RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 KIF1BO60333 1816 aa13.42□□□□□ -0.26
NUP54-207ENST00000508583 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.42□□□□□ -0.26
NUP54-207ENST00000508583 CLTCL1P53675 1640 aa13.42□□□□□ -0.26
NUP54-207ENST00000508583 MED14O60244 1454 aa13.41□□□□□ -0.26
NUP54-207ENST00000508583 TXNDC2Q86VQ3 553 aa13.4□□□□□ -0.26
NUP54-207ENST00000508583 IQGAP1P46940 1657 aa13.4□□□□□ -0.26
NUP54-207ENST00000508583 PPP1R15AO75807 674 aaPredicted RBP13.39□□□□□ -0.27
NUP54-207ENST00000508583 NPHP4O75161 1426 aaPredicted RBP13.39□□□□□ -0.27
NUP54-207ENST00000508583 ZNF326Q5BKZ1 582 aaKnown RBP13.38□□□□□ -0.27
NUP54-207ENST00000508583 RIMS2Q9UQ26 1411 aa13.38□□□□□ -0.27
NUP54-207ENST00000508583 RPGRIP1LQ68CZ1 1315 aa13.37□□□□□ -0.27
NUP54-207ENST00000508583 ZFYVE9O95405 1425 aa13.36□□□□□ -0.27
NUP54-207ENST00000508583 ANKRD30BQ9BXX2 1392 aa13.35□□□□□ -0.27
NUP54-207ENST00000508583 PLEKHG1Q9ULL1 1385 aa13.34□□□□□ -0.27
NUP54-207ENST00000508583 LTKP29376 864 aa13.34□□□□□ -0.27
NUP54-207ENST00000508583 BCANQ96GW7 911 aa13.34□□□□□ -0.27
NUP54-207ENST00000508583 VGFO15240 615 aaPredicted RBP13.33□□□□□ -0.28
NUP54-207ENST00000508583 LTBP4Q8N2S1 1624 aa13.32□□□□□ -0.28
NUP54-207ENST00000508583 PCGF6Q9BYE7 350 aa13.32□□□□□ -0.28
NUP54-207ENST00000508583 DIP2AQ14689 1571 aa13.31□□□□□ -0.28
NUP54-207ENST00000508583 ZNF335Q9H4Z2 1342 aaPredicted RBP13.31□□□□□ -0.28
NUP54-207ENST00000508583 SPATA31E1Q6ZUB1 1445 aa13.3□□□□□ -0.28
NUP54-207ENST00000508583 NEXMIFQ5QGS0 1516 aa13.3□□□□□ -0.28
NUP54-207ENST00000508583 STAC3Q96MF2 364 aa13.3□□□□□ -0.28
NUP54-207ENST00000508583 STRCP1A6NGW2 1772 aa13.3□□□□□ -0.28
NUP54-207ENST00000508583 NUTM2DQ5VT03 806 aaPredicted RBP13.29□□□□□ -0.28
NUP54-207ENST00000508583 PPLO60437 1756 aa13.28□□□□□ -0.28
NUP54-207ENST00000508583 RGL3Q3MIN7 710 aa13.28□□□□□ -0.28
NUP54-207ENST00000508583 DHX57Q6P158 1386 aaKnown RBP13.28□□□□□ -0.28
NUP54-207ENST00000508583 CPS1P31327 1500 aa13.28□□□□□ -0.28
NUP54-207ENST00000508583 SETBP1Q9Y6X0 1596 aa13.28□□□□□ -0.28
NUP54-207ENST00000508583 TBX22Q9Y458 520 aa13.27□□□□□ -0.29
NUP54-207ENST00000508583 PIK3R4Q99570 1358 aa13.27□□□□□ -0.29
NUP54-207ENST00000508583 MAPK8IP2Q13387 824 aaPredicted RBP13.26□□□□□ -0.29
NUP54-207ENST00000508583 IFT172Q9UG01 1749 aa13.26□□□□□ -0.29
NUP54-207ENST00000508583 NRXN3Q9Y4C0 1643 aa13.26□□□□□ -0.29
NUP54-207ENST00000508583 MYOM2P54296 1465 aa13.24□□□□□ -0.29
NUP54-207ENST00000508583 IQSEC2Q5JU85 1478 aa13.24□□□□□ -0.29
NUP54-207ENST00000508583 CERKQ8TCT0 537 aa13.24□□□□□ -0.29
NUP54-207ENST00000508583 SLC26A8Q96RN1 970 aa13.24□□□□□ -0.29
NUP54-207ENST00000508583 ADAMTS13Q76LX8 1427 aa13.23□□□□□ -0.29
NUP54-207ENST00000508583 NKTRP30414 1462 aaKnown RBP13.23□□□□□ -0.29
NUP54-207ENST00000508583 CLSPNQ9HAW4 1339 aa13.22□□□□□ -0.29
NUP54-207ENST00000508583 KCNA6P17658 529 aa13.22□□□□□ -0.29
NUP54-207ENST00000508583 NWD1Q149M9 1564 aa13.22□□□□□ -0.29
NUP54-207ENST00000508583 PIK3C2GO75747 1445 aa13.21□□□□□ -0.3
NUP54-207ENST00000508583 LAMC1P11047 1609 aa13.21□□□□□ -0.3
NUP54-207ENST00000508583 SETD1AO15047 1707 aaKnown RBP13.2□□□□□ -0.3
NUP54-207ENST00000508583 DCAF11Q8TEB1 546 aa13.2□□□□□ -0.3
NUP54-207ENST00000508583 CHD2O14647 1828 aaKnown RBP13.2□□□□□ -0.3
NUP54-207ENST00000508583 NRXN1Q9ULB1 1477 aa13.19□□□□□ -0.3
NUP54-207ENST00000508583 XIRP1Q702N8 1843 aaKnown RBP13.19□□□□□ -0.3
NUP54-207ENST00000508583 ALKQ9UM73 1620 aa13.19□□□□□ -0.3
NUP54-207ENST00000508583 LRRC7Q96NW7 1537 aa13.18□□□□□ -0.3
NUP54-207ENST00000508583 ADGRF5Q8IZF2 1346 aa13.18□□□□□ -0.3
NUP54-207ENST00000508583 XRN1Q8IZH2 1706 aaKnown RBP13.16□□□□□ -0.3
NUP54-207ENST00000508583 NCOA3Q9Y6Q9 1424 aa13.16□□□□□ -0.3
NUP54-207ENST00000508583 NEUROD1Q13562 356 aa13.16□□□□□ -0.3
NUP54-207ENST00000508583 TONSLQ96HA7 1378 aa13.16□□□□□ -0.3
NUP54-207ENST00000508583 PROSER2Q86WR7 435 aaPredicted RBP13.15□□□□□ -0.3
NUP54-207ENST00000508583 AMOTL2Q9Y2J4 779 aa13.15□□□□□ -0.3
NUP54-207ENST00000508583 KDM2AQ9Y2K7 1162 aa13.15□□□□□ -0.3
NUP54-207ENST00000508583 METP08581 1390 aa13.15□□□□□ -0.3
NUP54-207ENST00000508583 PTPRUQ92729 1446 aa13.14□□□□□ -0.31
NUP54-207ENST00000508583 ILDR1Q86SU0 546 aaPredicted RBP13.14□□□□□ -0.31
NUP54-207ENST00000508583 CCER1Q8TC90 406 aaPredicted RBP13.14□□□□□ -0.31
NUP54-207ENST00000508583 SIN3AQ96ST3 1273 aa13.14□□□□□ -0.31
NUP54-207ENST00000508583 C14orf93Q9H972 538 aaKnown RBP13.14□□□□□ -0.31
NUP54-207ENST00000508583 PTCH1Q13635 1447 aa13.13□□□□□ -0.31
NUP54-207ENST00000508583 PRAG1Q86YV5 1406 aa13.13□□□□□ -0.31
NUP54-207ENST00000508583 FBXO41Q8TF61 875 aa13.13□□□□□ -0.31
NUP54-207ENST00000508583 MSH6P52701 1360 aa13.12□□□□□ -0.31
NUP54-207ENST00000508583 TMEM94Q12767 1356 aa13.12□□□□□ -0.31
NUP54-207ENST00000508583 L3MBTL2Q969R5 705 aa13.12□□□□□ -0.31
NUP54-207ENST00000508583 RBM33Q96EV2 1170 aaKnown RBP13.12□□□□□ -0.31
NUP54-207ENST00000508583 KIAA1210Q9ULL0 1709 aa13.11□□□□□ -0.31
NUP54-207ENST00000508583 LRPPRCP42704 1394 aaKnown RBP13.11□□□□□ -0.31
NUP54-207ENST00000508583 TOM1O60784 492 aa13.11□□□□□ -0.31
NUP54-207ENST00000508583 C14orf37Q86TY3 774 aa13.11□□□□□ -0.31
NUP54-207ENST00000508583 TIMELESSQ9UNS1 1208 aa13.11□□□□□ -0.31
NUP54-207ENST00000508583 ASXL1Q8IXJ9 1541 aa13.11□□□□□ -0.31
NUP54-207ENST00000508583 ABCC11Q96J66 1382 aa13.1□□□□□ -0.31
NUP54-207ENST00000508583 CFAP70Q5T0N1 1121 aa13.1□□□□□ -0.31
NUP54-207ENST00000508583 TECPR2O15040 1411 aa13.1□□□□□ -0.31
NUP54-207ENST00000508583 KNDC1Q76NI1 1749 aa13.1□□□□□ -0.31
NUP54-207ENST00000508583 YTHDC2Q9H6S0 1430 aaKnown RBP13.09□□□□□ -0.31
NUP54-207ENST00000508583 DCCP43146 1447 aa13.08□□□□□ -0.32
NUP54-207ENST00000508583 UBAP1LF5GYI3 381 aa13.08□□□□□ -0.32
NUP54-207ENST00000508583 NALCNQ8IZF0 1738 aa13.08□□□□□ -0.32
NUP54-207ENST00000508583 FAM135BQ49AJ0 1406 aa13.07□□□□□ -0.32
NUP54-207ENST00000508583 CADPS2Q86UW7 1296 aa13.07□□□□□ -0.32
NUP54-207ENST00000508583 SIRT1Q96EB6 747 aa13.07□□□□□ -0.32
NUP54-207ENST00000508583 C19orf44Q9H6X5 657 aa13.07□□□□□ -0.32
NUP54-207ENST00000508583 ATF3P18847 181 aa13.06□□□□□ -0.32
NUP54-207ENST00000508583 TMEM132EQ6IEE7 984 aa13.06□□□□□ -0.32
NUP54-207ENST00000508583 STK26Q9P289 416 aa13.06□□□□□ -0.32
NUP54-207ENST00000508583 DLC1Q96QB1 1528 aa13.06□□□□□ -0.32
NUP54-207ENST00000508583 ADGRB1O14514 1584 aa13.06□□□□□ -0.32
NUP54-207ENST00000508583 ROBO2Q9HCK4 1378 aa13.06□□□□□ -0.32
NUP54-207ENST00000508583 ADGRL3Q9HAR2 1447 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms