RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 POTEEQ6S8J3 1075 aa8.25□□□□□ -1.09
HMGB1P28-201ENST00000507778 SULF1Q8IWU6 871 aa8.25□□□□□ -1.09
HMGB1P28-201ENST00000507778 TMEM134Q9H6X4 195 aa8.25□□□□□ -1.09
HMGB1P28-201ENST00000507778 RABGEF1Q9UJ41 708 aa8.25□□□□□ -1.09
HMGB1P28-201ENST00000507778 DIXDC1Q155Q3 683 aa8.24□□□□□ -1.09
HMGB1P28-201ENST00000507778 DMRTA1Q5VZB9 504 aa8.24□□□□□ -1.09
HMGB1P28-201ENST00000507778 DDX11L8A8MPP1 907 aa8.23□□□□□ -1.09
HMGB1P28-201ENST00000507778 CD46P15529 392 aa8.22□□□□□ -1.09
HMGB1P28-201ENST00000507778 TBC1D2Q9BYX2 928 aa8.22□□□□□ -1.09
HMGB1P28-201ENST00000507778 POLR3EQ9NVU0 708 aa8.22□□□□□ -1.09
HMGB1P28-201ENST00000507778 ATP1B4Q9UN42 357 aaPredicted RBP8.22□□□□□ -1.09
HMGB1P28-201ENST00000507778 POTEB3A0JP26 581 aa8.21□□□□□ -1.1
HMGB1P28-201ENST00000507778 HDGFP51858 240 aaKnown RBP8.21□□□□□ -1.1
HMGB1P28-201ENST00000507778 POTEBQ6S5H4 581 aa8.21□□□□□ -1.1
HMGB1P28-201ENST00000507778 VPS9D1Q9Y2B5 631 aa8.21□□□□□ -1.1
HMGB1P28-201ENST00000507778 RSPH4AQ5TD94 716 aa8.2□□□□□ -1.1
HMGB1P28-201ENST00000507778 MYSM1Q5VVJ2 828 aa8.2□□□□□ -1.1
HMGB1P28-201ENST00000507778 SPNS2Q8IVW8 549 aa8.2□□□□□ -1.1
HMGB1P28-201ENST00000507778 SEPT9Q9UHD8 586 aaPredicted RBP8.2□□□□□ -1.1
HMGB1P28-201ENST00000507778 NUTM1Q86Y26 1132 aa8.19□□□□□ -1.1
HMGB1P28-201ENST00000507778 RDH13Q8NBN7 331 aa8.19□□□□□ -1.1
HMGB1P28-201ENST00000507778 PROCA1Q8NCQ7 364 aaPredicted RBP8.19□□□□□ -1.1
HMGB1P28-201ENST00000507778 FAM98CQ17RN3 349 aaKnown RBP8.18□□□□□ -1.1
HMGB1P28-201ENST00000507778 SWT1Q5T5J6 900 aaKnown RBP8.18□□□□□ -1.1
HMGB1P28-201ENST00000507778 SPIRE2Q8WWL2 714 aa8.18□□□□□ -1.1
HMGB1P28-201ENST00000507778 TK2O00142 265 aa8.17□□□□□ -1.1
HMGB1P28-201ENST00000507778 CLK2P49760 499 aaKnown RBP8.17□□□□□ -1.1
HMGB1P28-201ENST00000507778 LAPTM4BQ86VI4 370 aa8.17□□□□□ -1.1
HMGB1P28-201ENST00000507778 NBPF3Q9H094 633 aa8.17□□□□□ -1.1
HMGB1P28-201ENST00000507778 SLC4A3P48751 1232 aa8.16□□□□□ -1.1
HMGB1P28-201ENST00000507778 FLIIQ13045 1269 aa8.16□□□□□ -1.1
HMGB1P28-201ENST00000507778 RIC3Q7Z5B4 369 aa8.16□□□□□ -1.1
HMGB1P28-201ENST00000507778 BHMG1C9JSJ3 638 aaPredicted RBP8.15□□□□□ -1.1
HMGB1P28-201ENST00000507778 MMRN1Q13201 1228 aa8.15□□□□□ -1.1
HMGB1P28-201ENST00000507778 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.15□□□□□ -1.1
HMGB1P28-201ENST00000507778 KRTAP3-3Q9BYR6 98 aa8.15□□□□□ -1.1
HMGB1P28-201ENST00000507778 KRTAP3-2Q9BYR7 98 aa8.15□□□□□ -1.1
HMGB1P28-201ENST00000507778 SPTLC1O15269 473 aa8.14□□□□□ -1.11
HMGB1P28-201ENST00000507778 KDM4AO75164 1064 aa8.14□□□□□ -1.11
HMGB1P28-201ENST00000507778 GCGRP47871 477 aa8.14□□□□□ -1.11
HMGB1P28-201ENST00000507778 LSM11P83369 360 aaKnown RBP eCLIP8.14□□□□□ -1.11
HMGB1P28-201ENST00000507778 SLF2Q8IX21 1173 aa8.14□□□□□ -1.11
HMGB1P28-201ENST00000507778 MRPL50Q8N5N7 158 aaKnown RBP8.14□□□□□ -1.11
HMGB1P28-201ENST00000507778 SLC10A3P09131 477 aa8.13□□□□□ -1.11
HMGB1P28-201ENST00000507778 ADGRD1Q6QNK2 874 aa8.13□□□□□ -1.11
HMGB1P28-201ENST00000507778 SAMD7Q7Z3H4 446 aa8.13□□□□□ -1.11
HMGB1P28-201ENST00000507778 LIMD1Q9UGP4 676 aa8.13□□□□□ -1.11
HMGB1P28-201ENST00000507778 MOXD2PA6NHM9 499 aa8.12□□□□□ -1.11
HMGB1P28-201ENST00000507778 USP46P62068 366 aa8.12□□□□□ -1.11
HMGB1P28-201ENST00000507778 TUSC1Q2TAM9 212 aa8.12□□□□□ -1.11
HMGB1P28-201ENST00000507778 RSBN1LQ6PCB5 846 aaPredicted RBP8.12□□□□□ -1.11
HMGB1P28-201ENST00000507778 ZFRQ96KR1 1074 aaKnown RBP8.12□□□□□ -1.11
HMGB1P28-201ENST00000507778 ZMYND15Q9H091 742 aa8.12□□□□□ -1.11
HMGB1P28-201ENST00000507778 NDUFV2P19404 249 aa8.11□□□□□ -1.11
HMGB1P28-201ENST00000507778 GJA5P36382 358 aa8.11□□□□□ -1.11
HMGB1P28-201ENST00000507778 CSPP1Q1MSJ5 1256 aa8.1□□□□□ -1.11
HMGB1P28-201ENST00000507778 ANKRD13DQ6ZTN6 518 aa8.1□□□□□ -1.11
HMGB1P28-201ENST00000507778 STAC3Q96MF2 364 aa8.1□□□□□ -1.11
HMGB1P28-201ENST00000507778 RNF40O75150 1001 aa8.09□□□□□ -1.11
HMGB1P28-201ENST00000507778 PPP2R2DQ66LE6 453 aa8.09□□□□□ -1.11
HMGB1P28-201ENST00000507778 HOXA2O43364 376 aa8.08□□□□□ -1.12
HMGB1P28-201ENST00000507778 HRO43593 1189 aa8.08□□□□□ -1.12
HMGB1P28-201ENST00000507778 RFC5P40937 340 aa8.08□□□□□ -1.12
HMGB1P28-201ENST00000507778 LRCH3Q96II8 777 aa8.08□□□□□ -1.12
HMGB1P28-201ENST00000507778 GOLGA8CPA6NN73 597 aa8.07□□□□□ -1.12
HMGB1P28-201ENST00000507778 FDX1P10109 184 aa8.07□□□□□ -1.12
HMGB1P28-201ENST00000507778 TMEM259Q4ZIN3 620 aa8.07□□□□□ -1.12
HMGB1P28-201ENST00000507778 BANK1Q8NDB2 785 aa8.07□□□□□ -1.12
HMGB1P28-201ENST00000507778 NECTIN2Q92692 538 aa8.07□□□□□ -1.12
HMGB1P28-201ENST00000507778 PCDHB15Q9Y5E8 787 aa8.07□□□□□ -1.12
HMGB1P28-201ENST00000507778 SUPT5HO00267 1087 aaKnown RBP8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 LILRB3O75022 631 aa8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 CFHP08603 1231 aa8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 QPCTQ16769 361 aa8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 GRIPAP1Q4V328 841 aa8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 FBXO31Q5XUX0 539 aaPredicted RBP8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.06□□□□□ -1.12
HMGB1P28-201ENST00000507778 NUTM2BA6NNL0 878 aaPredicted RBP8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 NUTM2EB1AL46 878 aaPredicted RBP8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 MCM6Q14566 821 aa8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 KMT5BQ4FZB7 885 aa8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 NUTM2DQ5VT03 806 aaPredicted RBP8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 PRPF38BQ5VTL8 546 aaKnown RBP8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 NUTM2AQ8IVF1 878 aaPredicted RBP8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 ANKK1Q8NFD2 765 aa8.05□□□□□ -1.12
HMGB1P28-201ENST00000507778 UBTFP17480 764 aaKnown RBP8.04□□□□□ -1.12
HMGB1P28-201ENST00000507778 FUT2Q10981 343 aa8.04□□□□□ -1.12
HMGB1P28-201ENST00000507778 ZBTB3Q9H5J0 574 aa8.04□□□□□ -1.12
HMGB1P28-201ENST00000507778 ATP6V1AP38606 617 aa8.03□□□□□ -1.12
HMGB1P28-201ENST00000507778 CABLES1Q8TDN4 633 aa8.03□□□□□ -1.12
HMGB1P28-201ENST00000507778 HLA-CQ95604 372 aa8.03□□□□□ -1.12
HMGB1P28-201ENST00000507778 PCDHGC3Q9UN70 934 aa8.03□□□□□ -1.12
HMGB1P28-201ENST00000507778 SPDYE5A6NIY4 337 aa8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 HRCP23327 699 aa8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 PPP4CP60510 307 aa8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 GUCA2AQ02747 115 aa8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 RTL5Q5HYW3 569 aaPredicted RBP8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 PRR14Q9BWN1 585 aa8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 MYT1LQ9UL68 1186 aa8.02□□□□□ -1.13
HMGB1P28-201ENST00000507778 SOWAHBA6NEL2 793 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms