RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 USP47Q96K76 1375 aa12.65□□□□□ -0.38
PDLIM3-209ENST00000514142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.65□□□□□ -0.38
PDLIM3-209ENST00000514142 CAVIN1Q6NZI2 390 aaKnown RBP12.65□□□□□ -0.38
PDLIM3-209ENST00000514142 MNS1Q8NEH6 495 aa12.65□□□□□ -0.38
PDLIM3-209ENST00000514142 ARGLU1Q9NWB6 273 aaPredicted RBP12.64□□□□□ -0.39
PDLIM3-209ENST00000514142 PANK1Q8TE04 598 aa12.64□□□□□ -0.39
PDLIM3-209ENST00000514142 NUTM2DQ5VT03 806 aaPredicted RBP12.64□□□□□ -0.39
PDLIM3-209ENST00000514142 CEP89Q96ST8 783 aa12.64□□□□□ -0.39
PDLIM3-209ENST00000514142 SASS6Q6UVJ0 657 aa12.63□□□□□ -0.39
PDLIM3-209ENST00000514142 HDGFP51858 240 aaKnown RBP12.63□□□□□ -0.39
PDLIM3-209ENST00000514142 TRAK1Q9UPV9 953 aa12.63□□□□□ -0.39
PDLIM3-209ENST00000514142 PODXL2Q9NZ53 605 aa12.63□□□□□ -0.39
PDLIM3-209ENST00000514142 ZKSCAN1P17029 563 aaPredicted RBP12.62□□□□□ -0.39
PDLIM3-209ENST00000514142 NOM1Q5C9Z4 860 aaKnown RBP12.62□□□□□ -0.39
PDLIM3-209ENST00000514142 SMC3Q9UQE7 1217 aa12.62□□□□□ -0.39
PDLIM3-209ENST00000514142 INTS3Q68E01 1043 aaKnown RBP12.61□□□□□ -0.39
PDLIM3-209ENST00000514142 CCDC66A2RUB6 948 aa12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 IPO7O95373 1038 aaKnown RBP12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 HNRNPMP52272 730 aaKnown RBP eCLIP12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 WIZO95785 1651 aa12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 CSB-PGBD3P0DP91 1061 aa12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 CCDC173Q0VFZ6 552 aa12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 CDCA7LQ96GN5 454 aa12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 HSP90B2PQ58FF3 399 aa12.6□□□□□ -0.39
PDLIM3-209ENST00000514142 RUFY2Q8WXA3 655 aa12.59□□□□□ -0.39
PDLIM3-209ENST00000514142 LTV1Q96GA3 475 aaPredicted RBP12.59□□□□□ -0.39
PDLIM3-209ENST00000514142 KIF7Q2M1P5 1343 aa12.59□□□□□ -0.39
PDLIM3-209ENST00000514142 BACH2Q9BYV9 841 aa12.59□□□□□ -0.39
PDLIM3-209ENST00000514142 PRPF40AO75400 957 aaKnown RBP12.59□□□□□ -0.39
PDLIM3-209ENST00000514142 MPNDQ8N594 471 aa12.59□□□□□ -0.39
PDLIM3-209ENST00000514142 CCDC7Q96M83 1385 aa12.58□□□□□ -0.39
PDLIM3-209ENST00000514142 PCMTD1Q96MG8 357 aaPredicted RBP12.58□□□□□ -0.4
PDLIM3-209ENST00000514142 MARCH6O60337 910 aa12.58□□□□□ -0.4
PDLIM3-209ENST00000514142 FOSBP53539 338 aa12.58□□□□□ -0.4
PDLIM3-209ENST00000514142 HMGN5P82970 282 aaKnown RBP12.58□□□□□ -0.4
PDLIM3-209ENST00000514142 CHMP4CQ96CF2 233 aa12.58□□□□□ -0.4
PDLIM3-209ENST00000514142 KIF3BO15066 747 aa12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 MSH5O43196 834 aa12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 RRP9O43818 475 aaKnown RBP12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 AMPHP49418 695 aa12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 CALRP27797 417 aaKnown RBP12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 FHOD3Q2V2M9 1422 aa12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 TRIM5Q9C035 493 aa12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 GRPEL1Q9HAV7 217 aa12.57□□□□□ -0.4
PDLIM3-209ENST00000514142 CCDC73Q6ZRK6 1079 aa12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 RIPK4P57078 832 aa12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 AKAP17AQ02040 695 aaKnown RBP12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 RUFY1Q96T51 708 aa12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 ACBD3Q9H3P7 528 aa12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 CPLX1O14810 134 aa12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 API5Q9BZZ5 524 aaKnown RBP12.56□□□□□ -0.4
PDLIM3-209ENST00000514142 ESPNB1AK53 854 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 CDC45O75419 566 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 APPP05067 770 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 TSPY26PQ9H489 355 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 CWC15Q9P013 229 aaKnown RBP12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 NUTM2FA1L443 756 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 CPLX2Q6PUV4 134 aaKnown RBP12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 CNTLNQ9NXG0 1405 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 UQCRHLA0A096LP55 91 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 UQCRHP07919 91 aa12.55□□□□□ -0.4
PDLIM3-209ENST00000514142 WASHC2AQ641Q2 1341 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 RAPGEF2Q9Y4G8 1499 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 MBD3O95983 291 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 CCDC27Q2M243 656 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 ANKRD20A12PQ8NF67 263 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 H0YHG0 523 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 AK7Q96M32 723 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 AKNAQ7Z591 1439 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 TRIM29Q14134 588 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 NGEFQ8N5V2 710 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 SPC24Q8NBT2 197 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 NECTIN2Q92692 538 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 CCDC18Q5T9S5 1454 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 CCDC144AA2RUR9 1427 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 IFIT2P09913 472 aaKnown RBP12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 PDZRN3Q9UPQ7 1066 aa12.54□□□□□ -0.4
PDLIM3-209ENST00000514142 VPS53Q5VIR6 699 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 RNF20Q5VTR2 975 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 SYNE3Q6ZMZ3 975 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 TDRD9Q8NDG6 1382 aaKnown RBP12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 EFCAB2Q5VUJ9 269 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 PDILTQ8N807 584 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 RUNDC1Q96C34 613 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 ADAMTS8Q9UP79 889 aa12.53□□□□□ -0.4
PDLIM3-209ENST00000514142 PRM3Q9NNZ6 103 aa12.52□□□□□ -0.4
PDLIM3-209ENST00000514142 NGDNQ8NEJ9 315 aaKnown RBP12.52□□□□□ -0.41
PDLIM3-209ENST00000514142 SDF4Q9BRK5 362 aa12.52□□□□□ -0.41
PDLIM3-209ENST00000514142 EIF2S2P20042 333 aaKnown RBP12.52□□□□□ -0.41
PDLIM3-209ENST00000514142 MAPK8IP2Q13387 824 aaPredicted RBP12.52□□□□□ -0.41
PDLIM3-209ENST00000514142 WWC1Q8IX03 1113 aa12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 C9orf78Q9NZ63 289 aaPredicted RBP12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 NEK4P51957 841 aa12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 HOOK1Q9UJC3 728 aaKnown RBP12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 AAMPQ13685 434 aa12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 SKIDA1Q1XH10 827 aa12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 TTLL5Q6EMB2 1281 aa12.51□□□□□ -0.41
PDLIM3-209ENST00000514142 DIAPH1O60610 1272 aaKnown RBP12.5□□□□□ -0.41
PDLIM3-209ENST00000514142 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.5□□□□□ -0.41
PDLIM3-209ENST00000514142 NAT10Q9H0A0 1025 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms