 1720 aaPredicted RBP34.7■■■■□ 3.15
PVT1-212ENST00000521951 NRXN1Q9ULB1 1477 aa34.68■■■■□ 3.14
PVT1-212ENST00000521951 SENP3Q9H4L4 574 aaPredicted RBP34.67■■■■□ 3.14
PVT1-212ENST00000521951 PLEKHG1Q9ULL1 1385 aa34.66■■■■□ 3.14
PVT1-212ENST00000521951 PRAG1Q86YV5 1406 aa34.64■■■■□ 3.14
PVT1-212ENST00000521951 STRCQ7RTU9 1775 aa34.64■■■■□ 3.14
PVT1-212ENST00000521951 NBPF8Q3BBV2 869 aa34.63■■■■□ 3.13
PVT1-212ENST00000521951 PIK3C2GO75747 1445 aa34.63■■■■□ 3.13
PVT1-212ENST00000521951 MED14O60244 1454 aa34.62■■■■□ 3.13
PVT1-212ENST00000521951 BCANQ96GW7 911 aa34.61■■■■□ 3.13
PVT1-212ENST00000521951 NPHP4O75161 1426 aaPredicted RBP34.6■■■■□ 3.13
PVT1-212ENST00000521951 ZEB1P37275 1124 aaPredicted RBP34.59■■■■□ 3.13
PVT1-212ENST00000521951 SETBP1Q9Y6X0 1596 aa34.59■■■■□ 3.13
PVT1-212ENST00000521951 NRXN3Q9Y4C0 1643 aa34.58■■■■□ 3.13
PVT1-212ENST00000521951 IQGAP1P46940 1657 aa34.58■■■■□ 3.13
PVT1-212ENST00000521951 CFAP70Q5T0N1 1121 aa34.55■■■■□ 3.12
PVT1-212ENST00000521951 C14orf93Q9H972 538 aaKnown RBP34.55■■■■□ 3.12
PVT1-212ENST00000521951 ADAMTS13Q76LX8 1427 aa34.54■■■■□ 3.12
PVT1-212ENST00000521951 ALKQ9UM73 1620 aa34.53■■■■□ 3.12
PVT1-212ENST00000521951 SLC26A8Q96RN1 970 aa34.53■■■■□ 3.12
PVT1-212ENST00000521951 KIAA1210Q9ULL0 1709 aa34.5■■■■□ 3.11
PVT1-212ENST00000521951 TRPM1Q7Z4N2 1603 aa34.49■■■■□ 3.11
PVT1-212ENST00000521951 TBX22Q9Y458 520 aa34.49■■■■□ 3.11
PVT1-212ENST00000521951 LAMC1P11047 1609 aa34.49■■■■□ 3.11
PVT1-212ENST00000521951 SETD1AO15047 1707 aaKnown RBP34.48■■■■□ 3.11
PVT1-212ENST00000521951 NBPF1Q3BBV0 1214 aa34.46■■■■□ 3.11
PVT1-212ENST00000521951 DIP2AQ14689 1571 aa34.46■■■■□ 3.11
PVT1-212ENST00000521951 RALGAPBQ86X10 1494 aa34.43■■■■□ 3.1
PVT1-212ENST00000521951 DMRT2Q9Y5R5 561 aa34.43■■■■□ 3.1
PVT1-212ENST00000521951 TMEM132EQ6IEE7 984 aa34.42■■■■□ 3.1
PVT1-212ENST00000521951 METP08581 1390 aa34.41■■■■□ 3.1
PVT1-212ENST00000521951 ASXL1Q8IXJ9 1541 aa34.4■■■■□ 3.1
PVT1-212ENST00000521951 ROCK2O75116 1388 aaKnown RBP34.38■■■■□ 3.09
PVT1-212ENST00000521951 ADGRB1O14514 1584 aa34.38■■■■□ 3.09
PVT1-212ENST00000521951 GPRASP1Q5JY77 1395 aa34.34■■■■□ 3.09
PVT1-212ENST00000521951 PIK3R4Q99570 1358 aa34.34■■■■□ 3.09
PVT1-212ENST00000521951 PTPRUQ92729 1446 aa34.31■■■■□ 3.08
PVT1-212ENST00000521951 CARD11Q9BXL7 1154 aa34.31■■■■□ 3.08
PVT1-212ENST00000521951 CHD2O14647 1828 aaKnown RBP34.31■■■■□ 3.08
PVT1-212ENST00000521951 YTHDC2Q9H6S0 1430 aaKnown RBP34.31■■■■□ 3.08
PVT1-212ENST00000521951 STK26Q9P289 416 aa34.29■■■■□ 3.08
PVT1-212ENST00000521951 LRPPRCP42704 1394 aaKnown RBP34.28■■■■□ 3.08
PVT1-212ENST00000521951 AMOTL2Q9Y2J4 779 aa34.27■■■■□ 3.08
PVT1-212ENST00000521951 KCNA6P17658 529 aa34.25■■■■□ 3.07
PVT1-212ENST00000521951 TRAK1Q9UPV9 953 aa34.24■■■■□ 3.07
PVT1-212ENST00000521951 ABCC11Q96J66 1382 aa34.24■■■■□ 3.07
PVT1-212ENST00000521951 XRN1Q8IZH2 1706 aaKnown RBP34.22■■■■□ 3.07
PVT1-212ENST00000521951 NWD1Q149M9 1564 aa34.21■■■■□ 3.07
PVT1-212ENST00000521951 KNDC1Q76NI1 1749 aa34.2■■■■□ 3.07
PVT1-212ENST00000521951 STRCP1A6NGW2 1772 aa34.2■■■■□ 3.06
PVT1-212ENST00000521951 TECPR2O15040 1411 aa34.19■■■■□ 3.06
PVT1-212ENST00000521951 ZNF335Q9H4Z2 1342 aaPredicted RBP34.18■■■■□ 3.06
PVT1-212ENST00000521951 DLC1Q96QB1 1528 aa34.15■■■■□ 3.06
PVT1-212ENST00000521951 ARHGEF28Q8N1W1 1705 aaKnown RBP34.15■■■■□ 3.06
PVT1-212ENST00000521951 CPS1P31327 1500 aa34.15■■■■□ 3.06
PVT1-212ENST00000521951 SIRT1Q96EB6 747 aa34.14■■■■□ 3.06
PVT1-212ENST00000521951 ROBO2Q9HCK4 1378 aa34.14■■■■□ 3.06
PVT1-212ENST00000521951 USP47Q96K76 1375 aa34.13■■■■□ 3.05
PVT1-212ENST00000521951 PTCH1Q13635 1447 aa34.12■■■■□ 3.05
PVT1-212ENST00000521951 WAPLQ7Z5K2 1190 aa34.1■■■■□ 3.05
PVT1-212ENST00000521951 NKTRP30414 1462 aaKnown RBP34.1■■■■□ 3.05
PVT1-212ENST00000521951 FAM135BQ49AJ0 1406 aa34.1■■■■□ 3.05
PVT1-212ENST00000521951 EIF4G2P78344 907 aaKnown RBP eCLIP34.09■■■■□ 3.052e-6■■■■■ 30.5
PVT1-212ENST00000521951 PRAM1Q96QH2 718 aa34.09■■■■□ 3.05
PVT1-212ENST00000521951 EIF3AQ14152 1382 aaKnown RBP34.09■■■■□ 3.05
PVT1-212ENST00000521951 POGKQ9P215 609 aa34.08■■■■□ 3.05
PVT1-212ENST00000521951 PLEKHH1Q9ULM0 1364 aa34.07■■■■□ 3.05
PVT1-212ENST00000521951 PROSER2Q86WR7 435 aaPredicted RBP34.07■■■■□ 3.04
PVT1-212ENST00000521951 CENPJQ9HC77 1338 aaPredicted RBP34.06■■■■□ 3.04
PVT1-212ENST00000521951 HSPA5P11021 654 aaKnown RBP34.05■■■■□ 3.04
PVT1-212ENST00000521951 ST20-MTHFSA0A0A6YYL1 179 aa34.04■■■■□ 3.04
PVT1-212ENST00000521951 SAFB2Q14151 953 aaKnown RBP eCLIP34.04■■■■□ 3.04
PVT1-212ENST00000521951 RBM33Q96EV2 1170 aaKnown RBP34.02■■■■□ 3.04
PVT1-212ENST00000521951 LTBP4Q8N2S1 1624 aa34.01■■■■□ 3.04
PVT1-212ENST00000521951 QRICH2Q9H0J4 1663 aa33.99■■■■□ 3.03
PVT1-212ENST00000521951 HIRIP3Q9BW71 556 aaPredicted RBP33.99■■■■□ 3.03
PVT1-212ENST00000521951 LRRC7Q96NW7 1537 aa33.99■■■■□ 3.03
PVT1-212ENST00000521951 TMEM94Q12767 1356 aa33.97■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms