RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 ZNF142P52746 1687 aaPredicted RBP12.77□□□□□ -0.36
CSMD1-208ENST00000520561 RALGAPBQ86X10 1494 aa12.77□□□□□ -0.37
CSMD1-208ENST00000520561 CEP170BQ9Y4F5 1589 aaPredicted RBP12.77□□□□□ -0.37
CSMD1-208ENST00000520561 TRPM1Q7Z4N2 1603 aa12.75□□□□□ -0.37
CSMD1-208ENST00000520561 NRXN1Q9ULB1 1477 aa12.74□□□□□ -0.37
CSMD1-208ENST00000520561 RIMS2Q9UQ26 1411 aa12.73□□□□□ -0.37
CSMD1-208ENST00000520561 NBPF8Q3BBV2 869 aa12.73□□□□□ -0.37
CSMD1-208ENST00000520561 KIAA1210Q9ULL0 1709 aa12.73□□□□□ -0.37
CSMD1-208ENST00000520561 LAMC1P11047 1609 aa12.73□□□□□ -0.37
CSMD1-208ENST00000520561 ZFYVE9O95405 1425 aa12.72□□□□□ -0.37
CSMD1-208ENST00000520561 VGFO15240 615 aaPredicted RBP12.72□□□□□ -0.37
CSMD1-208ENST00000520561 PIK3C2GO75747 1445 aa12.71□□□□□ -0.37
CSMD1-208ENST00000520561 ROCK2O75116 1388 aaKnown RBP12.71□□□□□ -0.37
CSMD1-208ENST00000520561 TMEM2Q9UHN6 1383 aa12.71□□□□□ -0.37
CSMD1-208ENST00000520561 ADGRF5Q8IZF2 1346 aa12.71□□□□□ -0.37
CSMD1-208ENST00000520561 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.71□□□□□ -0.37
CSMD1-208ENST00000520561 SLIT1O75093 1534 aa12.71□□□□□ -0.38
CSMD1-208ENST00000520561 HDGFP51858 240 aaKnown RBP12.7□□□□□ -0.38
CSMD1-208ENST00000520561 SETD1BQ9UPS6 1966 aaKnown RBP12.7□□□□□ -0.38
CSMD1-208ENST00000520561 KDM4FA0A1W2PPD8 638 aa12.69□□□□□ -0.38
CSMD1-208ENST00000520561 THEMISQ8N1K5 641 aaPredicted RBP12.69□□□□□ -0.38
CSMD1-208ENST00000520561 ARHGAP23Q9P227 1491 aa12.69□□□□□ -0.38
CSMD1-208ENST00000520561 GPRASP1Q5JY77 1395 aa12.69□□□□□ -0.38
CSMD1-208ENST00000520561 NUTM2DQ5VT03 806 aaPredicted RBP12.67□□□□□ -0.38
CSMD1-208ENST00000520561 CARD11Q9BXL7 1154 aa12.67□□□□□ -0.38
CSMD1-208ENST00000520561 SETBP1Q9Y6X0 1596 aa12.67□□□□□ -0.38
CSMD1-208ENST00000520561 SCAF11Q99590 1463 aaKnown RBP12.66□□□□□ -0.38
CSMD1-208ENST00000520561 EID1Q9Y6B2 187 aa12.66□□□□□ -0.38
CSMD1-208ENST00000520561 IQGAP1P46940 1657 aa12.65□□□□□ -0.38
CSMD1-208ENST00000520561 EIF4G2P78344 907 aaKnown RBP eCLIP12.65□□□□□ -0.38
CSMD1-208ENST00000520561 USP47Q96K76 1375 aa12.65□□□□□ -0.38
CSMD1-208ENST00000520561 ALKQ9UM73 1620 aa12.64□□□□□ -0.39
CSMD1-208ENST00000520561 PLEKHG1Q9ULL1 1385 aa12.64□□□□□ -0.39
CSMD1-208ENST00000520561 NRXN3Q9Y4C0 1643 aa12.63□□□□□ -0.39
CSMD1-208ENST00000520561 NBPF1Q3BBV0 1214 aa12.63□□□□□ -0.39
CSMD1-208ENST00000520561 CFAP70Q5T0N1 1121 aa12.63□□□□□ -0.39
CSMD1-208ENST00000520561 TXNDC2Q86VQ3 553 aa12.63□□□□□ -0.39
CSMD1-208ENST00000520561 C14orf93Q9H972 538 aaKnown RBP12.63□□□□□ -0.39
CSMD1-208ENST00000520561 EIF3AQ14152 1382 aaKnown RBP12.63□□□□□ -0.39
CSMD1-208ENST00000520561 ADGRB1O14514 1584 aa12.63□□□□□ -0.39
CSMD1-208ENST00000520561 DIP2AQ14689 1571 aa12.63□□□□□ -0.39
CSMD1-208ENST00000520561 POLR1AO95602 1720 aaPredicted RBP12.62□□□□□ -0.39
CSMD1-208ENST00000520561 SETD1AO15047 1707 aaKnown RBP12.62□□□□□ -0.39
CSMD1-208ENST00000520561 ASXL1Q8IXJ9 1541 aa12.62□□□□□ -0.39
CSMD1-208ENST00000520561 ZNF316A6NFI3 1004 aaPredicted RBP12.61□□□□□ -0.39
CSMD1-208ENST00000520561 BCANQ96GW7 911 aa12.61□□□□□ -0.39
CSMD1-208ENST00000520561 HSPA5P11021 654 aaKnown RBP12.6□□□□□ -0.39
CSMD1-208ENST00000520561 LTKP29376 864 aa12.6□□□□□ -0.39
CSMD1-208ENST00000520561 ANKLE2Q86XL3 938 aa12.6□□□□□ -0.39
CSMD1-208ENST00000520561 LMTK3Q96Q04 1460 aa12.59□□□□□ -0.39
CSMD1-208ENST00000520561 SENP3Q9H4L4 574 aaPredicted RBP12.59□□□□□ -0.39
CSMD1-208ENST00000520561 ADAMTS13Q76LX8 1427 aa12.58□□□□□ -0.4
CSMD1-208ENST00000520561 NPHP4O75161 1426 aaPredicted RBP12.57□□□□□ -0.4
CSMD1-208ENST00000520561 YTHDC2Q9H6S0 1430 aaKnown RBP12.57□□□□□ -0.4
CSMD1-208ENST00000520561 KNDC1Q76NI1 1749 aa12.57□□□□□ -0.4
CSMD1-208ENST00000520561 ARHGEF28Q8N1W1 1705 aaKnown RBP12.57□□□□□ -0.4
CSMD1-208ENST00000520561 TMEM132EQ6IEE7 984 aa12.56□□□□□ -0.4
CSMD1-208ENST00000520561 MED14O60244 1454 aa12.56□□□□□ -0.4
CSMD1-208ENST00000520561 HIRIP3Q9BW71 556 aaPredicted RBP12.55□□□□□ -0.4
CSMD1-208ENST00000520561 DLC1Q96QB1 1528 aa12.55□□□□□ -0.4
CSMD1-208ENST00000520561 LRPPRCP42704 1394 aaKnown RBP12.55□□□□□ -0.4
CSMD1-208ENST00000520561 CPS1P31327 1500 aa12.54□□□□□ -0.4
CSMD1-208ENST00000520561 ST20-MTHFSA0A0A6YYL1 179 aa12.54□□□□□ -0.4
CSMD1-208ENST00000520561 QRICH2Q9H0J4 1663 aa12.54□□□□□ -0.4
CSMD1-208ENST00000520561 METP08581 1390 aa12.54□□□□□ -0.4
CSMD1-208ENST00000520561 TRAK1Q9UPV9 953 aa12.53□□□□□ -0.4
CSMD1-208ENST00000520561 TBX22Q9Y458 520 aa12.53□□□□□ -0.4
CSMD1-208ENST00000520561 PIK3R4Q99570 1358 aa12.53□□□□□ -0.4
CSMD1-208ENST00000520561 SLC26A8Q96RN1 970 aa12.52□□□□□ -0.41
CSMD1-208ENST00000520561 STK26Q9P289 416 aa12.52□□□□□ -0.41
CSMD1-208ENST00000520561 CENPJQ9HC77 1338 aaPredicted RBP12.52□□□□□ -0.41
CSMD1-208ENST00000520561 NCKAP5LQ9HCH0 1330 aa12.52□□□□□ -0.41
CSMD1-208ENST00000520561 HSPA2P54652 639 aa12.51□□□□□ -0.41
CSMD1-208ENST00000520561 ABCC11Q96J66 1382 aa12.51□□□□□ -0.41
CSMD1-208ENST00000520561 TECPR2O15040 1411 aa12.51□□□□□ -0.41
CSMD1-208ENST00000520561 XRN1Q8IZH2 1706 aaKnown RBP12.51□□□□□ -0.41
CSMD1-208ENST00000520561 SLC24A1O60721 1099 aa12.5□□□□□ -0.41
CSMD1-208ENST00000520561 SBNO2Q9Y2G9 1366 aa12.5□□□□□ -0.41
CSMD1-208ENST00000520561 PTCH1Q13635 1447 aa12.49□□□□□ -0.41
CSMD1-208ENST00000520561 FAM135BQ49AJ0 1406 aa12.49□□□□□ -0.41
CSMD1-208ENST00000520561 CCDC7Q96M83 1385 aa12.48□□□□□ -0.41
CSMD1-208ENST00000520561 TMF1P82094 1093 aa12.48□□□□□ -0.41
CSMD1-208ENST00000520561 POGKQ9P215 609 aa12.48□□□□□ -0.41
CSMD1-208ENST00000520561 NWD1Q149M9 1564 aa12.47□□□□□ -0.41
CSMD1-208ENST00000520561 PTPRUQ92729 1446 aa12.47□□□□□ -0.41
CSMD1-208ENST00000520561 PRAM1Q96QH2 718 aa12.47□□□□□ -0.41
CSMD1-208ENST00000520561 TESK2Q96S53 571 aa12.47□□□□□ -0.41
CSMD1-208ENST00000520561 STRCQ7RTU9 1775 aa12.47□□□□□ -0.41
CSMD1-208ENST00000520561 KIF7Q2M1P5 1343 aa12.46□□□□□ -0.41
CSMD1-208ENST00000520561 WASHC2AQ641Q2 1341 aa12.46□□□□□ -0.41
CSMD1-208ENST00000520561 CDCA8Q53HL2 280 aa12.46□□□□□ -0.41
CSMD1-208ENST00000520561 SIRT1Q96EB6 747 aa12.46□□□□□ -0.41
CSMD1-208ENST00000520561 CHD2O14647 1828 aaKnown RBP12.46□□□□□ -0.42
CSMD1-208ENST00000520561 DISP3Q9P2K9 1392 aa12.45□□□□□ -0.42
CSMD1-208ENST00000520561 POLR3GLQ9BT43 218 aa12.45□□□□□ -0.42
CSMD1-208ENST00000520561 AMOTL2Q9Y2J4 779 aa12.45□□□□□ -0.42
CSMD1-208ENST00000520561 ROBO2Q9HCK4 1378 aa12.44□□□□□ -0.42
CSMD1-208ENST00000520561 TULP4Q9NRJ4 1543 aa12.44□□□□□ -0.42
CSMD1-208ENST00000520561 SAFB2Q14151 953 aaKnown RBP eCLIP12.44□□□□□ -0.42
CSMD1-208ENST00000520561 NKTRP30414 1462 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms