RNA–Protein interactions for RNA: ENST00000519481.5

PVT1-208, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 542 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-208ENST00000519481 ALKQ9UM73 1620 aa16.59■□□□□ 0.25
PVT1-208ENST00000519481 UNC13BO14795 1591 aa16.59■□□□□ 0.25
PVT1-208ENST00000519481 PPARGC1BQ86YN6 1023 aaKnown RBP16.58■□□□□ 0.24
PVT1-208ENST00000519481 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.58■□□□□ 0.24
PVT1-208ENST00000519481 GCC2Q8IWJ2 1684 aa16.58■□□□□ 0.24
PVT1-208ENST00000519481 MED1Q15648 1581 aaPredicted RBP16.57■□□□□ 0.24
PVT1-208ENST00000519481 NUP155O75694 1391 aa16.57■□□□□ 0.24
PVT1-208ENST00000519481 TMEM94Q12767 1356 aa16.57■□□□□ 0.24
PVT1-208ENST00000519481 RIMS2Q9UQ26 1411 aa16.56■□□□□ 0.24
PVT1-208ENST00000519481 PLEKHG1Q9ULL1 1385 aa16.55■□□□□ 0.24
PVT1-208ENST00000519481 NKTRP30414 1462 aaKnown RBP16.54■□□□□ 0.24
PVT1-208ENST00000519481 ZFYVE9O95405 1425 aa16.53■□□□□ 0.24
PVT1-208ENST00000519481 FAM135BQ49AJ0 1406 aa16.53■□□□□ 0.24
PVT1-208ENST00000519481 IQGAP3Q86VI3 1631 aa16.52■□□□□ 0.24
PVT1-208ENST00000519481 TMEM131LA2VDJ0 1609 aa16.52■□□□□ 0.23
PVT1-208ENST00000519481 XIRP1Q702N8 1843 aaKnown RBP16.52■□□□□ 0.23
PVT1-208ENST00000519481 MSH6P52701 1360 aa16.51■□□□□ 0.23
PVT1-208ENST00000519481 E9PCH4 1651 aa16.51■□□□□ 0.23
PVT1-208ENST00000519481 RBM33Q96EV2 1170 aaKnown RBP16.51■□□□□ 0.23
PVT1-208ENST00000519481 TBX22Q9Y458 520 aa16.51■□□□□ 0.23
PVT1-208ENST00000519481 NWD1Q149M9 1564 aa16.5■□□□□ 0.23
PVT1-208ENST00000519481 MYO5BQ9ULV0 1848 aa16.49■□□□□ 0.23
PVT1-208ENST00000519481 NUTM2DQ5VT03 806 aaPredicted RBP16.48■□□□□ 0.23
PVT1-208ENST00000519481 C14orf37Q86TY3 774 aa16.48■□□□□ 0.23
PVT1-208ENST00000519481 ZNF326Q5BKZ1 582 aaKnown RBP16.45■□□□□ 0.22
PVT1-208ENST00000519481 SLAIN2Q9P270 581 aa16.45■□□□□ 0.22
PVT1-208ENST00000519481 PIK3R4Q99570 1358 aa16.45■□□□□ 0.22
PVT1-208ENST00000519481 NCOA3Q9Y6Q9 1424 aa16.45■□□□□ 0.22
PVT1-208ENST00000519481 DIP2AQ14689 1571 aa16.44■□□□□ 0.22
PVT1-208ENST00000519481 CHD2O14647 1828 aaKnown RBP16.44■□□□□ 0.22
PVT1-208ENST00000519481 RRBP1Q9P2E9 1410 aaKnown RBP16.44■□□□□ 0.22
PVT1-208ENST00000519481 ADAMTS13Q76LX8 1427 aa16.43■□□□□ 0.22
PVT1-208ENST00000519481 ROBO1Q9Y6N7 1651 aa16.42■□□□□ 0.22
PVT1-208ENST00000519481 ATF3P18847 181 aa16.41■□□□□ 0.22
PVT1-208ENST00000519481 CADPS2Q86UW7 1296 aa16.41■□□□□ 0.22
PVT1-208ENST00000519481 TRPM2O94759 1503 aa16.4■□□□□ 0.22
PVT1-208ENST00000519481 C19orf44Q9H6X5 657 aa16.4■□□□□ 0.22
PVT1-208ENST00000519481 AMOTL2Q9Y2J4 779 aa16.4■□□□□ 0.22
PVT1-208ENST00000519481 SPHKAPQ2M3C7 1700 aa16.39■□□□□ 0.21
PVT1-208ENST00000519481 TRIM52Q96A61 297 aa16.39■□□□□ 0.21
PVT1-208ENST00000519481 NAIPQ13075 1403 aa16.38■□□□□ 0.21
PVT1-208ENST00000519481 JCADQ9P266 1359 aa16.36■□□□□ 0.21
PVT1-208ENST00000519481 PHLPP1O60346 1717 aa16.33■□□□□ 0.21
PVT1-208ENST00000519481 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.2
PVT1-208ENST00000519481 RGS17Q9UGC6 210 aaPredicted RBP16.33■□□□□ 0.2
PVT1-208ENST00000519481 HFM1A2PYH4 1435 aa16.33■□□□□ 0.2
PVT1-208ENST00000519481 PTPRUQ92729 1446 aa16.33■□□□□ 0.2
PVT1-208ENST00000519481 SETBP1Q9Y6X0 1596 aa16.33■□□□□ 0.2
PVT1-208ENST00000519481 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.31■□□□□ 0.2
PVT1-208ENST00000519481 CLTCL1P53675 1640 aa16.31■□□□□ 0.2
PVT1-208ENST00000519481 VGFO15240 615 aaPredicted RBP16.31■□□□□ 0.2
PVT1-208ENST00000519481 DCCP43146 1447 aa16.3■□□□□ 0.2
PVT1-208ENST00000519481 METP08581 1390 aa16.29■□□□□ 0.2
PVT1-208ENST00000519481 KIF1BO60333 1816 aa16.29■□□□□ 0.2
PVT1-208ENST00000519481 SPATA31A6Q5VVP1 1343 aa16.28■□□□□ 0.2
PVT1-208ENST00000519481 RPGRIP1LQ68CZ1 1315 aa16.28■□□□□ 0.2
PVT1-208ENST00000519481 NRXN3Q9Y4C0 1643 aa16.28■□□□□ 0.2
PVT1-208ENST00000519481 MEX3CQ5U5Q3 659 aaKnown RBP16.28■□□□□ 0.2
PVT1-208ENST00000519481 NEXMIFQ5QGS0 1516 aa16.28■□□□□ 0.2
PVT1-208ENST00000519481 POTEAQ6S8J7 498 aa16.27■□□□□ 0.2
PVT1-208ENST00000519481 BRINP3Q76B58 766 aa16.27■□□□□ 0.2
PVT1-208ENST00000519481 XRN1Q8IZH2 1706 aaKnown RBP16.27■□□□□ 0.19
PVT1-208ENST00000519481 COL16A1Q07092 1604 aaPredicted RBP16.26■□□□□ 0.19
PVT1-208ENST00000519481 AHDC1Q5TGY3 1603 aaPredicted RBP16.26■□□□□ 0.19
PVT1-208ENST00000519481 ADGRL3Q9HAR2 1447 aa16.23■□□□□ 0.19
PVT1-208ENST00000519481 MST1RQ04912 1400 aa16.21■□□□□ 0.19
PVT1-208ENST00000519481 ZNF772Q68DY9 489 aaPredicted RBP16.21■□□□□ 0.19
PVT1-208ENST00000519481 ACIN1Q9UKV3 1341 aaKnown RBP16.2■□□□□ 0.18
PVT1-208ENST00000519481 ASXL1Q8IXJ9 1541 aa16.2■□□□□ 0.18
PVT1-208ENST00000519481 LRRC59Q96AG4 307 aaKnown RBP16.2■□□□□ 0.18
PVT1-208ENST00000519481 CCDC144AA2RUR9 1427 aa16.19■□□□□ 0.18
PVT1-208ENST00000519481 NUTM2BA6NNL0 878 aaPredicted RBP16.19■□□□□ 0.18
PVT1-208ENST00000519481 NUTM2EB1AL46 878 aaPredicted RBP16.19■□□□□ 0.18
PVT1-208ENST00000519481 NUTM2AQ8IVF1 878 aaPredicted RBP16.19■□□□□ 0.18
PVT1-208ENST00000519481 PTCH1Q13635 1447 aa16.19■□□□□ 0.18
PVT1-208ENST00000519481 SHPRHQ149N8 1683 aa16.18■□□□□ 0.18
PVT1-208ENST00000519481 MPHOSPH9Q99550 1183 aa16.18■□□□□ 0.18
PVT1-208ENST00000519481 SETD5Q9C0A6 1442 aa16.18■□□□□ 0.18
PVT1-208ENST00000519481 LRP6O75581 1613 aa16.17■□□□□ 0.18
PVT1-208ENST00000519481 RGL3Q3MIN7 710 aa16.17■□□□□ 0.18
PVT1-208ENST00000519481 ROBO2Q9HCK4 1378 aa16.15■□□□□ 0.18
PVT1-208ENST00000519481 NALCNQ8IZF0 1738 aa16.15■□□□□ 0.18
PVT1-208ENST00000519481 C1orf167Q5SNV9 1468 aa16.15■□□□□ 0.18
PVT1-208ENST00000519481 ANKRD30BQ9BXX2 1392 aa16.14■□□□□ 0.17
PVT1-208ENST00000519481 PPLO60437 1756 aa16.14■□□□□ 0.17
PVT1-208ENST00000519481 NHSL1Q5SYE7 1610 aa16.14■□□□□ 0.17
PVT1-208ENST00000519481 PRAG1Q86YV5 1406 aa16.13■□□□□ 0.17
PVT1-208ENST00000519481 DDX17Q92841 729 aaKnown RBP16.13■□□□□ 0.17
PVT1-208ENST00000519481 SETD1AO15047 1707 aaKnown RBP16.12■□□□□ 0.17
PVT1-208ENST00000519481 ADGRF5Q8IZF2 1346 aa16.12■□□□□ 0.17
PVT1-208ENST00000519481 RXRBP28702 533 aa16.11■□□□□ 0.17
PVT1-208ENST00000519481 ORAI2Q96SN7 254 aa16.1■□□□□ 0.17
PVT1-208ENST00000519481 STK26Q9P289 416 aa16.1■□□□□ 0.17
PVT1-208ENST00000519481 AFF2P51816 1311 aa16.1■□□□□ 0.17
PVT1-208ENST00000519481 PNPLA6Q8IY17 1366 aa16.1■□□□□ 0.17
PVT1-208ENST00000519481 SPATA31E1Q6ZUB1 1445 aa16.1■□□□□ 0.17
PVT1-208ENST00000519481 C8orf37Q96NL8 207 aa16.09■□□□□ 0.17
PVT1-208ENST00000519481 ESCO1Q5FWF5 840 aa16.07■□□□□ 0.16
PVT1-208ENST00000519481 SOS2Q07890 1332 aaPredicted RBP16.07■□□□□ 0.16
PVT1-208ENST00000519481 LRPPRCP42704 1394 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms