RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 NCKAP5LQ9HCH0 1330 aa14.4□□□□□ -0.1
TOPBP1-209ENST00000513818 SLIT1O75093 1534 aa14.39□□□□□ -0.11
TOPBP1-209ENST00000513818 ARHGAP23Q9P227 1491 aa14.38□□□□□ -0.11
TOPBP1-209ENST00000513818 NUTM2DQ5VT03 806 aaPredicted RBP14.38□□□□□ -0.11
TOPBP1-209ENST00000513818 CNKSR2Q8WXI2 1034 aa14.38□□□□□ -0.11
TOPBP1-209ENST00000513818 TMEM2Q9UHN6 1383 aa14.37□□□□□ -0.11
TOPBP1-209ENST00000513818 THEMISQ8N1K5 641 aaPredicted RBP14.37□□□□□ -0.11
TOPBP1-209ENST00000513818 RIMS2Q9UQ26 1411 aa14.37□□□□□ -0.11
TOPBP1-209ENST00000513818 SCAF11Q99590 1463 aaKnown RBP14.37□□□□□ -0.11
TOPBP1-209ENST00000513818 NEXMIFQ5QGS0 1516 aa14.36□□□□□ -0.11
TOPBP1-209ENST00000513818 ZFYVE9O95405 1425 aa14.36□□□□□ -0.11
TOPBP1-209ENST00000513818 SPATA31E1Q6ZUB1 1445 aa14.36□□□□□ -0.11
TOPBP1-209ENST00000513818 ZNF326Q5BKZ1 582 aaKnown RBP14.36□□□□□ -0.11
TOPBP1-209ENST00000513818 IFT172Q9UG01 1749 aa14.35□□□□□ -0.11
TOPBP1-209ENST00000513818 PPLO60437 1756 aa14.34□□□□□ -0.11
TOPBP1-209ENST00000513818 IQGAP1P46940 1657 aa14.34□□□□□ -0.11
TOPBP1-209ENST00000513818 LTKP29376 864 aa14.34□□□□□ -0.11
TOPBP1-209ENST00000513818 RGL3Q3MIN7 710 aa14.34□□□□□ -0.11
TOPBP1-209ENST00000513818 SIN3AQ96ST3 1273 aa14.34□□□□□ -0.11
TOPBP1-209ENST00000513818 NPHP4O75161 1426 aaPredicted RBP14.32□□□□□ -0.12
TOPBP1-209ENST00000513818 TXNDC2Q86VQ3 553 aa14.32□□□□□ -0.12
TOPBP1-209ENST00000513818 ANKLE2Q86XL3 938 aa14.32□□□□□ -0.12
TOPBP1-209ENST00000513818 PPP1R15AO75807 674 aaPredicted RBP14.3□□□□□ -0.12
TOPBP1-209ENST00000513818 NEUROD1Q13562 356 aa14.3□□□□□ -0.12
TOPBP1-209ENST00000513818 NRXN3Q9Y4C0 1643 aa14.3□□□□□ -0.12
TOPBP1-209ENST00000513818 EID1Q9Y6B2 187 aa14.29□□□□□ -0.12
TOPBP1-209ENST00000513818 MED14O60244 1454 aa14.29□□□□□ -0.12
TOPBP1-209ENST00000513818 PLEKHG1Q9ULL1 1385 aa14.27□□□□□ -0.12
TOPBP1-209ENST00000513818 AMER1Q5JTC6 1135 aaPredicted RBP14.27□□□□□ -0.13
TOPBP1-209ENST00000513818 CCER1Q8TC90 406 aaPredicted RBP14.26□□□□□ -0.13
TOPBP1-209ENST00000513818 BCANQ96GW7 911 aa14.26□□□□□ -0.13
TOPBP1-209ENST00000513818 ADGRF5Q8IZF2 1346 aa14.25□□□□□ -0.13
TOPBP1-209ENST00000513818 SLC26A8Q96RN1 970 aa14.25□□□□□ -0.13
TOPBP1-209ENST00000513818 SETBP1Q9Y6X0 1596 aa14.25□□□□□ -0.13
TOPBP1-209ENST00000513818 ADAMTS13Q76LX8 1427 aa14.24□□□□□ -0.13
TOPBP1-209ENST00000513818 SETD1AO15047 1707 aaKnown RBP14.24□□□□□ -0.13
TOPBP1-209ENST00000513818 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.24□□□□□ -0.13
TOPBP1-209ENST00000513818 RTN4Q9NQC3 1192 aaKnown RBP14.24□□□□□ -0.13
TOPBP1-209ENST00000513818 MYOM2P54296 1465 aa14.24□□□□□ -0.13
TOPBP1-209ENST00000513818 STRCP1A6NGW2 1772 aa14.23□□□□□ -0.13
TOPBP1-209ENST00000513818 RPGRIP1LQ68CZ1 1315 aa14.22□□□□□ -0.13
TOPBP1-209ENST00000513818 NCBP3Q53F19 620 aaKnown RBP14.22□□□□□ -0.13
TOPBP1-209ENST00000513818 KDM2AQ9Y2K7 1162 aa14.22□□□□□ -0.13
TOPBP1-209ENST00000513818 ZNF335Q9H4Z2 1342 aaPredicted RBP14.21□□□□□ -0.13
TOPBP1-209ENST00000513818 HOXD11P31277 338 aaPredicted RBP14.21□□□□□ -0.13
TOPBP1-209ENST00000513818 HDGFP51858 240 aaKnown RBP14.21□□□□□ -0.13
TOPBP1-209ENST00000513818 DCAF11Q8TEB1 546 aa14.21□□□□□ -0.13
TOPBP1-209ENST00000513818 ALKQ9UM73 1620 aa14.21□□□□□ -0.13
TOPBP1-209ENST00000513818 PIK3C2GO75747 1445 aa14.21□□□□□ -0.13
TOPBP1-209ENST00000513818 DIP2AQ14689 1571 aa14.21□□□□□ -0.14
TOPBP1-209ENST00000513818 ASXL1Q8IXJ9 1541 aa14.2□□□□□ -0.14
TOPBP1-209ENST00000513818 NRXN1Q9ULB1 1477 aa14.2□□□□□ -0.14
TOPBP1-209ENST00000513818 VGFO15240 615 aaPredicted RBP14.19□□□□□ -0.14
TOPBP1-209ENST00000513818 L3MBTL2Q969R5 705 aa14.19□□□□□ -0.14
TOPBP1-209ENST00000513818 TONSLQ96HA7 1378 aa14.19□□□□□ -0.14
TOPBP1-209ENST00000513818 LTBP4Q8N2S1 1624 aa14.18□□□□□ -0.14
TOPBP1-209ENST00000513818 NWD1Q149M9 1564 aa14.17□□□□□ -0.14
TOPBP1-209ENST00000513818 PTPRUQ92729 1446 aa14.17□□□□□ -0.14
TOPBP1-209ENST00000513818 RNF216Q9NWF9 866 aaPredicted RBP14.17□□□□□ -0.14
TOPBP1-209ENST00000513818 METP08581 1390 aa14.17□□□□□ -0.14
TOPBP1-209ENST00000513818 LAMC1P11047 1609 aa14.16□□□□□ -0.14
TOPBP1-209ENST00000513818 CHD2O14647 1828 aaKnown RBP14.16□□□□□ -0.14
TOPBP1-209ENST00000513818 PRAG1Q86YV5 1406 aa14.15□□□□□ -0.14
TOPBP1-209ENST00000513818 XRN1Q8IZH2 1706 aaKnown RBP14.15□□□□□ -0.14
TOPBP1-209ENST00000513818 CFAP70Q5T0N1 1121 aa14.15□□□□□ -0.14
TOPBP1-209ENST00000513818 CLSPNQ9HAW4 1339 aa14.14□□□□□ -0.15
TOPBP1-209ENST00000513818 TMEM132EQ6IEE7 984 aa14.13□□□□□ -0.15
TOPBP1-209ENST00000513818 TBX22Q9Y458 520 aa14.13□□□□□ -0.15
TOPBP1-209ENST00000513818 TRPM1Q7Z4N2 1603 aa14.12□□□□□ -0.15
TOPBP1-209ENST00000513818 RBM33Q96EV2 1170 aaKnown RBP14.12□□□□□ -0.15
TOPBP1-209ENST00000513818 ADGRB1O14514 1584 aa14.12□□□□□ -0.15
TOPBP1-209ENST00000513818 DCAF8L1A6NGE4 600 aa14.11□□□□□ -0.15
TOPBP1-209ENST00000513818 XIRP1Q702N8 1843 aaKnown RBP14.11□□□□□ -0.15
TOPBP1-209ENST00000513818 CPS1P31327 1500 aa14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 KIAA1210Q9ULL0 1709 aa14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 KCNA6P17658 529 aa14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 NBPF8Q3BBV2 869 aa14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 C14orf93Q9H972 538 aaKnown RBP14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 NKTRP30414 1462 aaKnown RBP14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 LRRC7Q96NW7 1537 aa14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 KNDC1Q76NI1 1749 aa14.1□□□□□ -0.15
TOPBP1-209ENST00000513818 PIK3R4Q99570 1358 aa14.09□□□□□ -0.15
TOPBP1-209ENST00000513818 STK26Q9P289 416 aa14.09□□□□□ -0.15
TOPBP1-209ENST00000513818 AMOTL2Q9Y2J4 779 aa14.09□□□□□ -0.15
TOPBP1-209ENST00000513818 YTHDC2Q9H6S0 1430 aaKnown RBP14.07□□□□□ -0.16
TOPBP1-209ENST00000513818 NBPF1Q3BBV0 1214 aa14.07□□□□□ -0.16
TOPBP1-209ENST00000513818 ROBO2Q9HCK4 1378 aa14.07□□□□□ -0.16
TOPBP1-209ENST00000513818 NALCNQ8IZF0 1738 aa14.07□□□□□ -0.16
TOPBP1-209ENST00000513818 NPM3O75607 178 aaKnown RBP14.06□□□□□ -0.16
TOPBP1-209ENST00000513818 ARHGEF28Q8N1W1 1705 aaKnown RBP14.06□□□□□ -0.16
TOPBP1-209ENST00000513818 LRPPRCP42704 1394 aaKnown RBP14.06□□□□□ -0.16
TOPBP1-209ENST00000513818 TMEM94Q12767 1356 aa14.06□□□□□ -0.16
TOPBP1-209ENST00000513818 RALGAPBQ86X10 1494 aa14.06□□□□□ -0.16
TOPBP1-209ENST00000513818 PLEKHH1Q9ULM0 1364 aa14.05□□□□□ -0.16
TOPBP1-209ENST00000513818 PTCH1Q13635 1447 aa14.05□□□□□ -0.16
TOPBP1-209ENST00000513818 PROSER2Q86WR7 435 aaPredicted RBP14.04□□□□□ -0.16
TOPBP1-209ENST00000513818 STAC3Q96MF2 364 aa14.04□□□□□ -0.16
TOPBP1-209ENST00000513818 ROCK2O75116 1388 aaKnown RBP14.04□□□□□ -0.16
TOPBP1-209ENST00000513818 CERKQ8TCT0 537 aa14.03□□□□□ -0.16
TOPBP1-209ENST00000513818 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms