RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 FYCO1Q9BQS8 1478 aa5.26□□□□□ -1.57
VCAN-209ENST00000513016 ABTB2Q8N961 1025 aa5.26□□□□□ -1.57
VCAN-209ENST00000513016 ROCK1Q13464 1354 aa5.26□□□□□ -1.57
VCAN-209ENST00000513016 EIF2S2P20042 333 aaKnown RBP5.25□□□□□ -1.57
VCAN-209ENST00000513016 GAS2L2Q8NHY3 880 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 CCDC47Q96A33 483 aaKnown RBP5.25□□□□□ -1.57
VCAN-209ENST00000513016 RRBP1Q9P2E9 1410 aaKnown RBP5.25□□□□□ -1.57
VCAN-209ENST00000513016 CNKSR2Q8WXI2 1034 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 SPG7Q9UQ90 795 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 RPGRIP1LQ68CZ1 1315 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 PPP1R1BQ9UD71 204 aaPredicted RBP5.25□□□□□ -1.57
VCAN-209ENST00000513016 CUX1P39880 1505 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 G3BP1Q13283 466 aaKnown RBP eCLIP5.25□□□□□ -1.57
VCAN-209ENST00000513016 STRN4Q9NRL3 753 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 PPP6R1Q9UPN7 881 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 SENP3-EIF4A1A0A087X0R7 540 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 RCAN3Q9UKA8 241 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 TOM1L2Q6ZVM7 507 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 RIC3Q7Z5B4 369 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 PNISRQ8TF01 805 aaKnown RBP5.25□□□□□ -1.57
VCAN-209ENST00000513016 PANK3Q9H999 370 aa5.25□□□□□ -1.57
VCAN-209ENST00000513016 TRDNQ13061 729 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 SYAP1Q96A49 352 aaPredicted RBP5.24□□□□□ -1.57
VCAN-209ENST00000513016 ERICH6BQ5W0A0 696 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 ERICH2A1L162 156 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 RAD21O60216 631 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 GNAI1P63096 354 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 AFAP1Q8N556 730 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 PRDM11Q9NQV5 511 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 TCERG1O14776 1098 aaKnown RBP5.24□□□□□ -1.57
VCAN-209ENST00000513016 CCDC43Q96MW1 224 aaKnown RBP5.24□□□□□ -1.57
VCAN-209ENST00000513016 RBM42Q9BTD8 480 aaKnown RBP5.24□□□□□ -1.57
VCAN-209ENST00000513016 KIF16BQ96L93 1317 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 TOM1O60784 492 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 TSPYL4Q9UJ04 414 aa5.24□□□□□ -1.57
VCAN-209ENST00000513016 MYBBP1AQ9BQG0 1328 aaKnown RBP5.23□□□□□ -1.57
VCAN-209ENST00000513016 ST20-MTHFSA0A0A6YYL1 179 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 DHX16O60231 1041 aaKnown RBP5.23□□□□□ -1.57
VCAN-209ENST00000513016 IFIT2P09913 472 aaKnown RBP5.23□□□□□ -1.57
VCAN-209ENST00000513016 TRIM29Q14134 588 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 SF3A1Q15459 793 aaKnown RBP5.23□□□□□ -1.57
VCAN-209ENST00000513016 TPM2P07951 284 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 E9PSI1 815 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 WWC2Q6AWC2 1192 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 DRC7Q8IY82 874 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 LRPPRCP42704 1394 aaKnown RBP5.23□□□□□ -1.57
VCAN-209ENST00000513016 CC2D2AQ9P2K1 1620 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 GBP4Q96PP9 640 aa5.23□□□□□ -1.57
VCAN-209ENST00000513016 GNL3LQ9NVN8 582 aaKnown RBP5.23□□□□□ -1.57
VCAN-209ENST00000513016 R3HCC1Q9Y3T6 440 aaKnown RBP5.22□□□□□ -1.57
VCAN-209ENST00000513016 ANKRD50Q9ULJ7 1429 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 CABP4P57796 275 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 B4GALNT3Q6L9W6 998 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 CFTRP13569 1480 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 APPP05067 770 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 NBR1Q14596 966 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 ZKSCAN2Q63HK3 967 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 CCDC146Q8IYE0 955 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 FAM184AQ8NB25 1140 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 KCNH5Q8NCM2 988 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 DIAPH3Q9NSV4 1193 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 USP35Q9P2H5 1018 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 SCAPERQ9BY12 1400 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 SLC3A2P08195 630 aaKnown RBP5.22□□□□□ -1.57
VCAN-209ENST00000513016 MFAP1P55081 439 aaKnown RBP5.22□□□□□ -1.57
VCAN-209ENST00000513016 SNAPC4Q5SXM2 1469 aa5.22□□□□□ -1.57
VCAN-209ENST00000513016 HFM1A2PYH4 1435 aa5.21□□□□□ -1.57
VCAN-209ENST00000513016 PRDM2Q13029 1718 aa5.21□□□□□ -1.57
VCAN-209ENST00000513016 ST18O60284 1047 aa5.21□□□□□ -1.57
VCAN-209ENST00000513016 FKBP5Q13451 457 aaPredicted RBP5.21□□□□□ -1.57
VCAN-209ENST00000513016 RNF20Q5VTR2 975 aa5.21□□□□□ -1.57
VCAN-209ENST00000513016 TBC1D2BQ9UPU7 963 aa5.21□□□□□ -1.57
VCAN-209ENST00000513016 RIPK4P57078 832 aa5.21□□□□□ -1.58
VCAN-209ENST00000513016 CD109Q6YHK3 1445 aa5.21□□□□□ -1.58
VCAN-209ENST00000513016 ERC2O15083 957 aa5.21□□□□□ -1.58
VCAN-209ENST00000513016 AKNAQ7Z591 1439 aa5.21□□□□□ -1.58
VCAN-209ENST00000513016 HMGXB3Q12766 1538 aa5.21□□□□□ -1.58
VCAN-209ENST00000513016 ZKSCAN1P17029 563 aaPredicted RBP5.21□□□□□ -1.58
VCAN-209ENST00000513016 RUNDC1Q96C34 613 aa5.21□□□□□ -1.58
VCAN-209ENST00000513016 NOC3LQ8WTT2 800 aaKnown RBP5.2□□□□□ -1.58
VCAN-209ENST00000513016 H3BQV1 296 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 IFFO2Q5TF58 517 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 CCDC30Q5VVM6 783 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 NUTM2GQ5VZR2 741 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 CASKIN1Q8WXD9 1431 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 ELL2O00472 640 aaPredicted RBP5.2□□□□□ -1.58
VCAN-209ENST00000513016 CCDC27Q2M243 656 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 NGLY1Q96IV0 654 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 ZNF652Q9Y2D9 606 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 TPD52L1Q16890 204 aaPredicted RBP5.2□□□□□ -1.58
VCAN-209ENST00000513016 TSR1Q2NL82 804 aaKnown RBP5.2□□□□□ -1.58
VCAN-209ENST00000513016 RILPL2Q969X0 211 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 RRP7AQ9Y3A4 280 aaKnown RBP5.2□□□□□ -1.58
VCAN-209ENST00000513016 TMOD2Q9NZR1 351 aa5.2□□□□□ -1.58
VCAN-209ENST00000513016 RAPGEF3O95398 923 aa5.19□□□□□ -1.58
VCAN-209ENST00000513016 DDX54Q8TDD1 881 aaKnown RBP5.19□□□□□ -1.58
VCAN-209ENST00000513016 ATP6V1DQ9Y5K8 247 aa5.19□□□□□ -1.58
VCAN-209ENST00000513016 RTEL1-TNFRSF6BF6WH68 1400 aa5.19□□□□□ -1.58
VCAN-209ENST00000513016 IKQ13123 557 aaPredicted RBP5.19□□□□□ -1.58
VCAN-209ENST00000513016 PRAM1Q96QH2 718 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms