RNA–Protein interactions for RNA: ENST00000509101.1

CXCL1-202, Transcript of C-X-C motif chemokine ligand 1, humanhuman

TSL 3

Gene CXCL1, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-202ENST00000509101 PROSER2Q86WR7 435 aaPredicted RBP25.04■■□□□ 1.6
CXCL1-202ENST00000509101 PHLPP1O60346 1717 aa25.03■■□□□ 1.6
CXCL1-202ENST00000509101 CHD2O14647 1828 aaKnown RBP25.02■■□□□ 1.6
CXCL1-202ENST00000509101 RPRD2Q5VT52 1461 aaKnown RBP24.99■■□□□ 1.59
CXCL1-202ENST00000509101 MSH6P52701 1360 aa24.98■■□□□ 1.59
CXCL1-202ENST00000509101 BCANQ96GW7 911 aa24.98■■□□□ 1.59
CXCL1-202ENST00000509101 SETD1AO15047 1707 aaKnown RBP24.98■■□□□ 1.59
CXCL1-202ENST00000509101 TMEM131LA2VDJ0 1609 aa24.97■■□□□ 1.59
CXCL1-202ENST00000509101 ZFYVE9O95405 1425 aa24.97■■□□□ 1.59
CXCL1-202ENST00000509101 POTEAQ6S8J7 498 aa24.96■■□□□ 1.59
CXCL1-202ENST00000509101 SLC52A1Q9NWF4 448 aa24.96■■□□□ 1.59
CXCL1-202ENST00000509101 ANKRD50Q9ULJ7 1429 aa24.95■■□□□ 1.58
CXCL1-202ENST00000509101 RIMS2Q9UQ26 1411 aa24.94■■□□□ 1.58
CXCL1-202ENST00000509101 PLEKHG1Q9ULL1 1385 aa24.93■■□□□ 1.58
CXCL1-202ENST00000509101 UNC13BO14795 1591 aa24.93■■□□□ 1.58
CXCL1-202ENST00000509101 COL16A1Q07092 1604 aaPredicted RBP24.92■■□□□ 1.58
CXCL1-202ENST00000509101 PPP1R15AO75807 674 aaPredicted RBP24.91■■□□□ 1.58
CXCL1-202ENST00000509101 FAM50AQ14320 339 aaKnown RBP24.91■■□□□ 1.58
CXCL1-202ENST00000509101 E9PCH4 1651 aa24.91■■□□□ 1.58
CXCL1-202ENST00000509101 SLAIN2Q9P270 581 aa24.88■■□□□ 1.57
CXCL1-202ENST00000509101 JCADQ9P266 1359 aa24.87■■□□□ 1.57
CXCL1-202ENST00000509101 DIP2AQ14689 1571 aa24.86■■□□□ 1.57
CXCL1-202ENST00000509101 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.86■■□□□ 1.57
CXCL1-202ENST00000509101 IQGAP3Q86VI3 1631 aa24.83■■□□□ 1.57
CXCL1-202ENST00000509101 CHGAP10645 457 aaKnown RBP24.82■■□□□ 1.56
CXCL1-202ENST00000509101 ADAMTS13Q76LX8 1427 aa24.81■■□□□ 1.56
CXCL1-202ENST00000509101 HDGFP51858 240 aaKnown RBP24.81■■□□□ 1.56
CXCL1-202ENST00000509101 LRP6O75581 1613 aa24.81■■□□□ 1.56
CXCL1-202ENST00000509101 SHPRHQ149N8 1683 aa24.81■■□□□ 1.56
CXCL1-202ENST00000509101 AHDC1Q5TGY3 1603 aaPredicted RBP24.8■■□□□ 1.56
CXCL1-202ENST00000509101 NCOA3Q9Y6Q9 1424 aa24.79■■□□□ 1.56
CXCL1-202ENST00000509101 NUTM2DQ5VT03 806 aaPredicted RBP24.79■■□□□ 1.56
CXCL1-202ENST00000509101 C14orf37Q86TY3 774 aa24.79■■□□□ 1.56
CXCL1-202ENST00000509101 TBX22Q9Y458 520 aa24.79■■□□□ 1.56
CXCL1-202ENST00000509101 TRPM2O94759 1503 aa24.77■■□□□ 1.56
CXCL1-202ENST00000509101 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.77■■□□□ 1.56
CXCL1-202ENST00000509101 PIK3R4Q99570 1358 aa24.73■■□□□ 1.55
CXCL1-202ENST00000509101 SPATA31A6Q5VVP1 1343 aa24.72■■□□□ 1.55
CXCL1-202ENST00000509101 NRXN3Q9Y4C0 1643 aa24.72■■□□□ 1.55
CXCL1-202ENST00000509101 MEX3CQ5U5Q3 659 aaKnown RBP24.71■■□□□ 1.55
CXCL1-202ENST00000509101 CADPS2Q86UW7 1296 aa24.71■■□□□ 1.55
CXCL1-202ENST00000509101 SPHKAPQ2M3C7 1700 aa24.71■■□□□ 1.55
CXCL1-202ENST00000509101 XRN1Q8IZH2 1706 aaKnown RBP24.71■■□□□ 1.55
CXCL1-202ENST00000509101 ATF3P18847 181 aa24.7■■□□□ 1.54
CXCL1-202ENST00000509101 PTPRUQ92729 1446 aa24.69■■□□□ 1.54
CXCL1-202ENST00000509101 ROCK1Q13464 1354 aa24.69■■□□□ 1.54
CXCL1-202ENST00000509101 C19orf44Q9H6X5 657 aa24.69■■□□□ 1.54
CXCL1-202ENST00000509101 NHSL1Q5SYE7 1610 aa24.66■■□□□ 1.54
CXCL1-202ENST00000509101 AMOTL2Q9Y2J4 779 aa24.65■■□□□ 1.54
CXCL1-202ENST00000509101 SETBP1Q9Y6X0 1596 aa24.65■■□□□ 1.54
CXCL1-202ENST00000509101 ASXL1Q8IXJ9 1541 aa24.65■■□□□ 1.54
CXCL1-202ENST00000509101 NUP155O75694 1391 aa24.65■■□□□ 1.54
CXCL1-202ENST00000509101 ZNF772Q68DY9 489 aaPredicted RBP24.64■■□□□ 1.54
CXCL1-202ENST00000509101 DCCP43146 1447 aa24.63■■□□□ 1.53
CXCL1-202ENST00000509101 BRINP3Q76B58 766 aa24.63■■□□□ 1.53
CXCL1-202ENST00000509101 TRIM52Q96A61 297 aa24.63■■□□□ 1.53
CXCL1-202ENST00000509101 NALCNQ8IZF0 1738 aa24.6■■□□□ 1.53
CXCL1-202ENST00000509101 MST1RQ04912 1400 aa24.59■■□□□ 1.53
CXCL1-202ENST00000509101 NUTM2BA6NNL0 878 aaPredicted RBP24.58■■□□□ 1.53
CXCL1-202ENST00000509101 NUTM2EB1AL46 878 aaPredicted RBP24.58■■□□□ 1.53
CXCL1-202ENST00000509101 ITGAEP38570 1179 aa24.58■■□□□ 1.53
CXCL1-202ENST00000509101 NUTM2AQ8IVF1 878 aaPredicted RBP24.58■■□□□ 1.53
CXCL1-202ENST00000509101 UPF1Q92900 1129 aaKnown RBP eCLIP24.56■■□□□ 1.52
CXCL1-202ENST00000509101 CLTCL1P53675 1640 aa24.56■■□□□ 1.52
CXCL1-202ENST00000509101 SETD5Q9C0A6 1442 aa24.54■■□□□ 1.52
CXCL1-202ENST00000509101 NEXMIFQ5QGS0 1516 aa24.54■■□□□ 1.52
CXCL1-202ENST00000509101 METP08581 1390 aa24.54■■□□□ 1.52
CXCL1-202ENST00000509101 ZNF326Q5BKZ1 582 aaKnown RBP24.53■■□□□ 1.52
CXCL1-202ENST00000509101 KIF1BO60333 1816 aa24.53■■□□□ 1.52
CXCL1-202ENST00000509101 ADGRL3Q9HAR2 1447 aa24.52■■□□□ 1.52
CXCL1-202ENST00000509101 CDK12Q9NYV4 1490 aaPredicted RBP24.52■■□□□ 1.52
CXCL1-202ENST00000509101 RXRBP28702 533 aa24.52■■□□□ 1.52
CXCL1-202ENST00000509101 AFF2P51816 1311 aa24.52■■□□□ 1.52
CXCL1-202ENST00000509101 DDX17Q92841 729 aaKnown RBP24.46■■□□□ 1.51
CXCL1-202ENST00000509101 PNPLA6Q8IY17 1366 aa24.45■■□□□ 1.5
CXCL1-202ENST00000509101 LRRC59Q96AG4 307 aaKnown RBP24.44■■□□□ 1.5
CXCL1-202ENST00000509101 RGS12O14924 1447 aa24.44■■□□□ 1.5
CXCL1-202ENST00000509101 LAMC1P11047 1609 aa24.43■■□□□ 1.5
CXCL1-202ENST00000509101 C8orf37Q96NL8 207 aa24.43■■□□□ 1.5
CXCL1-202ENST00000509101 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
CXCL1-202ENST00000509101 C1orf167Q5SNV9 1468 aa24.4■■□□□ 1.5
CXCL1-202ENST00000509101 PTCH1Q13635 1447 aa24.39■■□□□ 1.5
CXCL1-202ENST00000509101 QTRT2Q9H974 415 aaKnown RBP24.36■■□□□ 1.49
CXCL1-202ENST00000509101 PPLO60437 1756 aa24.36■■□□□ 1.49
CXCL1-202ENST00000509101 RBM6P78332 1123 aaKnown RBP24.35■■□□□ 1.49
CXCL1-202ENST00000509101 ADAMTS2O95450 1211 aa24.34■■□□□ 1.49
CXCL1-202ENST00000509101 ROBO2Q9HCK4 1378 aa24.33■■□□□ 1.49
CXCL1-202ENST00000509101 NAIPQ13075 1403 aa24.32■■□□□ 1.48
CXCL1-202ENST00000509101 COL22A1Q8NFW1 1626 aaPredicted RBP24.32■■□□□ 1.48
CXCL1-202ENST00000509101 NGLY1Q96IV0 654 aa24.31■■□□□ 1.48
CXCL1-202ENST00000509101 PRAG1Q86YV5 1406 aa24.3■■□□□ 1.48
CXCL1-202ENST00000509101 ORAI2Q96SN7 254 aa24.29■■□□□ 1.48
CXCL1-202ENST00000509101 MARF1Q9Y4F3 1742 aaKnown RBP24.28■■□□□ 1.48
CXCL1-202ENST00000509101 SOS2Q07890 1332 aaPredicted RBP24.28■■□□□ 1.48
CXCL1-202ENST00000509101 RRBP1Q9P2E9 1410 aaKnown RBP24.27■■□□□ 1.48
CXCL1-202ENST00000509101 CDC42BPGQ6DT37 1551 aa24.26■■□□□ 1.47
CXCL1-202ENST00000509101 VGFO15240 615 aaPredicted RBP24.26■■□□□ 1.47
CXCL1-202ENST00000509101 HFM1A2PYH4 1435 aa24.25■■□□□ 1.47
CXCL1-202ENST00000509101 USP21Q9UK80 565 aa24.24■■□□□ 1.47
CXCL1-202ENST00000509101 ATAD2Q6PL18 1390 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms