RNA–Protein interactions for RNA: ENST00000513957.1

NEDD4-210, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-210ENST00000513957 FKBP8Q14318 412 aa12.24□□□□□ -0.45
NEDD4-210ENST00000513957 SCAF11Q99590 1463 aaKnown RBP12.21□□□□□ -0.45
NEDD4-210ENST00000513957 HRCP23327 699 aa12.21□□□□□ -0.45
NEDD4-210ENST00000513957 ANKLE2Q86XL3 938 aa12.21□□□□□ -0.45
NEDD4-210ENST00000513957 TMEM2Q9UHN6 1383 aa12.2□□□□□ -0.46
NEDD4-210ENST00000513957 CLTCL1P53675 1640 aa12.19□□□□□ -0.46
NEDD4-210ENST00000513957 IDI1Q13907 227 aa12.19□□□□□ -0.46
NEDD4-210ENST00000513957 TRIM52Q96A61 297 aa12.19□□□□□ -0.46
NEDD4-210ENST00000513957 STAG3Q9UJ98 1225 aa12.19□□□□□ -0.46
NEDD4-210ENST00000513957 RAB3GAP2Q9H2M9 1393 aa12.18□□□□□ -0.46
NEDD4-210ENST00000513957 NPHP4O75161 1426 aaPredicted RBP12.18□□□□□ -0.46
NEDD4-210ENST00000513957 IQSEC2Q5JU85 1478 aa12.17□□□□□ -0.46
NEDD4-210ENST00000513957 EID1Q9Y6B2 187 aa12.17□□□□□ -0.46
NEDD4-210ENST00000513957 ZFYVE9O95405 1425 aa12.17□□□□□ -0.46
NEDD4-210ENST00000513957 NCKAP5LQ9HCH0 1330 aa12.16□□□□□ -0.46
NEDD4-210ENST00000513957 HDGFP51858 240 aaKnown RBP12.16□□□□□ -0.46
NEDD4-210ENST00000513957 LTBP4Q8N2S1 1624 aa12.15□□□□□ -0.46
NEDD4-210ENST00000513957 DIP2AQ14689 1571 aa12.15□□□□□ -0.46
NEDD4-210ENST00000513957 CPS1P31327 1500 aa12.15□□□□□ -0.46
NEDD4-210ENST00000513957 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.13□□□□□ -0.47
NEDD4-210ENST00000513957 MPHOSPH9Q99550 1183 aa12.13□□□□□ -0.47
NEDD4-210ENST00000513957 PPLO60437 1756 aa12.13□□□□□ -0.47
NEDD4-210ENST00000513957 CCDC144AA2RUR9 1427 aa12.12□□□□□ -0.47
NEDD4-210ENST00000513957 RIMS2Q9UQ26 1411 aa12.12□□□□□ -0.47
NEDD4-210ENST00000513957 TXNDC2Q86VQ3 553 aa12.12□□□□□ -0.47
NEDD4-210ENST00000513957 PLEKHG1Q9ULL1 1385 aa12.12□□□□□ -0.47
NEDD4-210ENST00000513957 NEXMIFQ5QGS0 1516 aa12.11□□□□□ -0.47
NEDD4-210ENST00000513957 IFT172Q9UG01 1749 aa12.11□□□□□ -0.47
NEDD4-210ENST00000513957 NWD1Q149M9 1564 aa12.1□□□□□ -0.47
NEDD4-210ENST00000513957 SETBP1Q9Y6X0 1596 aa12.1□□□□□ -0.47
NEDD4-210ENST00000513957 LTKP29376 864 aa12.1□□□□□ -0.47
NEDD4-210ENST00000513957 CHD2O14647 1828 aaKnown RBP12.09□□□□□ -0.47
NEDD4-210ENST00000513957 RNF39Q9H2S5 420 aa12.09□□□□□ -0.47
NEDD4-210ENST00000513957 STRCP1A6NGW2 1772 aa12.08□□□□□ -0.48
NEDD4-210ENST00000513957 RPGRIP1LQ68CZ1 1315 aa12.08□□□□□ -0.48
NEDD4-210ENST00000513957 NKTRP30414 1462 aaKnown RBP12.08□□□□□ -0.48
NEDD4-210ENST00000513957 NRXN3Q9Y4C0 1643 aa12.08□□□□□ -0.48
NEDD4-210ENST00000513957 PPP1R15AO75807 674 aaPredicted RBP12.07□□□□□ -0.48
NEDD4-210ENST00000513957 CHGAP10645 457 aaKnown RBP12.07□□□□□ -0.48
NEDD4-210ENST00000513957 PIK3R4Q99570 1358 aa12.06□□□□□ -0.48
NEDD4-210ENST00000513957 SPATA31E1Q6ZUB1 1445 aa12.06□□□□□ -0.48
NEDD4-210ENST00000513957 TRIM26Q12899 539 aaPredicted RBP12.06□□□□□ -0.48
NEDD4-210ENST00000513957 CERKQ8TCT0 537 aa12.06□□□□□ -0.48
NEDD4-210ENST00000513957 ZNF335Q9H4Z2 1342 aaPredicted RBP12.06□□□□□ -0.48
NEDD4-210ENST00000513957 ATXN8OSP0DMR3 200 aa12.05□□□□□ -0.48
NEDD4-210ENST00000513957 SETD1AO15047 1707 aaKnown RBP12.05□□□□□ -0.48
NEDD4-210ENST00000513957 ZNF326Q5BKZ1 582 aaKnown RBP12.04□□□□□ -0.48
NEDD4-210ENST00000513957 XIRP1Q702N8 1843 aaKnown RBP12.04□□□□□ -0.48
NEDD4-210ENST00000513957 LAMC1P11047 1609 aa12.04□□□□□ -0.48
NEDD4-210ENST00000513957 ANKRD30BQ9BXX2 1392 aa12.04□□□□□ -0.48
NEDD4-210ENST00000513957 ADAMTS13Q76LX8 1427 aa12.03□□□□□ -0.48
NEDD4-210ENST00000513957 TBX22Q9Y458 520 aa12.03□□□□□ -0.48
NEDD4-210ENST00000513957 VGFO15240 615 aaPredicted RBP12.02□□□□□ -0.49
NEDD4-210ENST00000513957 FBXO41Q8TF61 875 aa12.02□□□□□ -0.49
NEDD4-210ENST00000513957 XRN1Q8IZH2 1706 aaKnown RBP12.02□□□□□ -0.49
NEDD4-210ENST00000513957 MYOM2P54296 1465 aa12.02□□□□□ -0.49
NEDD4-210ENST00000513957 LRRC7Q96NW7 1537 aa12.01□□□□□ -0.49
NEDD4-210ENST00000513957 KCNA6P17658 529 aa12□□□□□ -0.49
NEDD4-210ENST00000513957 PRAG1Q86YV5 1406 aa12□□□□□ -0.49
NEDD4-210ENST00000513957 NCOA3Q9Y6Q9 1424 aa12□□□□□ -0.49
NEDD4-210ENST00000513957 PLCB2Q00722 1185 aa11.99□□□□□ -0.49
NEDD4-210ENST00000513957 BCANQ96GW7 911 aa11.99□□□□□ -0.49
NEDD4-210ENST00000513957 STAC3Q96MF2 364 aa11.99□□□□□ -0.49
NEDD4-210ENST00000513957 KNDC1Q76NI1 1749 aa11.98□□□□□ -0.49
NEDD4-210ENST00000513957 ALKQ9UM73 1620 aa11.98□□□□□ -0.49
NEDD4-210ENST00000513957 NRXN1Q9ULB1 1477 aa11.98□□□□□ -0.49
NEDD4-210ENST00000513957 SLC26A8Q96RN1 970 aa11.98□□□□□ -0.49
NEDD4-210ENST00000513957 PIK3C2GO75747 1445 aa11.97□□□□□ -0.49
NEDD4-210ENST00000513957 PTCH1Q13635 1447 aa11.95□□□□□ -0.5
NEDD4-210ENST00000513957 KIAA1210Q9ULL0 1709 aa11.94□□□□□ -0.5
NEDD4-210ENST00000513957 NUTM2DQ5VT03 806 aaPredicted RBP11.94□□□□□ -0.5
NEDD4-210ENST00000513957 DCCP43146 1447 aa11.93□□□□□ -0.5
NEDD4-210ENST00000513957 TMEM94Q12767 1356 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 DHX57Q6P158 1386 aaKnown RBP11.92□□□□□ -0.5
NEDD4-210ENST00000513957 DCAF8L1A6NGE4 600 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 TOM1O60784 492 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 RGL3Q3MIN7 710 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 RNF216Q9NWF9 866 aaPredicted RBP11.92□□□□□ -0.5
NEDD4-210ENST00000513957 TECPR2O15040 1411 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 PTPRUQ92729 1446 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 METP08581 1390 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 MSH6P52701 1360 aa11.92□□□□□ -0.5
NEDD4-210ENST00000513957 POTEHQ6S545 545 aa11.91□□□□□ -0.5
NEDD4-210ENST00000513957 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.91□□□□□ -0.5
NEDD4-210ENST00000513957 ILDR1Q86SU0 546 aaPredicted RBP11.9□□□□□ -0.5
NEDD4-210ENST00000513957 PROSER2Q86WR7 435 aaPredicted RBP11.9□□□□□ -0.5
NEDD4-210ENST00000513957 NALCNQ8IZF0 1738 aa11.9□□□□□ -0.5
NEDD4-210ENST00000513957 ASXL1Q8IXJ9 1541 aa11.9□□□□□ -0.5
NEDD4-210ENST00000513957 ADGRF5Q8IZF2 1346 aa11.89□□□□□ -0.51
NEDD4-210ENST00000513957 UBAP1LF5GYI3 381 aa11.89□□□□□ -0.51
NEDD4-210ENST00000513957 AMOTL2Q9Y2J4 779 aa11.89□□□□□ -0.51
NEDD4-210ENST00000513957 ADGRL3Q9HAR2 1447 aa11.87□□□□□ -0.51
NEDD4-210ENST00000513957 DLC1Q96QB1 1528 aa11.87□□□□□ -0.51
NEDD4-210ENST00000513957 C1QBPQ07021 282 aaKnown RBP11.87□□□□□ -0.51
NEDD4-210ENST00000513957 C14orf93Q9H972 538 aaKnown RBP11.87□□□□□ -0.51
NEDD4-210ENST00000513957 LRPPRCP42704 1394 aaKnown RBP11.87□□□□□ -0.51
NEDD4-210ENST00000513957 ADGRB1O14514 1584 aa11.87□□□□□ -0.51
NEDD4-210ENST00000513957 ABCC11Q96J66 1382 aa11.86□□□□□ -0.51
NEDD4-210ENST00000513957 CDC42BPGQ6DT37 1551 aa11.86□□□□□ -0.51
NEDD4-210ENST00000513957 FAM135BQ49AJ0 1406 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms