RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 SEPT9Q9UHD8 586 aaPredicted RBP10.97□□□□□ -0.65
HMGCS1-207ENST00000514610 GTF3C3Q9Y5Q9 886 aa10.97□□□□□ -0.65
HMGCS1-207ENST00000514610 DAXXQ9UER7 740 aaPredicted RBP10.96□□□□□ -0.65
HMGCS1-207ENST00000514610 BEGAINQ9BUH8 593 aa10.94□□□□□ -0.66
HMGCS1-207ENST00000514610 LSM11P83369 360 aaKnown RBP eCLIP10.93□□□□□ -0.66
HMGCS1-207ENST00000514610 BHMG1C9JSJ3 638 aaPredicted RBP10.92□□□□□ -0.66
HMGCS1-207ENST00000514610 TK2O00142 265 aa10.92□□□□□ -0.66
HMGCS1-207ENST00000514610 RNF166Q96A37 237 aaPredicted RBP10.91□□□□□ -0.66
HMGCS1-207ENST00000514610 CD46P15529 392 aa10.9□□□□□ -0.66
HMGCS1-207ENST00000514610 ADGRD1Q6QNK2 874 aa10.9□□□□□ -0.66
HMGCS1-207ENST00000514610 DDX11L8A8MPP1 907 aa10.89□□□□□ -0.67
HMGCS1-207ENST00000514610 FAM98CQ17RN3 349 aaKnown RBP10.89□□□□□ -0.67
HMGCS1-207ENST00000514610 SWT1Q5T5J6 900 aaKnown RBP10.89□□□□□ -0.67
HMGCS1-207ENST00000514610 MYT1LQ9UL68 1186 aa10.88□□□□□ -0.67
HMGCS1-207ENST00000514610 HRO43593 1189 aa10.87□□□□□ -0.67
HMGCS1-207ENST00000514610 SH3D19Q5HYK7 790 aa10.86□□□□□ -0.67
HMGCS1-207ENST00000514610 LAPTM4BQ86VI4 370 aa10.86□□□□□ -0.67
HMGCS1-207ENST00000514610 SULF1Q8IWU6 871 aa10.86□□□□□ -0.67
HMGCS1-207ENST00000514610 NBPF3Q9H094 633 aa10.86□□□□□ -0.67
HMGCS1-207ENST00000514610 SLC10A3P09131 477 aa10.85□□□□□ -0.67
HMGCS1-207ENST00000514610 GOPCQ9HD26 462 aa10.85□□□□□ -0.67
HMGCS1-207ENST00000514610 ANKRD13DQ6ZTN6 518 aa10.84□□□□□ -0.67
HMGCS1-207ENST00000514610 SAMD7Q7Z3H4 446 aa10.84□□□□□ -0.67
HMGCS1-207ENST00000514610 TBC1D2Q9BYX2 928 aa10.84□□□□□ -0.67
HMGCS1-207ENST00000514610 MYSM1Q5VVJ2 828 aa10.83□□□□□ -0.68
HMGCS1-207ENST00000514610 RDH13Q8NBN7 331 aa10.83□□□□□ -0.68
HMGCS1-207ENST00000514610 SPIRE2Q8WWL2 714 aa10.83□□□□□ -0.68
HMGCS1-207ENST00000514610 ZFRQ96KR1 1074 aaKnown RBP10.83□□□□□ -0.68
HMGCS1-207ENST00000514610 MRPL50Q8N5N7 158 aaKnown RBP10.82□□□□□ -0.68
HMGCS1-207ENST00000514610 SKIV2LQ15477 1246 aaKnown RBP10.81□□□□□ -0.68
HMGCS1-207ENST00000514610 RSPH6AQ9H0K4 717 aa10.81□□□□□ -0.68
HMGCS1-207ENST00000514610 PROCA1Q8NCQ7 364 aaPredicted RBP10.8□□□□□ -0.68
HMGCS1-207ENST00000514610 POLR3EQ9NVU0 708 aa10.8□□□□□ -0.68
HMGCS1-207ENST00000514610 PCMTD1Q96MG8 357 aaPredicted RBP10.79□□□□□ -0.68
HMGCS1-207ENST00000514610 TIMELESSQ9UNS1 1208 aa10.79□□□□□ -0.68
HMGCS1-207ENST00000514610 GCGRP47871 477 aa10.78□□□□□ -0.68
HMGCS1-207ENST00000514610 HDGFP51858 240 aaKnown RBP10.77□□□□□ -0.69
HMGCS1-207ENST00000514610 SLF2Q8IX21 1173 aa10.77□□□□□ -0.69
HMGCS1-207ENST00000514610 LIMD1Q9UGP4 676 aa10.77□□□□□ -0.69
HMGCS1-207ENST00000514610 NUTM1Q86Y26 1132 aa10.76□□□□□ -0.69
HMGCS1-207ENST00000514610 MOXD2PA6NHM9 499 aa10.75□□□□□ -0.69
HMGCS1-207ENST00000514610 RNF40O75150 1001 aa10.75□□□□□ -0.69
HMGCS1-207ENST00000514610 KDM4AO75164 1064 aa10.75□□□□□ -0.69
HMGCS1-207ENST00000514610 CLK2P49760 499 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-207ENST00000514610 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.75□□□□□ -0.696e-16■■□□□ 12.1
HMGCS1-207ENST00000514610 NDUFV2P19404 249 aa10.74□□□□□ -0.69
HMGCS1-207ENST00000514610 DIXDC1Q155Q3 683 aa10.74□□□□□ -0.69
HMGCS1-207ENST00000514610 FBXO31Q5XUX0 539 aaPredicted RBP10.74□□□□□ -0.69
HMGCS1-207ENST00000514610 RIC3Q7Z5B4 369 aa10.74□□□□□ -0.69
HMGCS1-207ENST00000514610 LRCH3Q96II8 777 aa10.74□□□□□ -0.69
HMGCS1-207ENST00000514610 SPTLC1O15269 473 aa10.73□□□□□ -0.69
HMGCS1-207ENST00000514610 CFHP08603 1231 aa10.73□□□□□ -0.69
HMGCS1-207ENST00000514610 RSPH4AQ5TD94 716 aa10.73□□□□□ -0.69
HMGCS1-207ENST00000514610 RSBN1LQ6PCB5 846 aaPredicted RBP10.73□□□□□ -0.69
HMGCS1-207ENST00000514610 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.73□□□□□ -0.69
HMGCS1-207ENST00000514610 HLA-CQ95604 372 aa10.72□□□□□ -0.69
HMGCS1-207ENST00000514610 HOXA2O43364 376 aa10.71□□□□□ -0.69
HMGCS1-207ENST00000514610 SLC4A3P48751 1232 aa10.71□□□□□ -0.69
HMGCS1-207ENST00000514610 BCAMP50895 628 aa10.71□□□□□ -0.69
HMGCS1-207ENST00000514610 ANKK1Q8NFD2 765 aa10.71□□□□□ -0.69
HMGCS1-207ENST00000514610 STAC3Q96MF2 364 aa10.71□□□□□ -0.69
HMGCS1-207ENST00000514610 SOWAHBA6NEL2 793 aa10.7□□□□□ -0.7
HMGCS1-207ENST00000514610 GOLGA8CPA6NN73 597 aa10.7□□□□□ -0.7
HMGCS1-207ENST00000514610 USP46P62068 366 aa10.69□□□□□ -0.7
HMGCS1-207ENST00000514610 GUCA2AQ02747 115 aa10.69□□□□□ -0.7
HMGCS1-207ENST00000514610 FUT2Q10981 343 aa10.69□□□□□ -0.7
HMGCS1-207ENST00000514610 WNT2BQ93097 391 aa10.69□□□□□ -0.7
HMGCS1-207ENST00000514610 PCDHB15Q9Y5E8 787 aa10.69□□□□□ -0.7
HMGCS1-207ENST00000514610 TUSC1Q2TAM9 212 aa10.68□□□□□ -0.7
HMGCS1-207ENST00000514610 ATP1B4Q9UN42 357 aaPredicted RBP10.68□□□□□ -0.7
HMGCS1-207ENST00000514610 GJA5P36382 358 aa10.67□□□□□ -0.7
HMGCS1-207ENST00000514610 CSPP1Q1MSJ5 1256 aa10.67□□□□□ -0.7
HMGCS1-207ENST00000514610 C14orf37Q86TY3 774 aa10.67□□□□□ -0.7
HMGCS1-207ENST00000514610 PCDHGC3Q9UN70 934 aa10.67□□□□□ -0.7
HMGCS1-207ENST00000514610 HPS5Q9UPZ3 1129 aa10.67□□□□□ -0.7
HMGCS1-207ENST00000514610 QPCTQ16769 361 aa10.66□□□□□ -0.7
HMGCS1-207ENST00000514610 FDX1P10109 184 aa10.65□□□□□ -0.7
HMGCS1-207ENST00000514610 ACTN4O43707 911 aaKnown RBP10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 LILRB3O75022 631 aa10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 APLP1P51693 650 aa10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 KMT5BQ4FZB7 885 aa10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 PPP2R2DQ66LE6 453 aa10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 CABLES1Q8TDN4 633 aa10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 TSR3Q9UJK0 312 aaKnown RBP10.64□□□□□ -0.71
HMGCS1-207ENST00000514610 RFC5P40937 340 aa10.63□□□□□ -0.71
HMGCS1-207ENST00000514610 PPP4CP60510 307 aa10.63□□□□□ -0.71
HMGCS1-207ENST00000514610 ATP6V1AP38606 617 aa10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 PUS10Q3MIT2 529 aaKnown RBP10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 RTL5Q5HYW3 569 aaPredicted RBP10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 THSD4Q6ZMP0 1018 aa10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 NECTIN2Q92692 538 aa10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 KCTD12Q96CX2 325 aaKnown RBP10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 WBP1LQ9NX94 342 aa10.62□□□□□ -0.71
HMGCS1-207ENST00000514610 HRCP23327 699 aa10.6□□□□□ -0.71
HMGCS1-207ENST00000514610 MORN1Q5T089 497 aa10.6□□□□□ -0.71
HMGCS1-207ENST00000514610 GRIPAP1Q4V328 841 aa10.59□□□□□ -0.71
HMGCS1-207ENST00000514610 PRPF38BQ5VTL8 546 aaKnown RBP10.59□□□□□ -0.71
HMGCS1-207ENST00000514610 ERICH6Q7L0X2 663 aa10.59□□□□□ -0.71
HMGCS1-207ENST00000514610 MCM6Q14566 821 aa10.58□□□□□ -0.72
HMGCS1-207ENST00000514610 ZBTB3Q9H5J0 574 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms