RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 DMRT2Q9Y5R5 561 aa12.05□□□□□ -0.48
LIMCH1-215ENST00000512632 TRAPPC8Q9Y2L5 1435 aa12.05□□□□□ -0.48
LIMCH1-215ENST00000512632 INSRP06213 1382 aa12.05□□□□□ -0.48
LIMCH1-215ENST00000512632 TNNT2P45379 298 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-215ENST00000512632 FAM161AQ3B820 660 aa12.05□□□□□ -0.48
LIMCH1-215ENST00000512632 USP35Q9P2H5 1018 aa12.05□□□□□ -0.48
LIMCH1-215ENST00000512632 KIF3BO15066 747 aa12.04□□□□□ -0.48
LIMCH1-215ENST00000512632 NFKBIBQ15653 356 aa12.03□□□□□ -0.48
LIMCH1-215ENST00000512632 C8orf34Q49A92 452 aa12.03□□□□□ -0.48
LIMCH1-215ENST00000512632 UNC13BO14795 1591 aa12.03□□□□□ -0.48
LIMCH1-215ENST00000512632 DUOX2Q9NRD8 1548 aa12.03□□□□□ -0.48
LIMCH1-215ENST00000512632 CHGAP10645 457 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-215ENST00000512632 CARD14Q9BXL6 1004 aa12.02□□□□□ -0.49
LIMCH1-215ENST00000512632 CANXP27824 592 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-215ENST00000512632 ATP10AO60312 1499 aa12.01□□□□□ -0.49
LIMCH1-215ENST00000512632 RRP7AQ9Y3A4 280 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-215ENST00000512632 IGHDP01880 384 aa12.01□□□□□ -0.49
LIMCH1-215ENST00000512632 FRAT1Q92837 279 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-215ENST00000512632 PLCH2O75038 1416 aa12.01□□□□□ -0.49
LIMCH1-215ENST00000512632 ERCC6L2Q5T890 1561 aa12□□□□□ -0.49
LIMCH1-215ENST00000512632 IQGAP3Q86VI3 1631 aa12□□□□□ -0.49
LIMCH1-215ENST00000512632 EIF2AK4Q9P2K8 1649 aaKnown RBP12□□□□□ -0.49
LIMCH1-215ENST00000512632 COG6Q9Y2V7 657 aa12□□□□□ -0.49
LIMCH1-215ENST00000512632 SCAF11Q99590 1463 aaKnown RBP12□□□□□ -0.49
LIMCH1-215ENST00000512632 ADGRF5Q8IZF2 1346 aa12□□□□□ -0.49
LIMCH1-215ENST00000512632 PANK1Q8TE04 598 aa12□□□□□ -0.49
LIMCH1-215ENST00000512632 TRMT2AQ8IZ69 625 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-215ENST00000512632 E9PSI1 815 aa11.99□□□□□ -0.49
LIMCH1-215ENST00000512632 MAST1Q9Y2H9 1570 aa11.99□□□□□ -0.49
LIMCH1-215ENST00000512632 ASXL1Q8IXJ9 1541 aa11.98□□□□□ -0.49
LIMCH1-215ENST00000512632 GSE1Q14687 1217 aa11.98□□□□□ -0.49
LIMCH1-215ENST00000512632 LAMC1P11047 1609 aa11.98□□□□□ -0.49
LIMCH1-215ENST00000512632 MYO5CQ9NQX4 1742 aa11.97□□□□□ -0.49
LIMCH1-215ENST00000512632 TRAK1Q9UPV9 953 aa11.97□□□□□ -0.49
LIMCH1-215ENST00000512632 BCL2L13Q9BXK5 485 aa11.97□□□□□ -0.49
LIMCH1-215ENST00000512632 BRPF3Q9ULD4 1205 aa11.97□□□□□ -0.49
LIMCH1-215ENST00000512632 PIK3C2GO75747 1445 aa11.97□□□□□ -0.49
LIMCH1-215ENST00000512632 FRAT2O75474 233 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-215ENST00000512632 SLC12A5Q9H2X9 1139 aa11.96□□□□□ -0.49
LIMCH1-215ENST00000512632 SENP3Q9H4L4 574 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-215ENST00000512632 CENPJQ9HC77 1338 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-215ENST00000512632 PLXNC1O60486 1568 aa11.96□□□□□ -0.49
LIMCH1-215ENST00000512632 WWC1Q8IX03 1113 aa11.96□□□□□ -0.49
LIMCH1-215ENST00000512632 EIF3AQ14152 1382 aaKnown RBP11.96□□□□□ -0.5
LIMCH1-215ENST00000512632 MORC1Q86VD1 984 aa11.96□□□□□ -0.5
LIMCH1-215ENST00000512632 STAC3Q96MF2 364 aa11.96□□□□□ -0.5
LIMCH1-215ENST00000512632 NKTRP30414 1462 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-215ENST00000512632 ABCC2Q92887 1545 aa11.95□□□□□ -0.5
LIMCH1-215ENST00000512632 SEC24BO95487 1268 aa11.95□□□□□ -0.5
LIMCH1-215ENST00000512632 ANO8Q9HCE9 1232 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-215ENST00000512632 KANK1Q14678 1352 aa11.95□□□□□ -0.5
LIMCH1-215ENST00000512632 TNNQ9UQP3 1299 aa11.95□□□□□ -0.5
LIMCH1-215ENST00000512632 CLUAP1Q96AJ1 413 aa11.94□□□□□ -0.5
LIMCH1-215ENST00000512632 TMEM132EQ6IEE7 984 aa11.94□□□□□ -0.5
LIMCH1-215ENST00000512632 SCAPERQ9BY12 1400 aa11.94□□□□□ -0.5
LIMCH1-215ENST00000512632 MADDQ8WXG6 1647 aa11.93□□□□□ -0.5
LIMCH1-215ENST00000512632 NPC1L1Q9UHC9 1359 aa11.93□□□□□ -0.5
LIMCH1-215ENST00000512632 TCP11L2Q8N4U5 519 aa11.93□□□□□ -0.5
LIMCH1-215ENST00000512632 CGNL1Q0VF96 1302 aa11.92□□□□□ -0.5
LIMCH1-215ENST00000512632 PDE3AQ14432 1141 aa11.92□□□□□ -0.5
LIMCH1-215ENST00000512632 PTPRTO14522 1441 aa11.92□□□□□ -0.5
LIMCH1-215ENST00000512632 NUTM2DQ5VT03 806 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-215ENST00000512632 RNF17Q9BXT8 1623 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-215ENST00000512632 MTHFSP49914 203 aa11.91□□□□□ -0.5
LIMCH1-215ENST00000512632 SLKQ9H2G2 1235 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-215ENST00000512632 UGGT1Q9NYU2 1555 aa11.91□□□□□ -0.5
LIMCH1-215ENST00000512632 RLBP1P12271 317 aa11.9□□□□□ -0.5
LIMCH1-215ENST00000512632 SYNMO15061 1565 aa11.9□□□□□ -0.5
LIMCH1-215ENST00000512632 ABCC1P33527 1531 aa11.9□□□□□ -0.5
LIMCH1-215ENST00000512632 ERVK-7P63135 1459 aa11.9□□□□□ -0.5
LIMCH1-215ENST00000512632 PCDHB15Q9Y5E8 787 aa11.9□□□□□ -0.5
LIMCH1-215ENST00000512632 SLC24A1O60721 1099 aa11.9□□□□□ -0.51
LIMCH1-215ENST00000512632 TRPM2O94759 1503 aa11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 USP19O94966 1318 aa11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 CLTCL1P53675 1640 aa11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 RARSP54136 660 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 GGT6Q6P531 493 aa11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 RUNDC1Q96C34 613 aa11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 IQGAP1P46940 1657 aa11.89□□□□□ -0.51
LIMCH1-215ENST00000512632 SAFB2Q14151 953 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIMCH1-215ENST00000512632 CHD1O14646 1710 aa11.88□□□□□ -0.51
LIMCH1-215ENST00000512632 NSD3Q9BZ95 1437 aa11.88□□□□□ -0.51
LIMCH1-215ENST00000512632 NGEFQ8N5V2 710 aa11.87□□□□□ -0.51
LIMCH1-215ENST00000512632 RTEL1-TNFRSF6BF6WH68 1400 aa11.87□□□□□ -0.51
LIMCH1-215ENST00000512632 U2AF1L5P0DN76 240 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-215ENST00000512632 U2AF1Q01081 240 aaKnown RBP eCLIP11.87□□□□□ -0.51
LIMCH1-215ENST00000512632 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-215ENST00000512632 MAPK8IP3Q9UPT6 1336 aa11.86□□□□□ -0.51
LIMCH1-215ENST00000512632 POLR3AO14802 1390 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-215ENST00000512632 PDZRN3Q9UPQ7 1066 aa11.86□□□□□ -0.51
LIMCH1-215ENST00000512632 NOS1P29475 1434 aa11.85□□□□□ -0.51
LIMCH1-215ENST00000512632 SPRYD3Q8NCJ5 442 aa11.85□□□□□ -0.51
LIMCH1-215ENST00000512632 CLASP1Q7Z460 1538 aa11.85□□□□□ -0.51
LIMCH1-215ENST00000512632 CFAP53Q96M91 514 aa11.84□□□□□ -0.51
LIMCH1-215ENST00000512632 ZFYVE16Q7Z3T8 1539 aa11.84□□□□□ -0.51
LIMCH1-215ENST00000512632 FANCAO15360 1455 aa11.84□□□□□ -0.51
LIMCH1-215ENST00000512632 PMFBP1Q8TBY8 1022 aa11.84□□□□□ -0.51
LIMCH1-215ENST00000512632 ZCCHC11Q5TAX3 1644 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-215ENST00000512632 BECN1Q14457 450 aa11.84□□□□□ -0.51
LIMCH1-215ENST00000512632 TSR2Q969E8 191 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms