RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 TMEM131LA2VDJ0 1609 aa17.58■□□□□ 0.41
PDLIM5-208ENST00000504489 ADGRB3O60242 1522 aa17.57■□□□□ 0.4
PDLIM5-208ENST00000504489 PCGF6Q9BYE7 350 aa17.57■□□□□ 0.4
PDLIM5-208ENST00000504489 HSPA2P54652 639 aa17.55■□□□□ 0.4
PDLIM5-208ENST00000504489 THEMISQ8N1K5 641 aaPredicted RBP17.55■□□□□ 0.4
PDLIM5-208ENST00000504489 SLIT1O75093 1534 aa17.52■□□□□ 0.39
PDLIM5-208ENST00000504489 STAG3Q9UJ98 1225 aa17.51■□□□□ 0.39
PDLIM5-208ENST00000504489 ARHGAP23Q9P227 1491 aa17.5■□□□□ 0.39
PDLIM5-208ENST00000504489 ANKRD30BQ9BXX2 1392 aa17.5■□□□□ 0.39
PDLIM5-208ENST00000504489 CCDC144AA2RUR9 1427 aa17.49■□□□□ 0.39
PDLIM5-208ENST00000504489 NEURL4Q96JN8 1562 aa17.48■□□□□ 0.39
PDLIM5-208ENST00000504489 TMEM2Q9UHN6 1383 aa17.47■□□□□ 0.39
PDLIM5-208ENST00000504489 PPLO60437 1756 aa17.47■□□□□ 0.39
PDLIM5-208ENST00000504489 DHX57Q6P158 1386 aaKnown RBP17.46■□□□□ 0.39
PDLIM5-208ENST00000504489 CHGAP10645 457 aaKnown RBP17.46■□□□□ 0.39
PDLIM5-208ENST00000504489 IFT172Q9UG01 1749 aa17.46■□□□□ 0.39
PDLIM5-208ENST00000504489 ANKLE2Q86XL3 938 aa17.45■□□□□ 0.38
PDLIM5-208ENST00000504489 IQGAP1P46940 1657 aa17.44■□□□□ 0.38
PDLIM5-208ENST00000504489 ZFYVE9O95405 1425 aa17.44■□□□□ 0.38
PDLIM5-208ENST00000504489 MED14O60244 1454 aa17.44■□□□□ 0.38
PDLIM5-208ENST00000504489 SCAF11Q99590 1463 aaKnown RBP17.44■□□□□ 0.38
PDLIM5-208ENST00000504489 NCKAP5LQ9HCH0 1330 aa17.43■□□□□ 0.38
PDLIM5-208ENST00000504489 SPATA31E1Q6ZUB1 1445 aa17.42■□□□□ 0.38
PDLIM5-208ENST00000504489 RIMS2Q9UQ26 1411 aa17.42■□□□□ 0.38
PDLIM5-208ENST00000504489 EID1Q9Y6B2 187 aa17.42■□□□□ 0.38
PDLIM5-208ENST00000504489 NEXMIFQ5QGS0 1516 aa17.42■□□□□ 0.38
PDLIM5-208ENST00000504489 LTKP29376 864 aa17.41■□□□□ 0.38
PDLIM5-208ENST00000504489 HDGFP51858 240 aaKnown RBP17.41■□□□□ 0.38
PDLIM5-208ENST00000504489 TXNDC2Q86VQ3 553 aa17.41■□□□□ 0.38
PDLIM5-208ENST00000504489 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.39■□□□□ 0.37
PDLIM5-208ENST00000504489 ZNF326Q5BKZ1 582 aaKnown RBP17.38■□□□□ 0.37
PDLIM5-208ENST00000504489 RPGRIP1LQ68CZ1 1315 aa17.38■□□□□ 0.37
PDLIM5-208ENST00000504489 NPHP4O75161 1426 aaPredicted RBP17.38■□□□□ 0.37
PDLIM5-208ENST00000504489 CAPN15O75808 1086 aa17.37■□□□□ 0.37
PDLIM5-208ENST00000504489 RGL3Q3MIN7 710 aa17.34■□□□□ 0.37
PDLIM5-208ENST00000504489 SPINK5Q9NQ38 1064 aaPredicted RBP17.34■□□□□ 0.37
PDLIM5-208ENST00000504489 PLEKHG1Q9ULL1 1385 aa17.34■□□□□ 0.37
PDLIM5-208ENST00000504489 NRXN3Q9Y4C0 1643 aa17.33■□□□□ 0.37
PDLIM5-208ENST00000504489 PPP1R15AO75807 674 aaPredicted RBP17.33■□□□□ 0.36
PDLIM5-208ENST00000504489 CHD2O14647 1828 aaKnown RBP17.33■□□□□ 0.36
PDLIM5-208ENST00000504489 SETBP1Q9Y6X0 1596 aa17.32■□□□□ 0.36
PDLIM5-208ENST00000504489 VGFO15240 615 aaPredicted RBP17.32■□□□□ 0.36
PDLIM5-208ENST00000504489 NUTM2DQ5VT03 806 aaPredicted RBP17.31■□□□□ 0.36
PDLIM5-208ENST00000504489 DIP2AQ14689 1571 aa17.31■□□□□ 0.36
PDLIM5-208ENST00000504489 SETD1AO15047 1707 aaKnown RBP17.3■□□□□ 0.36
PDLIM5-208ENST00000504489 SIN3AQ96ST3 1273 aa17.3■□□□□ 0.36
PDLIM5-208ENST00000504489 STRCP1A6NGW2 1772 aa17.3■□□□□ 0.36
PDLIM5-208ENST00000504489 CLSPNQ9HAW4 1339 aa17.28■□□□□ 0.36
PDLIM5-208ENST00000504489 STAC3Q96MF2 364 aa17.28■□□□□ 0.36
PDLIM5-208ENST00000504489 MYOM2P54296 1465 aa17.28■□□□□ 0.36
PDLIM5-208ENST00000504489 ADAMTS13Q76LX8 1427 aa17.27■□□□□ 0.35
PDLIM5-208ENST00000504489 SAMD1Q6SPF0 538 aaPredicted RBP17.26■□□□□ 0.35
PDLIM5-208ENST00000504489 BCANQ96GW7 911 aa17.26■□□□□ 0.35
PDLIM5-208ENST00000504489 TBX22Q9Y458 520 aa17.26■□□□□ 0.35
PDLIM5-208ENST00000504489 LAMC1P11047 1609 aa17.25■□□□□ 0.35
PDLIM5-208ENST00000504489 NRXN1Q9ULB1 1477 aa17.25■□□□□ 0.35
PDLIM5-208ENST00000504489 NEUROD1Q13562 356 aa17.25■□□□□ 0.35
PDLIM5-208ENST00000504489 SLC26A8Q96RN1 970 aa17.25■□□□□ 0.35
PDLIM5-208ENST00000504489 ALKQ9UM73 1620 aa17.25■□□□□ 0.35
PDLIM5-208ENST00000504489 ADGRF5Q8IZF2 1346 aa17.24■□□□□ 0.35
PDLIM5-208ENST00000504489 MYCNP04198 464 aaPredicted RBP17.24■□□□□ 0.35
PDLIM5-208ENST00000504489 PIK3C2GO75747 1445 aa17.23■□□□□ 0.35
PDLIM5-208ENST00000504489 LTBP4Q8N2S1 1624 aa17.23■□□□□ 0.35
PDLIM5-208ENST00000504489 DCAF11Q8TEB1 546 aa17.23■□□□□ 0.35
PDLIM5-208ENST00000504489 KIAA1210Q9ULL0 1709 aa17.22■□□□□ 0.35
PDLIM5-208ENST00000504489 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
PDLIM5-208ENST00000504489 PIK3R4Q99570 1358 aa17.22■□□□□ 0.35
PDLIM5-208ENST00000504489 NWD1Q149M9 1564 aa17.22■□□□□ 0.35
PDLIM5-208ENST00000504489 XIRP1Q702N8 1843 aaKnown RBP17.21■□□□□ 0.35
PDLIM5-208ENST00000504489 ZNF335Q9H4Z2 1342 aaPredicted RBP17.21■□□□□ 0.34
PDLIM5-208ENST00000504489 L3MBTL2Q969R5 705 aa17.2■□□□□ 0.34
PDLIM5-208ENST00000504489 FOXD4L1Q9NU39 408 aa17.2■□□□□ 0.34
PDLIM5-208ENST00000504489 KDM2AQ9Y2K7 1162 aa17.2■□□□□ 0.34
PDLIM5-208ENST00000504489 XRN1Q8IZH2 1706 aaKnown RBP17.19■□□□□ 0.34
PDLIM5-208ENST00000504489 CPS1P31327 1500 aa17.19■□□□□ 0.34
PDLIM5-208ENST00000504489 KCNA6P17658 529 aa17.17■□□□□ 0.34
PDLIM5-208ENST00000504489 C14orf93Q9H972 538 aaKnown RBP17.17■□□□□ 0.34
PDLIM5-208ENST00000504489 METP08581 1390 aa17.16■□□□□ 0.34
PDLIM5-208ENST00000504489 TONSLQ96HA7 1378 aa17.16■□□□□ 0.34
PDLIM5-208ENST00000504489 KNDC1Q76NI1 1749 aa17.16■□□□□ 0.34
PDLIM5-208ENST00000504489 NKTRP30414 1462 aaKnown RBP17.15■□□□□ 0.34
PDLIM5-208ENST00000504489 TRPM1Q7Z4N2 1603 aa17.14■□□□□ 0.33
PDLIM5-208ENST00000504489 PRAG1Q86YV5 1406 aa17.14■□□□□ 0.33
PDLIM5-208ENST00000504489 PTPRUQ92729 1446 aa17.14■□□□□ 0.33
PDLIM5-208ENST00000504489 ZNF219Q9P2Y4 722 aaPredicted RBP17.14■□□□□ 0.33
PDLIM5-208ENST00000504489 ASXL1Q8IXJ9 1541 aa17.14■□□□□ 0.33
PDLIM5-208ENST00000504489 DSG3P32926 999 aa17.13■□□□□ 0.33
PDLIM5-208ENST00000504489 CFAP70Q5T0N1 1121 aa17.13■□□□□ 0.33
PDLIM5-208ENST00000504489 TIMELESSQ9UNS1 1208 aa17.13■□□□□ 0.33
PDLIM5-208ENST00000504489 LRRC7Q96NW7 1537 aa17.11■□□□□ 0.33
PDLIM5-208ENST00000504489 AMOTL2Q9Y2J4 779 aa17.11■□□□□ 0.33
PDLIM5-208ENST00000504489 IQSEC2Q5JU85 1478 aa17.11■□□□□ 0.33
PDLIM5-208ENST00000504489 ADGRB1O14514 1584 aa17.11■□□□□ 0.33
PDLIM5-208ENST00000504489 CERKQ8TCT0 537 aa17.09■□□□□ 0.33
PDLIM5-208ENST00000504489 YTHDC2Q9H6S0 1430 aaKnown RBP17.08■□□□□ 0.32
PDLIM5-208ENST00000504489 LRPPRCP42704 1394 aaKnown RBP17.08■□□□□ 0.32
PDLIM5-208ENST00000504489 TMEM132EQ6IEE7 984 aa17.08■□□□□ 0.32
PDLIM5-208ENST00000504489 TECPR2O15040 1411 aa17.07■□□□□ 0.32
PDLIM5-208ENST00000504489 ABCC11Q96J66 1382 aa17.07■□□□□ 0.32
PDLIM5-208ENST00000504489 PROSER2Q86WR7 435 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms