RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 RPRD2Q5VT52 1461 aaKnown RBP17.15■□□□□ 0.34
LIMCH1-214ENST00000512228 NUP155O75694 1391 aa17.14■□□□□ 0.33
LIMCH1-214ENST00000512228 ZFYVE9O95405 1425 aa17.13■□□□□ 0.33
LIMCH1-214ENST00000512228 KCNA6P17658 529 aa17.13■□□□□ 0.33
LIMCH1-214ENST00000512228 IQGAP3Q86VI3 1631 aa17.12■□□□□ 0.33
LIMCH1-214ENST00000512228 CHGAP10645 457 aaKnown RBP17.11■□□□□ 0.33
LIMCH1-214ENST00000512228 BCANQ96GW7 911 aa17.1■□□□□ 0.33
LIMCH1-214ENST00000512228 TMEM94Q12767 1356 aa17.1■□□□□ 0.33
LIMCH1-214ENST00000512228 RIMS2Q9UQ26 1411 aa17.1■□□□□ 0.33
LIMCH1-214ENST00000512228 PROSER2Q86WR7 435 aaPredicted RBP17.09■□□□□ 0.33
LIMCH1-214ENST00000512228 RRBP1Q9P2E9 1410 aaKnown RBP17.08■□□□□ 0.32
LIMCH1-214ENST00000512228 SOCS7O14512 581 aa17.07■□□□□ 0.32
LIMCH1-214ENST00000512228 PLEKHG1Q9ULL1 1385 aa17.06■□□□□ 0.32
LIMCH1-214ENST00000512228 CHD2O14647 1828 aaKnown RBP17.06■□□□□ 0.32
LIMCH1-214ENST00000512228 MED1Q15648 1581 aaPredicted RBP17.05■□□□□ 0.32
LIMCH1-214ENST00000512228 ADAMTS13Q76LX8 1427 aa17.04■□□□□ 0.32
LIMCH1-214ENST00000512228 TBX22Q9Y458 520 aa17.04■□□□□ 0.32
LIMCH1-214ENST00000512228 PPP1R15AO75807 674 aaPredicted RBP17.03■□□□□ 0.32
LIMCH1-214ENST00000512228 NAIPQ13075 1403 aa17.03■□□□□ 0.32
LIMCH1-214ENST00000512228 NWD1Q149M9 1564 aa17.02■□□□□ 0.32
LIMCH1-214ENST00000512228 HDGFP51858 240 aaKnown RBP17.01■□□□□ 0.31
LIMCH1-214ENST00000512228 FAM135BQ49AJ0 1406 aa16.99■□□□□ 0.31
LIMCH1-214ENST00000512228 PTPRUQ92729 1446 aa16.99■□□□□ 0.31
LIMCH1-214ENST00000512228 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.99■□□□□ 0.31
LIMCH1-214ENST00000512228 SPHKAPQ2M3C7 1700 aa16.99■□□□□ 0.31
LIMCH1-214ENST00000512228 RGS17Q9UGC6 210 aaPredicted RBP16.98■□□□□ 0.31
LIMCH1-214ENST00000512228 SLAIN2Q9P270 581 aa16.97■□□□□ 0.31
LIMCH1-214ENST00000512228 NKTRP30414 1462 aaKnown RBP16.97■□□□□ 0.31
LIMCH1-214ENST00000512228 ROBO1Q9Y6N7 1651 aa16.97■□□□□ 0.31
LIMCH1-214ENST00000512228 NRXN3Q9Y4C0 1643 aa16.96■□□□□ 0.3
LIMCH1-214ENST00000512228 CLTCL1P53675 1640 aa16.95■□□□□ 0.3
LIMCH1-214ENST00000512228 TRIM52Q96A61 297 aa16.94■□□□□ 0.3
LIMCH1-214ENST00000512228 AMOTL2Q9Y2J4 779 aa16.94■□□□□ 0.3
LIMCH1-214ENST00000512228 FOXD1Q16676 465 aa16.93■□□□□ 0.3
LIMCH1-214ENST00000512228 ZNF326Q5BKZ1 582 aaKnown RBP16.93■□□□□ 0.3
LIMCH1-214ENST00000512228 METP08581 1390 aa16.92■□□□□ 0.3
LIMCH1-214ENST00000512228 MSH6P52701 1360 aa16.92■□□□□ 0.3
LIMCH1-214ENST00000512228 HFM1A2PYH4 1435 aa16.91■□□□□ 0.3
LIMCH1-214ENST00000512228 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.9■□□□□ 0.3
LIMCH1-214ENST00000512228 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
LIMCH1-214ENST00000512228 C19orf44Q9H6X5 657 aa16.89■□□□□ 0.29
LIMCH1-214ENST00000512228 NEXMIFQ5QGS0 1516 aa16.89■□□□□ 0.29
LIMCH1-214ENST00000512228 PIK3R4Q99570 1358 aa16.89■□□□□ 0.29
LIMCH1-214ENST00000512228 TRPM2O94759 1503 aa16.88■□□□□ 0.29
LIMCH1-214ENST00000512228 SLC4A1APQ9BWU0 796 aaKnown RBP16.88■□□□□ 0.29
LIMCH1-214ENST00000512228 SETBP1Q9Y6X0 1596 aa16.88■□□□□ 0.29
LIMCH1-214ENST00000512228 DIP2AQ14689 1571 aa16.87■□□□□ 0.29
LIMCH1-214ENST00000512228 C14orf37Q86TY3 774 aa16.87■□□□□ 0.29
LIMCH1-214ENST00000512228 KIF1BO60333 1816 aa16.86■□□□□ 0.29
LIMCH1-214ENST00000512228 NCOA3Q9Y6Q9 1424 aa16.86■□□□□ 0.29
LIMCH1-214ENST00000512228 PHLPP1O60346 1717 aa16.85■□□□□ 0.29
LIMCH1-214ENST00000512228 XRN1Q8IZH2 1706 aaKnown RBP16.85■□□□□ 0.29
LIMCH1-214ENST00000512228 POTEAQ6S8J7 498 aa16.84■□□□□ 0.29
LIMCH1-214ENST00000512228 ATF3P18847 181 aa16.82■□□□□ 0.28
LIMCH1-214ENST00000512228 CADPS2Q86UW7 1296 aa16.82■□□□□ 0.28
LIMCH1-214ENST00000512228 COL16A1Q07092 1604 aaPredicted RBP16.81■□□□□ 0.28
LIMCH1-214ENST00000512228 BRINP3Q76B58 766 aa16.81■□□□□ 0.28
LIMCH1-214ENST00000512228 MPHOSPH9Q99550 1183 aa16.81■□□□□ 0.28
LIMCH1-214ENST00000512228 SETD1AO15047 1707 aaKnown RBP16.8■□□□□ 0.28
LIMCH1-214ENST00000512228 DDX17Q92841 729 aaKnown RBP16.8■□□□□ 0.28
LIMCH1-214ENST00000512228 VGFO15240 615 aaPredicted RBP16.78■□□□□ 0.28
LIMCH1-214ENST00000512228 PPLO60437 1756 aa16.78■□□□□ 0.28
LIMCH1-214ENST00000512228 ADGRF5Q8IZF2 1346 aa16.77■□□□□ 0.28
LIMCH1-214ENST00000512228 RGL3Q3MIN7 710 aa16.77■□□□□ 0.28
LIMCH1-214ENST00000512228 MST1RQ04912 1400 aa16.77■□□□□ 0.27
LIMCH1-214ENST00000512228 ROBO2Q9HCK4 1378 aa16.77■□□□□ 0.27
LIMCH1-214ENST00000512228 JCADQ9P266 1359 aa16.77■□□□□ 0.27
LIMCH1-214ENST00000512228 RPGRIP1LQ68CZ1 1315 aa16.75■□□□□ 0.27
LIMCH1-214ENST00000512228 LRP6O75581 1613 aa16.75■□□□□ 0.27
LIMCH1-214ENST00000512228 NALCNQ8IZF0 1738 aa16.75■□□□□ 0.27
LIMCH1-214ENST00000512228 AHDC1Q5TGY3 1603 aaPredicted RBP16.74■□□□□ 0.27
LIMCH1-214ENST00000512228 SPATA31E1Q6ZUB1 1445 aa16.73■□□□□ 0.27
LIMCH1-214ENST00000512228 ADGRL3Q9HAR2 1447 aa16.71■□□□□ 0.27
LIMCH1-214ENST00000512228 ASXL1Q8IXJ9 1541 aa16.71■□□□□ 0.27
LIMCH1-214ENST00000512228 ORAI2Q96SN7 254 aa16.71■□□□□ 0.27
LIMCH1-214ENST00000512228 DCCP43146 1447 aa16.7■□□□□ 0.26
LIMCH1-214ENST00000512228 TMEM132EQ6IEE7 984 aa16.7■□□□□ 0.26
LIMCH1-214ENST00000512228 NUTM2BA6NNL0 878 aaPredicted RBP16.69■□□□□ 0.26
LIMCH1-214ENST00000512228 NUTM2EB1AL46 878 aaPredicted RBP16.69■□□□□ 0.26
LIMCH1-214ENST00000512228 WAPLQ7Z5K2 1190 aa16.69■□□□□ 0.26
LIMCH1-214ENST00000512228 NUTM2AQ8IVF1 878 aaPredicted RBP16.69■□□□□ 0.26
LIMCH1-214ENST00000512228 SETD5Q9C0A6 1442 aa16.69■□□□□ 0.26
LIMCH1-214ENST00000512228 IFT172Q9UG01 1749 aa16.68■□□□□ 0.26
LIMCH1-214ENST00000512228 NHSL1Q5SYE7 1610 aa16.68■□□□□ 0.26
LIMCH1-214ENST00000512228 STK26Q9P289 416 aa16.68■□□□□ 0.26
LIMCH1-214ENST00000512228 CCDC144AA2RUR9 1427 aa16.68■□□□□ 0.26
LIMCH1-214ENST00000512228 SHPRHQ149N8 1683 aa16.68■□□□□ 0.26
LIMCH1-214ENST00000512228 SPATA31A6Q5VVP1 1343 aa16.68■□□□□ 0.26
LIMCH1-214ENST00000512228 C1orf167Q5SNV9 1468 aa16.67■□□□□ 0.26
LIMCH1-214ENST00000512228 PTCH1Q13635 1447 aa16.65■□□□□ 0.26
LIMCH1-214ENST00000512228 RAB3GAP2Q9H2M9 1393 aa16.64■□□□□ 0.26
LIMCH1-214ENST00000512228 PLEKHH1Q9ULM0 1364 aa16.64■□□□□ 0.26
LIMCH1-214ENST00000512228 PRAG1Q86YV5 1406 aa16.64■□□□□ 0.25
LIMCH1-214ENST00000512228 LRRC59Q96AG4 307 aaKnown RBP16.63■□□□□ 0.25
LIMCH1-214ENST00000512228 MEX3CQ5U5Q3 659 aaKnown RBP16.62■□□□□ 0.25
LIMCH1-214ENST00000512228 NUTM2FA1L443 756 aa16.61■□□□□ 0.25
LIMCH1-214ENST00000512228 CFAP70Q5T0N1 1121 aa16.61■□□□□ 0.25
LIMCH1-214ENST00000512228 C14orf93Q9H972 538 aaKnown RBP16.61■□□□□ 0.25
LIMCH1-214ENST00000512228 PNPLA6Q8IY17 1366 aa16.61■□□□□ 0.25
LIMCH1-214ENST00000512228 ANKRD30BQ9BXX2 1392 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms