RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 KIAA1210Q9ULL0 1709 aa12.26□□□□□ -0.45
VAPB-206ENST00000520497 STRCQ7RTU9 1775 aa12.25□□□□□ -0.45
VAPB-206ENST00000520497 NEXMIFQ5QGS0 1516 aa12.24□□□□□ -0.45
VAPB-206ENST00000520497 FBXO31Q5XUX0 539 aaPredicted RBP12.24□□□□□ -0.45
VAPB-206ENST00000520497 ESF1Q9H501 851 aaKnown RBP12.24□□□□□ -0.45
VAPB-206ENST00000520497 ZNF142P52746 1687 aaPredicted RBP12.23□□□□□ -0.45
VAPB-206ENST00000520497 MYO3AQ8NEV4 1616 aa12.23□□□□□ -0.45
VAPB-206ENST00000520497 MYOM2P54296 1465 aa12.23□□□□□ -0.45
VAPB-206ENST00000520497 CERKQ8TCT0 537 aa12.23□□□□□ -0.45
VAPB-206ENST00000520497 SLC52A1Q9NWF4 448 aa12.23□□□□□ -0.45
VAPB-206ENST00000520497 LAMC1P11047 1609 aa12.22□□□□□ -0.45
VAPB-206ENST00000520497 RALGAPBQ86X10 1494 aa12.22□□□□□ -0.45
VAPB-206ENST00000520497 PRAG1Q86YV5 1406 aa12.22□□□□□ -0.45
VAPB-206ENST00000520497 NRXN1Q9ULB1 1477 aa12.21□□□□□ -0.45
VAPB-206ENST00000520497 POLR1AO95602 1720 aaPredicted RBP12.2□□□□□ -0.46
VAPB-206ENST00000520497 TNRQ92752 1358 aa12.2□□□□□ -0.46
VAPB-206ENST00000520497 IDI1Q13907 227 aa12.2□□□□□ -0.46
VAPB-206ENST00000520497 NBPF8Q3BBV2 869 aa12.2□□□□□ -0.46
VAPB-206ENST00000520497 NLRP1Q9C000 1473 aa12.2□□□□□ -0.46
VAPB-206ENST00000520497 RGL3Q3MIN7 710 aa12.19□□□□□ -0.46
VAPB-206ENST00000520497 DCAF11Q8TEB1 546 aa12.19□□□□□ -0.46
VAPB-206ENST00000520497 A2ML1A8K2U0 1454 aa12.19□□□□□ -0.46
VAPB-206ENST00000520497 STAC3Q96MF2 364 aa12.18□□□□□ -0.46
VAPB-206ENST00000520497 IQGAP1P46940 1657 aa12.18□□□□□ -0.46
VAPB-206ENST00000520497 SETD1AO15047 1707 aaKnown RBP12.17□□□□□ -0.46
VAPB-206ENST00000520497 RPGRIP1LQ68CZ1 1315 aa12.16□□□□□ -0.46
VAPB-206ENST00000520497 CNKSR2Q8WXI2 1034 aa12.16□□□□□ -0.46
VAPB-206ENST00000520497 ZFYVE9O95405 1425 aa12.16□□□□□ -0.46
VAPB-206ENST00000520497 CEP170BQ9Y4F5 1589 aaPredicted RBP12.16□□□□□ -0.46
VAPB-206ENST00000520497 NCKAP5LQ9HCH0 1330 aa12.15□□□□□ -0.46
VAPB-206ENST00000520497 PIK3C2GO75747 1445 aa12.15□□□□□ -0.46
VAPB-206ENST00000520497 KDM2AQ9Y2K7 1162 aa12.15□□□□□ -0.46
VAPB-206ENST00000520497 GPRASP1Q5JY77 1395 aa12.15□□□□□ -0.46
VAPB-206ENST00000520497 SETBP1Q9Y6X0 1596 aa12.14□□□□□ -0.47
VAPB-206ENST00000520497 NRXN3Q9Y4C0 1643 aa12.14□□□□□ -0.47
VAPB-206ENST00000520497 CHGAP10645 457 aaKnown RBP12.13□□□□□ -0.47
VAPB-206ENST00000520497 SLIT1O75093 1534 aa12.12□□□□□ -0.47
VAPB-206ENST00000520497 LTBP4Q8N2S1 1624 aa12.12□□□□□ -0.47
VAPB-206ENST00000520497 ZNF326Q5BKZ1 582 aaKnown RBP12.12□□□□□ -0.47
VAPB-206ENST00000520497 ADGRF5Q8IZF2 1346 aa12.11□□□□□ -0.47
VAPB-206ENST00000520497 ARHGAP23Q9P227 1491 aa12.11□□□□□ -0.47
VAPB-206ENST00000520497 HOXD11P31277 338 aaPredicted RBP12.11□□□□□ -0.47
VAPB-206ENST00000520497 RIMS2Q9UQ26 1411 aa12.11□□□□□ -0.47
VAPB-206ENST00000520497 ADGRB1O14514 1584 aa12.1□□□□□ -0.47
VAPB-206ENST00000520497 ROCK2O75116 1388 aaKnown RBP12.1□□□□□ -0.47
VAPB-206ENST00000520497 ZNF316A6NFI3 1004 aaPredicted RBP12.1□□□□□ -0.47
VAPB-206ENST00000520497 ARHGEF28Q8N1W1 1705 aaKnown RBP12.1□□□□□ -0.47
VAPB-206ENST00000520497 ASXL1Q8IXJ9 1541 aa12.09□□□□□ -0.47
VAPB-206ENST00000520497 ZNF335Q9H4Z2 1342 aaPredicted RBP12.09□□□□□ -0.47
VAPB-206ENST00000520497 ALKQ9UM73 1620 aa12.08□□□□□ -0.48
VAPB-206ENST00000520497 TMEM2Q9UHN6 1383 aa12.08□□□□□ -0.48
VAPB-206ENST00000520497 VGFO15240 615 aaPredicted RBP12.08□□□□□ -0.48
VAPB-206ENST00000520497 STAG3Q9UJ98 1225 aa12.08□□□□□ -0.48
VAPB-206ENST00000520497 USP47Q96K76 1375 aa12.07□□□□□ -0.48
VAPB-206ENST00000520497 NBPF1Q3BBV0 1214 aa12.07□□□□□ -0.48
VAPB-206ENST00000520497 KNDC1Q76NI1 1749 aa12.06□□□□□ -0.48
VAPB-206ENST00000520497 EIF4G2P78344 907 aaKnown RBP eCLIP12.06□□□□□ -0.48
VAPB-206ENST00000520497 HSPA5P11021 654 aaKnown RBP12.05□□□□□ -0.48
VAPB-206ENST00000520497 CARD11Q9BXL7 1154 aa12.05□□□□□ -0.48
VAPB-206ENST00000520497 C14orf93Q9H972 538 aaKnown RBP12.05□□□□□ -0.48
VAPB-206ENST00000520497 SCAF11Q99590 1463 aaKnown RBP12.05□□□□□ -0.48
VAPB-206ENST00000520497 QRICH2Q9H0J4 1663 aa12.05□□□□□ -0.48
VAPB-206ENST00000520497 CFAP70Q5T0N1 1121 aa12.04□□□□□ -0.48
VAPB-206ENST00000520497 NUTM2DQ5VT03 806 aaPredicted RBP12.04□□□□□ -0.48
VAPB-206ENST00000520497 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.04□□□□□ -0.48
VAPB-206ENST00000520497 RNF216Q9NWF9 866 aaPredicted RBP12.04□□□□□ -0.48
VAPB-206ENST00000520497 DIP2AQ14689 1571 aa12.04□□□□□ -0.48
VAPB-206ENST00000520497 RNF39Q9H2S5 420 aa12.03□□□□□ -0.48
VAPB-206ENST00000520497 THEMISQ8N1K5 641 aaPredicted RBP12.02□□□□□ -0.49
VAPB-206ENST00000520497 PLEKHG1Q9ULL1 1385 aa12.02□□□□□ -0.49
VAPB-206ENST00000520497 MED14O60244 1454 aa12.02□□□□□ -0.49
VAPB-206ENST00000520497 DCAF8L1A6NGE4 600 aa12.01□□□□□ -0.49
VAPB-206ENST00000520497 ILDR2Q71H61 639 aa12.01□□□□□ -0.49
VAPB-206ENST00000520497 ADAMTS13Q76LX8 1427 aa12.01□□□□□ -0.49
VAPB-206ENST00000520497 CHD2O14647 1828 aaKnown RBP12□□□□□ -0.49
VAPB-206ENST00000520497 HDGFP51858 240 aaKnown RBP12□□□□□ -0.49
VAPB-206ENST00000520497 HIRIP3Q9BW71 556 aaPredicted RBP12□□□□□ -0.49
VAPB-206ENST00000520497 LTKP29376 864 aa11.99□□□□□ -0.49
VAPB-206ENST00000520497 DLC1Q96QB1 1528 aa11.99□□□□□ -0.49
VAPB-206ENST00000520497 XRN1Q8IZH2 1706 aaKnown RBP11.98□□□□□ -0.49
VAPB-206ENST00000520497 CPS1P31327 1500 aa11.98□□□□□ -0.49
VAPB-206ENST00000520497 EIF3AQ14152 1382 aaKnown RBP11.98□□□□□ -0.49
VAPB-206ENST00000520497 YTHDC2Q9H6S0 1430 aaKnown RBP11.97□□□□□ -0.49
VAPB-206ENST00000520497 ST20-MTHFSA0A0A6YYL1 179 aa11.97□□□□□ -0.49
VAPB-206ENST00000520497 MYOM1P52179 1685 aa11.97□□□□□ -0.49
VAPB-206ENST00000520497 DISP3Q9P2K9 1392 aa11.96□□□□□ -0.49
VAPB-206ENST00000520497 SBNO2Q9Y2G9 1366 aa11.96□□□□□ -0.49
VAPB-206ENST00000520497 UBAP1LF5GYI3 381 aa11.96□□□□□ -0.49
VAPB-206ENST00000520497 TXNDC2Q86VQ3 553 aa11.96□□□□□ -0.49
VAPB-206ENST00000520497 EID1Q9Y6B2 187 aa11.96□□□□□ -0.49
VAPB-206ENST00000520497 TECPR2O15040 1411 aa11.95□□□□□ -0.5
VAPB-206ENST00000520497 CCDC7Q96M83 1385 aa11.95□□□□□ -0.5
VAPB-206ENST00000520497 WASHC2AQ641Q2 1341 aa11.95□□□□□ -0.5
VAPB-206ENST00000520497 C11orf95C9JLR9 678 aaPredicted RBP11.95□□□□□ -0.5
VAPB-206ENST00000520497 NCBP3Q53F19 620 aaKnown RBP11.95□□□□□ -0.5
VAPB-206ENST00000520497 TMEM132EQ6IEE7 984 aa11.95□□□□□ -0.5
VAPB-206ENST00000520497 TESK2Q96S53 571 aa11.95□□□□□ -0.5
VAPB-206ENST00000520497 METP08581 1390 aa11.94□□□□□ -0.5
VAPB-206ENST00000520497 LRPPRCP42704 1394 aaKnown RBP11.94□□□□□ -0.5
VAPB-206ENST00000520497 IQSEC2Q5JU85 1478 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms