RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 PANK3Q9H999 370 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 NPATQ14207 1427 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 WASHC2CQ9Y4E1 1318 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 KIAA1210Q9ULL0 1709 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 GGT6Q6P531 493 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 NLRP13Q86W25 1043 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 MROH2AA6NES4 1674 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 KIF1BO60333 1816 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 ADGRB3O60242 1522 aa11.09□□□□□ -0.63
CPNE4-211ENST00000514439 TSHZ2Q9NRE2 1034 aa11.09□□□□□ -0.63
CPNE4-211ENST00000514439 ADGRF5Q8IZF2 1346 aa11.09□□□□□ -0.63
CPNE4-211ENST00000514439 ABCC3O15438 1527 aa11.09□□□□□ -0.63
CPNE4-211ENST00000514439 EIF3AQ14152 1382 aaKnown RBP11.09□□□□□ -0.63
CPNE4-211ENST00000514439 SMG6Q86US8 1419 aaKnown RBP11.08□□□□□ -0.64
CPNE4-211ENST00000514439 IFT172Q9UG01 1749 aa11.08□□□□□ -0.64
CPNE4-211ENST00000514439 CC2D1BQ5T0F9 858 aaKnown RBP11.08□□□□□ -0.64
CPNE4-211ENST00000514439 CFAP70Q5T0N1 1121 aa11.08□□□□□ -0.64
CPNE4-211ENST00000514439 DIP2CQ9Y2E4 1556 aa11.08□□□□□ -0.64
CPNE4-211ENST00000514439 NRXN1Q9ULB1 1477 aa11.07□□□□□ -0.64
CPNE4-211ENST00000514439 SENP3-EIF4A1A0A087X0R7 540 aa11.06□□□□□ -0.64
CPNE4-211ENST00000514439 CDCA8Q53HL2 280 aa11.06□□□□□ -0.64
CPNE4-211ENST00000514439 CYB5RLQ6IPT4 315 aa11.06□□□□□ -0.64
CPNE4-211ENST00000514439 NOS1P29475 1434 aa11.06□□□□□ -0.64
CPNE4-211ENST00000514439 RICTORQ6R327 1708 aa11.06□□□□□ -0.64
CPNE4-211ENST00000514439 NUDCQ9Y266 331 aa11.06□□□□□ -0.64
CPNE4-211ENST00000514439 SYNMO15061 1565 aa11.05□□□□□ -0.64
CPNE4-211ENST00000514439 CHGAP10645 457 aaKnown RBP11.05□□□□□ -0.64
CPNE4-211ENST00000514439 ERICH6BQ5W0A0 696 aa11.05□□□□□ -0.64
CPNE4-211ENST00000514439 CAMSAP1Q5T5Y3 1602 aa11.05□□□□□ -0.64
CPNE4-211ENST00000514439 GLI2P10070 1586 aa11.04□□□□□ -0.64
CPNE4-211ENST00000514439 YEATS2Q9ULM3 1422 aa11.04□□□□□ -0.64
CPNE4-211ENST00000514439 MYOM1P52179 1685 aa11.03□□□□□ -0.64
CPNE4-211ENST00000514439 KNSTRNQ9Y448 316 aa11.03□□□□□ -0.64
CPNE4-211ENST00000514439 PIK3C2GO75747 1445 aa11.03□□□□□ -0.64
CPNE4-211ENST00000514439 ERVK-7P63135 1459 aa11.02□□□□□ -0.65
CPNE4-211ENST00000514439 RIMBP3CA6NJZ7 1639 aa11.02□□□□□ -0.65
CPNE4-211ENST00000514439 RIMBP3BA6NNM3 1639 aa11.02□□□□□ -0.65
CPNE4-211ENST00000514439 RIMBP3Q9UFD9 1639 aa11.02□□□□□ -0.65
CPNE4-211ENST00000514439 SIGLEC1Q9BZZ2 1709 aa11.02□□□□□ -0.65
CPNE4-211ENST00000514439 CFAP65Q6ZU64 1925 aaKnown RBP11.02□□□□□ -0.65
CPNE4-211ENST00000514439 SETBP1Q9Y6X0 1596 aa11.01□□□□□ -0.65
CPNE4-211ENST00000514439 PPLO60437 1756 aa11.01□□□□□ -0.65
CPNE4-211ENST00000514439 KDM5AP29375 1690 aaKnown RBP11.01□□□□□ -0.65
CPNE4-211ENST00000514439 AMER1Q5JTC6 1135 aaPredicted RBP11.01□□□□□ -0.65
CPNE4-211ENST00000514439 MYO3AQ8NEV4 1616 aa11.01□□□□□ -0.65
CPNE4-211ENST00000514439 PPP4R2Q9NY27 417 aa11.01□□□□□ -0.65
CPNE4-211ENST00000514439 RPGRIP1LQ68CZ1 1315 aa11□□□□□ -0.65
CPNE4-211ENST00000514439 SLC24A1O60721 1099 aa11□□□□□ -0.65
CPNE4-211ENST00000514439 ARHGAP31Q2M1Z3 1444 aa11□□□□□ -0.65
CPNE4-211ENST00000514439 ASXL1Q8IXJ9 1541 aa11□□□□□ -0.65
CPNE4-211ENST00000514439 INSRP06213 1382 aa11□□□□□ -0.65
CPNE4-211ENST00000514439 PIK3C2BO00750 1634 aa11□□□□□ -0.65
CPNE4-211ENST00000514439 ZC3H13Q5T200 1668 aaKnown RBP11□□□□□ -0.65
CPNE4-211ENST00000514439 ZMYM4Q5VZL5 1548 aa10.99□□□□□ -0.65
CPNE4-211ENST00000514439 SBNO2Q9Y2G9 1366 aa10.99□□□□□ -0.65
CPNE4-211ENST00000514439 RNF123Q5XPI4 1314 aa10.99□□□□□ -0.65
CPNE4-211ENST00000514439 DIP2BQ9P265 1576 aa10.99□□□□□ -0.65
CPNE4-211ENST00000514439 BLMP54132 1417 aaPredicted RBP10.99□□□□□ -0.65
CPNE4-211ENST00000514439 FAM69CQ0P6D2 419 aa10.99□□□□□ -0.65
CPNE4-211ENST00000514439 C14orf93Q9H972 538 aaKnown RBP10.99□□□□□ -0.65
CPNE4-211ENST00000514439 ADGRB1O14514 1584 aa10.99□□□□□ -0.65
CPNE4-211ENST00000514439 CENPJQ9HC77 1338 aaPredicted RBP10.98□□□□□ -0.65
CPNE4-211ENST00000514439 PPP2R1AP30153 589 aa10.98□□□□□ -0.65
CPNE4-211ENST00000514439 NPC1L1Q9UHC9 1359 aa10.98□□□□□ -0.65
CPNE4-211ENST00000514439 SALL2Q9Y467 1007 aaPredicted RBP10.97□□□□□ -0.65
CPNE4-211ENST00000514439 TRAK1Q9UPV9 953 aa10.97□□□□□ -0.65
CPNE4-211ENST00000514439 NEXMIFQ5QGS0 1516 aa10.97□□□□□ -0.65
CPNE4-211ENST00000514439 TMEM132EQ6IEE7 984 aa10.96□□□□□ -0.66
CPNE4-211ENST00000514439 PDE3BQ13370 1112 aa10.95□□□□□ -0.66
CPNE4-211ENST00000514439 IDI1Q13907 227 aa10.95□□□□□ -0.66
CPNE4-211ENST00000514439 NUTM2DQ5VT03 806 aaPredicted RBP10.95□□□□□ -0.66
CPNE4-211ENST00000514439 VGFO15240 615 aaPredicted RBP10.95□□□□□ -0.66
CPNE4-211ENST00000514439 B4GALNT3Q6L9W6 998 aa10.95□□□□□ -0.66
CPNE4-211ENST00000514439 SLC52A1Q9NWF4 448 aa10.94□□□□□ -0.66
CPNE4-211ENST00000514439 QRICH2Q9H0J4 1663 aa10.94□□□□□ -0.66
CPNE4-211ENST00000514439 CARD14Q9BXL6 1004 aa10.93□□□□□ -0.66
CPNE4-211ENST00000514439 ADAMTS8Q9UP79 889 aa10.93□□□□□ -0.66
CPNE4-211ENST00000514439 PREX1Q8TCU6 1659 aa10.93□□□□□ -0.66
CPNE4-211ENST00000514439 TSPOAP1O95153 1857 aa10.92□□□□□ -0.66
CPNE4-211ENST00000514439 WDR43Q15061 677 aaKnown RBP eCLIP10.92□□□□□ -0.66
CPNE4-211ENST00000514439 CDCA7LQ96GN5 454 aa10.92□□□□□ -0.66
CPNE4-211ENST00000514439 ZFYVE9O95405 1425 aa10.92□□□□□ -0.66
CPNE4-211ENST00000514439 RBM19Q9Y4C8 960 aaKnown RBP10.91□□□□□ -0.66
CPNE4-211ENST00000514439 REREQ9P2R6 1566 aa10.91□□□□□ -0.66
CPNE4-211ENST00000514439 RCAN3Q9UKA8 241 aa10.91□□□□□ -0.66
CPNE4-211ENST00000514439 TMEM131LA2VDJ0 1609 aa10.9□□□□□ -0.66
CPNE4-211ENST00000514439 RRP1P56182 461 aaKnown RBP10.9□□□□□ -0.66
CPNE4-211ENST00000514439 ARHGEF28Q8N1W1 1705 aaKnown RBP10.9□□□□□ -0.66
CPNE4-211ENST00000514439 FBXO31Q5XUX0 539 aaPredicted RBP10.9□□□□□ -0.67
CPNE4-211ENST00000514439 AGLP35573 1532 aa10.89□□□□□ -0.67
CPNE4-211ENST00000514439 NSD3Q9BZ95 1437 aa10.89□□□□□ -0.67
CPNE4-211ENST00000514439 SLC12A5Q9H2X9 1139 aa10.89□□□□□ -0.67
CPNE4-211ENST00000514439 TULP4Q9NRJ4 1543 aa10.88□□□□□ -0.67
CPNE4-211ENST00000514439 MYO5BQ9ULV0 1848 aa10.88□□□□□ -0.67
CPNE4-211ENST00000514439 PLEKHH1Q9ULM0 1364 aa10.88□□□□□ -0.67
CPNE4-211ENST00000514439 EVC2Q86UK5 1308 aa10.87□□□□□ -0.67
CPNE4-211ENST00000514439 CCDC136Q96JN2 1154 aa10.86□□□□□ -0.67
CPNE4-211ENST00000514439 PUS7Q96PZ0 661 aaKnown RBP10.86□□□□□ -0.67
CPNE4-211ENST00000514439 ZNF521Q96K83 1311 aa10.85□□□□□ -0.67
CPNE4-211ENST00000514439 USP32Q8NFA0 1604 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms