RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 RIMS2Q9UQ26 1411 aa27.15■■□□□ 1.94
SQSTM1-209ENST00000504627 KCNA6P17658 529 aa27.14■■□□□ 1.94
SQSTM1-209ENST00000504627 HSPA1LP34931 641 aa27.14■■□□□ 1.94
SQSTM1-209ENST00000504627 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.13■■□□□ 1.93
SQSTM1-209ENST00000504627 TMEM131LA2VDJ0 1609 aa27.12■■□□□ 1.93
SQSTM1-209ENST00000504627 ZFYVE9O95405 1425 aa27.11■■□□□ 1.93
SQSTM1-209ENST00000504627 MYO5BQ9ULV0 1848 aa27.11■■□□□ 1.93
SQSTM1-209ENST00000504627 PLEKHG1Q9ULL1 1385 aa27.09■■□□□ 1.93
SQSTM1-209ENST00000504627 NAIPQ13075 1403 aa27.08■■□□□ 1.93
SQSTM1-209ENST00000504627 NUTM2DQ5VT03 806 aaPredicted RBP27.08■■□□□ 1.93
SQSTM1-209ENST00000504627 PROSER2Q86WR7 435 aaPredicted RBP27.08■■□□□ 1.93
SQSTM1-209ENST00000504627 ALKQ9UM73 1620 aa27.06■■□□□ 1.92
SQSTM1-209ENST00000504627 TRIM52Q96A61 297 aa27.05■■□□□ 1.92
SQSTM1-209ENST00000504627 TMEM94Q12767 1356 aa27.05■■□□□ 1.92
SQSTM1-209ENST00000504627 RBM33Q96EV2 1170 aaKnown RBP27.02■■□□□ 1.92
SQSTM1-209ENST00000504627 TBX22Q9Y458 520 aa27.01■■□□□ 1.91
SQSTM1-209ENST00000504627 HFM1A2PYH4 1435 aa27■■□□□ 1.91
SQSTM1-209ENST00000504627 ZNF326Q5BKZ1 582 aaKnown RBP27■■□□□ 1.91
SQSTM1-209ENST00000504627 XIRP1Q702N8 1843 aaKnown RBP27■■□□□ 1.91
SQSTM1-209ENST00000504627 NKTRP30414 1462 aaKnown RBP26.99■■□□□ 1.91
SQSTM1-209ENST00000504627 SPHKAPQ2M3C7 1700 aa26.99■■□□□ 1.91
SQSTM1-209ENST00000504627 ILDR2Q71H61 639 aa26.97■■□□□ 1.91
SQSTM1-209ENST00000504627 NWD1Q149M9 1564 aa26.97■■□□□ 1.91
SQSTM1-209ENST00000504627 ADAMTS13Q76LX8 1427 aa26.93■■□□□ 1.9
SQSTM1-209ENST00000504627 SLC4A1APQ9BWU0 796 aaKnown RBP26.93■■□□□ 1.9
SQSTM1-209ENST00000504627 MSH6P52701 1360 aa26.93■■□□□ 1.9
SQSTM1-209ENST00000504627 CHD2O14647 1828 aaKnown RBP26.9■■□□□ 1.9
SQSTM1-209ENST00000504627 DIP2AQ14689 1571 aa26.9■■□□□ 1.9
SQSTM1-209ENST00000504627 PIK3R4Q99570 1358 aa26.89■■□□□ 1.9
SQSTM1-209ENST00000504627 C14orf37Q86TY3 774 aa26.89■■□□□ 1.9
SQSTM1-209ENST00000504627 TRPM2O94759 1503 aa26.89■■□□□ 1.89
SQSTM1-209ENST00000504627 FAM135BQ49AJ0 1406 aa26.89■■□□□ 1.89
SQSTM1-209ENST00000504627 TRIM26Q12899 539 aaPredicted RBP26.88■■□□□ 1.89
SQSTM1-209ENST00000504627 CLTCL1P53675 1640 aa26.87■■□□□ 1.89
SQSTM1-209ENST00000504627 MED1Q15648 1581 aaPredicted RBP26.85■■□□□ 1.89
SQSTM1-209ENST00000504627 AMOTL2Q9Y2J4 779 aa26.85■■□□□ 1.89
SQSTM1-209ENST00000504627 SLAIN2Q9P270 581 aa26.83■■□□□ 1.89
SQSTM1-209ENST00000504627 NCOA3Q9Y6Q9 1424 aa26.82■■□□□ 1.88
SQSTM1-209ENST00000504627 PHF23Q9BUL5 403 aaPredicted RBP26.82■■□□□ 1.88
SQSTM1-209ENST00000504627 KIF1BO60333 1816 aa26.81■■□□□ 1.88
SQSTM1-209ENST00000504627 SOCS7O14512 581 aa26.78■■□□□ 1.88
SQSTM1-209ENST00000504627 FOXD1Q16676 465 aa26.78■■□□□ 1.88
SQSTM1-209ENST00000504627 PTPRUQ92729 1446 aa26.78■■□□□ 1.88
SQSTM1-209ENST00000504627 SETBP1Q9Y6X0 1596 aa26.78■■□□□ 1.88
SQSTM1-209ENST00000504627 ROBO1Q9Y6N7 1651 aa26.78■■□□□ 1.88
SQSTM1-209ENST00000504627 NEXMIFQ5QGS0 1516 aa26.77■■□□□ 1.88
SQSTM1-209ENST00000504627 C19orf44Q9H6X5 657 aa26.77■■□□□ 1.88
SQSTM1-209ENST00000504627 VGFO15240 615 aaPredicted RBP26.76■■□□□ 1.87
SQSTM1-209ENST00000504627 ATF3P18847 181 aa26.76■■□□□ 1.87
SQSTM1-209ENST00000504627 NRXN3Q9Y4C0 1643 aa26.76■■□□□ 1.87
SQSTM1-209ENST00000504627 CADPS2Q86UW7 1296 aa26.75■■□□□ 1.87
SQSTM1-209ENST00000504627 METP08581 1390 aa26.73■■□□□ 1.87
SQSTM1-209ENST00000504627 RPGRIP1LQ68CZ1 1315 aa26.73■■□□□ 1.87
SQSTM1-209ENST00000504627 MPHOSPH9Q99550 1183 aa26.73■■□□□ 1.87
SQSTM1-209ENST00000504627 ACIN1Q9UKV3 1341 aaKnown RBP26.69■■□□□ 1.86
SQSTM1-209ENST00000504627 CCDC144AA2RUR9 1427 aa26.68■■□□□ 1.86
SQSTM1-209ENST00000504627 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.68■■□□□ 1.86
SQSTM1-209ENST00000504627 SETD5Q9C0A6 1442 aa26.66■■□□□ 1.86
SQSTM1-209ENST00000504627 XRN1Q8IZH2 1706 aaKnown RBP26.66■■□□□ 1.86
SQSTM1-209ENST00000504627 RGL3Q3MIN7 710 aa26.64■■□□□ 1.86
SQSTM1-209ENST00000504627 PCGF6Q9BYE7 350 aa26.63■■□□□ 1.85
SQSTM1-209ENST00000504627 PHLPP1O60346 1717 aa26.62■■□□□ 1.85
SQSTM1-209ENST00000504627 DCCP43146 1447 aa26.61■■□□□ 1.85
SQSTM1-209ENST00000504627 JCADQ9P266 1359 aa26.58■■□□□ 1.85
SQSTM1-209ENST00000504627 PPLO60437 1756 aa26.58■■□□□ 1.85
SQSTM1-209ENST00000504627 BRINP3Q76B58 766 aa26.57■■□□□ 1.84
SQSTM1-209ENST00000504627 RAB3GAP2Q9H2M9 1393 aa26.56■■□□□ 1.84
SQSTM1-209ENST00000504627 ADGRL3Q9HAR2 1447 aa26.56■■□□□ 1.84
SQSTM1-209ENST00000504627 ADGRF5Q8IZF2 1346 aa26.54■■□□□ 1.84
SQSTM1-209ENST00000504627 ANKRD30BQ9BXX2 1392 aa26.53■■□□□ 1.84
SQSTM1-209ENST00000504627 PTCH1Q13635 1447 aa26.53■■□□□ 1.84
SQSTM1-209ENST00000504627 SPATA31E1Q6ZUB1 1445 aa26.53■■□□□ 1.84
SQSTM1-209ENST00000504627 MST1RQ04912 1400 aa26.52■■□□□ 1.84
SQSTM1-209ENST00000504627 COL16A1Q07092 1604 aaPredicted RBP26.52■■□□□ 1.84
SQSTM1-209ENST00000504627 RGS17Q9UGC6 210 aaPredicted RBP26.52■■□□□ 1.84
SQSTM1-209ENST00000504627 SETD1AO15047 1707 aaKnown RBP26.51■■□□□ 1.83
SQSTM1-209ENST00000504627 ROBO2Q9HCK4 1378 aa26.51■■□□□ 1.83
SQSTM1-209ENST00000504627 AHDC1Q5TGY3 1603 aaPredicted RBP26.5■■□□□ 1.83
SQSTM1-209ENST00000504627 ASXL1Q8IXJ9 1541 aa26.47■■□□□ 1.83
SQSTM1-209ENST00000504627 NALCNQ8IZF0 1738 aa26.47■■□□□ 1.83
SQSTM1-209ENST00000504627 SPATA31A6Q5VVP1 1343 aa26.46■■□□□ 1.83
SQSTM1-209ENST00000504627 MEX3CQ5U5Q3 659 aaKnown RBP26.45■■□□□ 1.82
SQSTM1-209ENST00000504627 STK26Q9P289 416 aa26.45■■□□□ 1.82
SQSTM1-209ENST00000504627 PRAG1Q86YV5 1406 aa26.44■■□□□ 1.82
SQSTM1-209ENST00000504627 C1orf167Q5SNV9 1468 aa26.42■■□□□ 1.82
SQSTM1-209ENST00000504627 TMEM132EQ6IEE7 984 aa26.41■■□□□ 1.82
SQSTM1-209ENST00000504627 LRRC59Q96AG4 307 aaKnown RBP26.41■■□□□ 1.82
SQSTM1-209ENST00000504627 IFT172Q9UG01 1749 aa26.41■■□□□ 1.82
SQSTM1-209ENST00000504627 POTEAQ6S8J7 498 aa26.4■■□□□ 1.82
SQSTM1-209ENST00000504627 DDX17Q92841 729 aaKnown RBP26.4■■□□□ 1.82
SQSTM1-209ENST00000504627 PIK3C2GO75747 1445 aa26.39■■□□□ 1.82
SQSTM1-209ENST00000504627 LRPPRCP42704 1394 aaKnown RBP26.38■■□□□ 1.81
SQSTM1-209ENST00000504627 NUTM2BA6NNL0 878 aaPredicted RBP26.38■■□□□ 1.81
SQSTM1-209ENST00000504627 NUTM2EB1AL46 878 aaPredicted RBP26.38■■□□□ 1.81
SQSTM1-209ENST00000504627 NUTM2AQ8IVF1 878 aaPredicted RBP26.38■■□□□ 1.81
SQSTM1-209ENST00000504627 HRCP23327 699 aa26.37■■□□□ 1.81
SQSTM1-209ENST00000504627 ORAI2Q96SN7 254 aa26.37■■□□□ 1.81
SQSTM1-209ENST00000504627 SHPRHQ149N8 1683 aa26.37■■□□□ 1.81
SQSTM1-209ENST00000504627 WAPLQ7Z5K2 1190 aa26.36■■□□□ 1.81
SQSTM1-209ENST00000504627 LRP6O75581 1613 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms