RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 SENP3Q9H4L4 574 aaPredicted RBP17.74■□□□□ 0.43
HMGCS1-204ENST00000507293 ZFYVE9O95405 1425 aa17.73■□□□□ 0.43
HMGCS1-204ENST00000507293 PPARGC1BQ86YN6 1023 aaKnown RBP17.73■□□□□ 0.43
HMGCS1-204ENST00000507293 ITGAEP38570 1179 aa17.72■□□□□ 0.43
HMGCS1-204ENST00000507293 RIMS2Q9UQ26 1411 aa17.72■□□□□ 0.43
HMGCS1-204ENST00000507293 NKTRP30414 1462 aaKnown RBP17.71■□□□□ 0.43
HMGCS1-204ENST00000507293 TMEM94Q12767 1356 aa17.71■□□□□ 0.43
HMGCS1-204ENST00000507293 CHD2O14647 1828 aaKnown RBP17.71■□□□□ 0.43
HMGCS1-204ENST00000507293 KCNA6P17658 529 aa17.71■□□□□ 0.43
HMGCS1-204ENST00000507293 BCANQ96GW7 911 aa17.7■□□□□ 0.42
HMGCS1-204ENST00000507293 PLEKHG1Q9ULL1 1385 aa17.69■□□□□ 0.42
HMGCS1-204ENST00000507293 SPHKAPQ2M3C7 1700 aa17.68■□□□□ 0.42
HMGCS1-204ENST00000507293 ROBO1Q9Y6N7 1651 aa17.67■□□□□ 0.42
HMGCS1-204ENST00000507293 NUP155O75694 1391 aa17.67■□□□□ 0.42
HMGCS1-204ENST00000507293 PPP1R15AO75807 674 aaPredicted RBP17.67■□□□□ 0.42
HMGCS1-204ENST00000507293 CHGAP10645 457 aaKnown RBP17.67■□□□□ 0.42
HMGCS1-204ENST00000507293 PROSER2Q86WR7 435 aaPredicted RBP17.67■□□□□ 0.42
HMGCS1-204ENST00000507293 RBM33Q96EV2 1170 aaKnown RBP17.66■□□□□ 0.42
HMGCS1-204ENST00000507293 HDGFP51858 240 aaKnown RBP17.64■□□□□ 0.41
HMGCS1-204ENST00000507293 DIP2AQ14689 1571 aa17.64■□□□□ 0.41
HMGCS1-204ENST00000507293 FAM135BQ49AJ0 1406 aa17.64■□□□□ 0.41
HMGCS1-204ENST00000507293 PHF23Q9BUL5 403 aaPredicted RBP17.63■□□□□ 0.41
HMGCS1-204ENST00000507293 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.62■□□□□ 0.41
HMGCS1-204ENST00000507293 ADAMTS13Q76LX8 1427 aa17.62■□□□□ 0.41
HMGCS1-204ENST00000507293 RRBP1Q9P2E9 1410 aaKnown RBP17.62■□□□□ 0.41
HMGCS1-204ENST00000507293 NUTM2DQ5VT03 806 aaPredicted RBP17.61■□□□□ 0.41
HMGCS1-204ENST00000507293 MSH6P52701 1360 aa17.61■□□□□ 0.41
HMGCS1-204ENST00000507293 TBX22Q9Y458 520 aa17.59■□□□□ 0.41
HMGCS1-204ENST00000507293 PHLPP1O60346 1717 aa17.58■□□□□ 0.41
HMGCS1-204ENST00000507293 TRPM2O94759 1503 aa17.58■□□□□ 0.41
HMGCS1-204ENST00000507293 CLTCL1P53675 1640 aa17.58■□□□□ 0.4
HMGCS1-204ENST00000507293 NRXN3Q9Y4C0 1643 aa17.58■□□□□ 0.4
HMGCS1-204ENST00000507293 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.56■□□□□ 0.4
HMGCS1-204ENST00000507293 PIK3R4Q99570 1358 aa17.55■□□□□ 0.4
HMGCS1-204ENST00000507293 KIF1BO60333 1816 aa17.55■□□□□ 0.4
HMGCS1-204ENST00000507293 NAIPQ13075 1403 aa17.55■□□□□ 0.4
HMGCS1-204ENST00000507293 SETBP1Q9Y6X0 1596 aa17.54■□□□□ 0.4
HMGCS1-204ENST00000507293 NCOA3Q9Y6Q9 1424 aa17.54■□□□□ 0.4
HMGCS1-204ENST00000507293 XRN1Q8IZH2 1706 aaKnown RBP17.53■□□□□ 0.4
HMGCS1-204ENST00000507293 SLAIN2Q9P270 581 aa17.52■□□□□ 0.4
HMGCS1-204ENST00000507293 PTPRUQ92729 1446 aa17.52■□□□□ 0.4
HMGCS1-204ENST00000507293 C14orf37Q86TY3 774 aa17.51■□□□□ 0.39
HMGCS1-204ENST00000507293 NEXMIFQ5QGS0 1516 aa17.51■□□□□ 0.39
HMGCS1-204ENST00000507293 COL16A1Q07092 1604 aaPredicted RBP17.5■□□□□ 0.39
HMGCS1-204ENST00000507293 ZNF326Q5BKZ1 582 aaKnown RBP17.49■□□□□ 0.39
HMGCS1-204ENST00000507293 RGS17Q9UGC6 210 aaPredicted RBP17.48■□□□□ 0.39
HMGCS1-204ENST00000507293 AMOTL2Q9Y2J4 779 aa17.48■□□□□ 0.39
HMGCS1-204ENST00000507293 HFM1A2PYH4 1435 aa17.47■□□□□ 0.39
HMGCS1-204ENST00000507293 AHDC1Q5TGY3 1603 aaPredicted RBP17.47■□□□□ 0.39
HMGCS1-204ENST00000507293 CADPS2Q86UW7 1296 aa17.45■□□□□ 0.38
HMGCS1-204ENST00000507293 C19orf44Q9H6X5 657 aa17.45■□□□□ 0.38
HMGCS1-204ENST00000507293 SETD1AO15047 1707 aaKnown RBP17.44■□□□□ 0.38
HMGCS1-204ENST00000507293 METP08581 1390 aa17.44■□□□□ 0.38
HMGCS1-204ENST00000507293 JCADQ9P266 1359 aa17.44■□□□□ 0.38
HMGCS1-204ENST00000507293 ATF3P18847 181 aa17.44■□□□□ 0.38
HMGCS1-204ENST00000507293 TRIM52Q96A61 297 aa17.44■□□□□ 0.38
HMGCS1-204ENST00000507293 NALCNQ8IZF0 1738 aa17.44■□□□□ 0.38
HMGCS1-204ENST00000507293 SHPRHQ149N8 1683 aa17.42■□□□□ 0.38
HMGCS1-204ENST00000507293 DCCP43146 1447 aa17.42■□□□□ 0.38
HMGCS1-204ENST00000507293 PPLO60437 1756 aa17.42■□□□□ 0.38
HMGCS1-204ENST00000507293 NHSL1Q5SYE7 1610 aa17.39■□□□□ 0.38
HMGCS1-204ENST00000507293 ASXL1Q8IXJ9 1541 aa17.39■□□□□ 0.37
HMGCS1-204ENST00000507293 POTEAQ6S8J7 498 aa17.39■□□□□ 0.37
HMGCS1-204ENST00000507293 LRP6O75581 1613 aa17.39■□□□□ 0.37
HMGCS1-204ENST00000507293 MST1RQ04912 1400 aa17.38■□□□□ 0.37
HMGCS1-204ENST00000507293 SLC4A1APQ9BWU0 796 aaKnown RBP17.38■□□□□ 0.37
HMGCS1-204ENST00000507293 ADGRL3Q9HAR2 1447 aa17.38■□□□□ 0.37
HMGCS1-204ENST00000507293 BRINP3Q76B58 766 aa17.37■□□□□ 0.37
HMGCS1-204ENST00000507293 SPATA31A6Q5VVP1 1343 aa17.35■□□□□ 0.37
HMGCS1-204ENST00000507293 IFT172Q9UG01 1749 aa17.33■□□□□ 0.37
HMGCS1-204ENST00000507293 PTCH1Q13635 1447 aa17.33■□□□□ 0.36
HMGCS1-204ENST00000507293 VGFO15240 615 aaPredicted RBP17.33■□□□□ 0.36
HMGCS1-204ENST00000507293 RPGRIP1LQ68CZ1 1315 aa17.32■□□□□ 0.36
HMGCS1-204ENST00000507293 FOXD1Q16676 465 aa17.32■□□□□ 0.36
HMGCS1-204ENST00000507293 MEX3CQ5U5Q3 659 aaKnown RBP17.3■□□□□ 0.36
HMGCS1-204ENST00000507293 PRAG1Q86YV5 1406 aa17.3■□□□□ 0.36
HMGCS1-204ENST00000507293 SETD5Q9C0A6 1442 aa17.3■□□□□ 0.36
HMGCS1-204ENST00000507293 ROBO2Q9HCK4 1378 aa17.29■□□□□ 0.36
HMGCS1-204ENST00000507293 CCDC144AA2RUR9 1427 aa17.29■□□□□ 0.36
HMGCS1-204ENST00000507293 LAMC1P11047 1609 aa17.28■□□□□ 0.36
HMGCS1-204ENST00000507293 C1orf167Q5SNV9 1468 aa17.27■□□□□ 0.36
HMGCS1-204ENST00000507293 NUTM2BA6NNL0 878 aaPredicted RBP17.26■□□□□ 0.35
HMGCS1-204ENST00000507293 NUTM2EB1AL46 878 aaPredicted RBP17.26■□□□□ 0.35
HMGCS1-204ENST00000507293 NUTM2AQ8IVF1 878 aaPredicted RBP17.26■□□□□ 0.35
HMGCS1-204ENST00000507293 DDX17Q92841 729 aaKnown RBP17.26■□□□□ 0.35
HMGCS1-204ENST00000507293 SPATA31E1Q6ZUB1 1445 aa17.26■□□□□ 0.35
HMGCS1-204ENST00000507293 MPHOSPH9Q99550 1183 aa17.25■□□□□ 0.35
HMGCS1-204ENST00000507293 KNDC1Q76NI1 1749 aa17.24■□□□□ 0.35
HMGCS1-204ENST00000507293 CDC42BPGQ6DT37 1551 aa17.23■□□□□ 0.35
HMGCS1-204ENST00000507293 ADGRF5Q8IZF2 1346 aa17.23■□□□□ 0.35
HMGCS1-204ENST00000507293 ZNF772Q68DY9 489 aaPredicted RBP17.23■□□□□ 0.35
HMGCS1-204ENST00000507293 LRRC59Q96AG4 307 aaKnown RBP17.23■□□□□ 0.35
HMGCS1-204ENST00000507293 PNPLA6Q8IY17 1366 aa17.23■□□□□ 0.35
HMGCS1-204ENST00000507293 RGL3Q3MIN7 710 aa17.22■□□□□ 0.35
HMGCS1-204ENST00000507293 ANKRD30BQ9BXX2 1392 aa17.21■□□□□ 0.35
HMGCS1-204ENST00000507293 ORAI2Q96SN7 254 aa17.19■□□□□ 0.34
HMGCS1-204ENST00000507293 PIK3C2GO75747 1445 aa17.19■□□□□ 0.34
HMGCS1-204ENST00000507293 AFF2P51816 1311 aa17.19■□□□□ 0.34
HMGCS1-204ENST00000507293 TECPR2O15040 1411 aa17.18■□□□□ 0.34
HMGCS1-204ENST00000507293 LRPPRCP42704 1394 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms