RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 SLIT1O75093 1534 aa12.19□□□□□ -0.46
CCL28-204ENST00000514421 MED14O60244 1454 aa12.19□□□□□ -0.46
CCL28-204ENST00000514421 RPGRIP1LQ68CZ1 1315 aa12.18□□□□□ -0.46
CCL28-204ENST00000514421 SCAF11Q99590 1463 aaKnown RBP12.18□□□□□ -0.46
CCL28-204ENST00000514421 RIMS2Q9UQ26 1411 aa12.18□□□□□ -0.46
CCL28-204ENST00000514421 PIK3C2BO00750 1634 aa12.18□□□□□ -0.46
CCL28-204ENST00000514421 ZNF335Q9H4Z2 1342 aaPredicted RBP12.17□□□□□ -0.46
CCL28-204ENST00000514421 UBR1Q8IWV7 1749 aa12.17□□□□□ -0.46
CCL28-204ENST00000514421 VGFO15240 615 aaPredicted RBP12.16□□□□□ -0.46
CCL28-204ENST00000514421 SLC26A8Q96RN1 970 aa12.16□□□□□ -0.46
CCL28-204ENST00000514421 TBX22Q9Y458 520 aa12.16□□□□□ -0.46
CCL28-204ENST00000514421 ADGRB3O60242 1522 aa12.16□□□□□ -0.46
CCL28-204ENST00000514421 CCDC144AA2RUR9 1427 aa12.15□□□□□ -0.46
CCL28-204ENST00000514421 RGL3Q3MIN7 710 aa12.15□□□□□ -0.46
CCL28-204ENST00000514421 ZFYVE9O95405 1425 aa12.14□□□□□ -0.47
CCL28-204ENST00000514421 KCNA6P17658 529 aa12.14□□□□□ -0.47
CCL28-204ENST00000514421 ANKRD30BQ9BXX2 1392 aa12.14□□□□□ -0.47
CCL28-204ENST00000514421 PLEKHG1Q9ULL1 1385 aa12.14□□□□□ -0.47
CCL28-204ENST00000514421 KDM5AP29375 1690 aaKnown RBP12.13□□□□□ -0.47
CCL28-204ENST00000514421 TRPM2O94759 1503 aa12.13□□□□□ -0.47
CCL28-204ENST00000514421 TMEM131LA2VDJ0 1609 aa12.13□□□□□ -0.47
CCL28-204ENST00000514421 NEURL4Q96JN8 1562 aa12.12□□□□□ -0.47
CCL28-204ENST00000514421 FBXO41Q8TF61 875 aa12.1□□□□□ -0.47
CCL28-204ENST00000514421 SPHKAPQ2M3C7 1700 aa12.1□□□□□ -0.47
CCL28-204ENST00000514421 CLTCL1P53675 1640 aa12.08□□□□□ -0.48
CCL28-204ENST00000514421 LTBP4Q8N2S1 1624 aa12.08□□□□□ -0.48
CCL28-204ENST00000514421 PROSER2Q86WR7 435 aaPredicted RBP12.08□□□□□ -0.48
CCL28-204ENST00000514421 SPATA31E1Q6ZUB1 1445 aa12.08□□□□□ -0.48
CCL28-204ENST00000514421 CLSPNQ9HAW4 1339 aa12.08□□□□□ -0.48
CCL28-204ENST00000514421 CCER1Q8TC90 406 aaPredicted RBP12.07□□□□□ -0.48
CCL28-204ENST00000514421 STAC3Q96MF2 364 aa12.07□□□□□ -0.48
CCL28-204ENST00000514421 AMOTL2Q9Y2J4 779 aa12.07□□□□□ -0.48
CCL28-204ENST00000514421 POLR1AO95602 1720 aaPredicted RBP12.06□□□□□ -0.48
CCL28-204ENST00000514421 ADAMTS13Q76LX8 1427 aa12.06□□□□□ -0.48
CCL28-204ENST00000514421 ILDR1Q86SU0 546 aaPredicted RBP12.06□□□□□ -0.48
CCL28-204ENST00000514421 IQGAP1P46940 1657 aa12.06□□□□□ -0.48
CCL28-204ENST00000514421 ADGRF5Q8IZF2 1346 aa12.06□□□□□ -0.48
CCL28-204ENST00000514421 PIK3R4Q99570 1358 aa12.05□□□□□ -0.48
CCL28-204ENST00000514421 DCAF11Q8TEB1 546 aa12.05□□□□□ -0.48
CCL28-204ENST00000514421 TOM1O60784 492 aa12.04□□□□□ -0.48
CCL28-204ENST00000514421 KDM2AQ9Y2K7 1162 aa12.04□□□□□ -0.48
CCL28-204ENST00000514421 CPS1P31327 1500 aa12.04□□□□□ -0.48
CCL28-204ENST00000514421 MYO5BQ9ULV0 1848 aa12.04□□□□□ -0.48
CCL28-204ENST00000514421 KIF1BO60333 1816 aa12.03□□□□□ -0.48
CCL28-204ENST00000514421 UBAP1LF5GYI3 381 aa12.03□□□□□ -0.48
CCL28-204ENST00000514421 SIN3AQ96ST3 1273 aa12.03□□□□□ -0.48
CCL28-204ENST00000514421 DHX57Q6P158 1386 aaKnown RBP12.03□□□□□ -0.48
CCL28-204ENST00000514421 IQSEC2Q5JU85 1478 aa12.02□□□□□ -0.48
CCL28-204ENST00000514421 NEXMIFQ5QGS0 1516 aa12.02□□□□□ -0.48
CCL28-204ENST00000514421 C14orf93Q9H972 538 aaKnown RBP12.02□□□□□ -0.49
CCL28-204ENST00000514421 METP08581 1390 aa12.02□□□□□ -0.49
CCL28-204ENST00000514421 NEUROD1Q13562 356 aa12.01□□□□□ -0.49
CCL28-204ENST00000514421 RBM33Q96EV2 1170 aaKnown RBP12.01□□□□□ -0.49
CCL28-204ENST00000514421 TMEM94Q12767 1356 aa12.01□□□□□ -0.49
CCL28-204ENST00000514421 LRRC7Q96NW7 1537 aa12.01□□□□□ -0.49
CCL28-204ENST00000514421 CFAP70Q5T0N1 1121 aa11.99□□□□□ -0.49
CCL28-204ENST00000514421 SETBP1Q9Y6X0 1596 aa11.98□□□□□ -0.49
CCL28-204ENST00000514421 PTPRUQ92729 1446 aa11.98□□□□□ -0.49
CCL28-204ENST00000514421 TMEM132EQ6IEE7 984 aa11.98□□□□□ -0.49
CCL28-204ENST00000514421 C14orf37Q86TY3 774 aa11.98□□□□□ -0.49
CCL28-204ENST00000514421 C19orf44Q9H6X5 657 aa11.98□□□□□ -0.49
CCL28-204ENST00000514421 NCOA3Q9Y6Q9 1424 aa11.97□□□□□ -0.49
CCL28-204ENST00000514421 L3MBTL2Q969R5 705 aa11.97□□□□□ -0.49
CCL28-204ENST00000514421 STK26Q9P289 416 aa11.97□□□□□ -0.49
CCL28-204ENST00000514421 DIP2AQ14689 1571 aa11.96□□□□□ -0.49
CCL28-204ENST00000514421 PIP4K2BP78356 416 aa11.96□□□□□ -0.49
CCL28-204ENST00000514421 SIRT1Q96EB6 747 aa11.96□□□□□ -0.49
CCL28-204ENST00000514421 NKTRP30414 1462 aaKnown RBP11.95□□□□□ -0.5
CCL28-204ENST00000514421 PIK3C2GO75747 1445 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 MSH6P52701 1360 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 ABCC11Q96J66 1382 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 ALKQ9UM73 1620 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 ATF3P18847 181 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 CADPS2Q86UW7 1296 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 SLAIN2Q9P270 581 aa11.94□□□□□ -0.5
CCL28-204ENST00000514421 LRPPRCP42704 1394 aaKnown RBP11.93□□□□□ -0.5
CCL28-204ENST00000514421 STRCP1A6NGW2 1772 aa11.93□□□□□ -0.5
CCL28-204ENST00000514421 MYOM2P54296 1465 aa11.93□□□□□ -0.5
CCL28-204ENST00000514421 NRXN1Q9ULB1 1477 aa11.93□□□□□ -0.5
CCL28-204ENST00000514421 NRXN3Q9Y4C0 1643 aa11.93□□□□□ -0.5
CCL28-204ENST00000514421 CHD2O14647 1828 aaKnown RBP11.93□□□□□ -0.5
CCL28-204ENST00000514421 PPLO60437 1756 aa11.92□□□□□ -0.5
CCL28-204ENST00000514421 WAPLQ7Z5K2 1190 aa11.92□□□□□ -0.5
CCL28-204ENST00000514421 NWD1Q149M9 1564 aa11.92□□□□□ -0.5
CCL28-204ENST00000514421 ROBO2Q9HCK4 1378 aa11.92□□□□□ -0.5
CCL28-204ENST00000514421 RNF39Q9H2S5 420 aa11.91□□□□□ -0.5
CCL28-204ENST00000514421 DCAF8L1A6NGE4 600 aa11.9□□□□□ -0.5
CCL28-204ENST00000514421 YTHDC2Q9H6S0 1430 aaKnown RBP11.9□□□□□ -0.5
CCL28-204ENST00000514421 TRAK1Q9UPV9 953 aa11.9□□□□□ -0.5
CCL28-204ENST00000514421 NBPF1Q3BBV0 1214 aa11.89□□□□□ -0.51
CCL28-204ENST00000514421 POGKQ9P215 609 aa11.89□□□□□ -0.51
CCL28-204ENST00000514421 PTCH1Q13635 1447 aa11.88□□□□□ -0.51
CCL28-204ENST00000514421 FAM135BQ49AJ0 1406 aa11.88□□□□□ -0.51
CCL28-204ENST00000514421 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
CCL28-204ENST00000514421 PRAG1Q86YV5 1406 aa11.87□□□□□ -0.51
CCL28-204ENST00000514421 HSPA1LP34931 641 aa11.87□□□□□ -0.51
CCL28-204ENST00000514421 PRAM1Q96QH2 718 aa11.87□□□□□ -0.51
CCL28-204ENST00000514421 TONSLQ96HA7 1378 aa11.87□□□□□ -0.51
CCL28-204ENST00000514421 TECPR2O15040 1411 aa11.86□□□□□ -0.51
CCL28-204ENST00000514421 IFT172Q9UG01 1749 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms