RNA–Protein interactions for RNA: ENST00000504289.1

COL1A1-210, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 481 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-210ENST00000504289 RAPGEF3O95398 923 aa13.4□□□□□ -0.26
COL1A1-210ENST00000504289 CAMSAP1Q5T5Y3 1602 aa13.39□□□□□ -0.27
COL1A1-210ENST00000504289 FAM69CQ0P6D2 419 aa13.39□□□□□ -0.27
COL1A1-210ENST00000504289 MRS2Q9HD23 443 aa13.39□□□□□ -0.27
COL1A1-210ENST00000504289 SETBP1Q9Y6X0 1596 aa13.38□□□□□ -0.27
COL1A1-210ENST00000504289 GGT6Q6P531 493 aa13.38□□□□□ -0.27
COL1A1-210ENST00000504289 SLC52A1Q9NWF4 448 aa13.38□□□□□ -0.27
COL1A1-210ENST00000504289 BRD4O60885 1362 aaPredicted RBP13.37□□□□□ -0.27
COL1A1-210ENST00000504289 SBNO2Q9Y2G9 1366 aa13.37□□□□□ -0.27
COL1A1-210ENST00000504289 PIK3C2BO00750 1634 aa13.37□□□□□ -0.27
COL1A1-210ENST00000504289 ZFYVE9O95405 1425 aa13.36□□□□□ -0.27
COL1A1-210ENST00000504289 INSRP06213 1382 aa13.35□□□□□ -0.27
COL1A1-210ENST00000504289 MYBBP1AQ9BQG0 1328 aaKnown RBP13.35□□□□□ -0.27
COL1A1-210ENST00000504289 YEATS2Q9ULM3 1422 aa13.34□□□□□ -0.27
COL1A1-210ENST00000504289 PER1O15534 1290 aaPredicted RBP13.34□□□□□ -0.27
COL1A1-210ENST00000504289 HNRNPUQ00839 825 aaKnown RBP eCLIP13.34□□□□□ -0.27
COL1A1-210ENST00000504289 ZBED9Q6R2W3 1325 aa13.34□□□□□ -0.27
COL1A1-210ENST00000504289 PARD3Q8TEW0 1356 aa13.33□□□□□ -0.27
COL1A1-210ENST00000504289 DISP3Q9P2K9 1392 aa13.33□□□□□ -0.27
COL1A1-210ENST00000504289 PPLO60437 1756 aa13.33□□□□□ -0.28
COL1A1-210ENST00000504289 POLR3GLQ9BT43 218 aa13.33□□□□□ -0.28
COL1A1-210ENST00000504289 NPC1L1Q9UHC9 1359 aa13.32□□□□□ -0.28
COL1A1-210ENST00000504289 UGGT1Q9NYU2 1555 aa13.32□□□□□ -0.28
COL1A1-210ENST00000504289 MYO3AQ8NEV4 1616 aa13.32□□□□□ -0.28
COL1A1-210ENST00000504289 PIK3C2GO75747 1445 aa13.32□□□□□ -0.28
COL1A1-210ENST00000504289 VGFO15240 615 aaPredicted RBP13.32□□□□□ -0.28
COL1A1-210ENST00000504289 C14orf93Q9H972 538 aaKnown RBP13.32□□□□□ -0.28
COL1A1-210ENST00000504289 MROH2AA6NES4 1674 aa13.31□□□□□ -0.28
COL1A1-210ENST00000504289 NLRP13Q86W25 1043 aa13.31□□□□□ -0.28
COL1A1-210ENST00000504289 PUS7Q96PZ0 661 aaKnown RBP13.31□□□□□ -0.28
COL1A1-210ENST00000504289 SYNMO15061 1565 aa13.31□□□□□ -0.28
COL1A1-210ENST00000504289 ADGRF5Q8IZF2 1346 aa13.31□□□□□ -0.28
COL1A1-210ENST00000504289 TMC1Q8TDI8 760 aa13.3□□□□□ -0.28
COL1A1-210ENST00000504289 NEFLP07196 543 aa13.29□□□□□ -0.28
COL1A1-210ENST00000504289 CCDC184Q52MB2 194 aa13.29□□□□□ -0.28
COL1A1-210ENST00000504289 ERICH6BQ5W0A0 696 aa13.29□□□□□ -0.28
COL1A1-210ENST00000504289 PNISRQ8TF01 805 aaKnown RBP13.29□□□□□ -0.28
COL1A1-210ENST00000504289 SUPT16HQ9Y5B9 1047 aaKnown RBP13.29□□□□□ -0.28
COL1A1-210ENST00000504289 LRPPRCP42704 1394 aaKnown RBP13.29□□□□□ -0.28
COL1A1-210ENST00000504289 SIGLEC1Q9BZZ2 1709 aa13.28□□□□□ -0.28
COL1A1-210ENST00000504289 CFAP70Q5T0N1 1121 aa13.28□□□□□ -0.28
COL1A1-210ENST00000504289 MYT1Q01538 1121 aa13.27□□□□□ -0.29
COL1A1-210ENST00000504289 FAM9BQ8IZU0 186 aa13.27□□□□□ -0.29
COL1A1-210ENST00000504289 PREX1Q8TCU6 1659 aa13.27□□□□□ -0.29
COL1A1-210ENST00000504289 KDM4FA0A1W2PPD8 638 aa13.26□□□□□ -0.29
COL1A1-210ENST00000504289 ADGRB1O14514 1584 aa13.26□□□□□ -0.29
COL1A1-210ENST00000504289 KDM5AP29375 1690 aaKnown RBP13.26□□□□□ -0.29
COL1A1-210ENST00000504289 NEXMIFQ5QGS0 1516 aa13.26□□□□□ -0.29
COL1A1-210ENST00000504289 PANK3Q9H999 370 aa13.26□□□□□ -0.29
COL1A1-210ENST00000504289 ARHGEF40Q8TER5 1519 aa13.25□□□□□ -0.29
COL1A1-210ENST00000504289 CENPJQ9HC77 1338 aaPredicted RBP13.24□□□□□ -0.29
COL1A1-210ENST00000504289 CHGAP10645 457 aaKnown RBP13.24□□□□□ -0.29
COL1A1-210ENST00000504289 KNSTRNQ9Y448 316 aa13.24□□□□□ -0.29
COL1A1-210ENST00000504289 TSPOAP1O95153 1857 aa13.24□□□□□ -0.29
COL1A1-210ENST00000504289 ERVK-7P63135 1459 aa13.23□□□□□ -0.29
COL1A1-210ENST00000504289 CFAP65Q6ZU64 1925 aaKnown RBP13.23□□□□□ -0.29
COL1A1-210ENST00000504289 IDI1Q13907 227 aa13.23□□□□□ -0.29
COL1A1-210ENST00000504289 TMEM131LA2VDJ0 1609 aa13.23□□□□□ -0.29
COL1A1-210ENST00000504289 ASXL1Q8IXJ9 1541 aa13.22□□□□□ -0.29
COL1A1-210ENST00000504289 SPATA31D1Q6ZQQ2 1576 aa13.21□□□□□ -0.29
COL1A1-210ENST00000504289 SMG6Q86US8 1419 aaKnown RBP13.21□□□□□ -0.3
COL1A1-210ENST00000504289 AMER1Q5JTC6 1135 aaPredicted RBP13.2□□□□□ -0.3
COL1A1-210ENST00000504289 MYOM1P52179 1685 aa13.19□□□□□ -0.3
COL1A1-210ENST00000504289 PDE3BQ13370 1112 aa13.19□□□□□ -0.3
COL1A1-210ENST00000504289 NINLQ9Y2I6 1382 aa13.18□□□□□ -0.3
COL1A1-210ENST00000504289 FKBP8Q14318 412 aa13.17□□□□□ -0.3
COL1A1-210ENST00000504289 EVC2Q86UK5 1308 aa13.15□□□□□ -0.3
COL1A1-210ENST00000504289 QRICH2Q9H0J4 1663 aa13.15□□□□□ -0.3
COL1A1-210ENST00000504289 CLTCQ00610 1675 aaKnown RBP13.15□□□□□ -0.31
COL1A1-210ENST00000504289 HDGFP51858 240 aaKnown RBP13.14□□□□□ -0.31
COL1A1-210ENST00000504289 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.14□□□□□ -0.31
COL1A1-210ENST00000504289 NUDCQ9Y266 331 aa13.14□□□□□ -0.31
COL1A1-210ENST00000504289 BLMP54132 1417 aaPredicted RBP13.13□□□□□ -0.31
COL1A1-210ENST00000504289 USP32Q8NFA0 1604 aa13.13□□□□□ -0.31
COL1A1-210ENST00000504289 ARHGEF28Q8N1W1 1705 aaKnown RBP13.13□□□□□ -0.31
COL1A1-210ENST00000504289 A2ML1A8K2U0 1454 aa13.13□□□□□ -0.31
COL1A1-210ENST00000504289 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
COL1A1-210ENST00000504289 CC2D1BQ5T0F9 858 aaKnown RBP13.13□□□□□ -0.31
COL1A1-210ENST00000504289 NGEFQ8N5V2 710 aa13.13□□□□□ -0.31
COL1A1-210ENST00000504289 ESF1Q9H501 851 aaKnown RBP13.13□□□□□ -0.31
COL1A1-210ENST00000504289 TRAK1Q9UPV9 953 aa13.13□□□□□ -0.31
COL1A1-210ENST00000504289 NSD2O96028 1365 aa13.12□□□□□ -0.31
COL1A1-210ENST00000504289 DLC1Q96QB1 1528 aa13.12□□□□□ -0.31
COL1A1-210ENST00000504289 RNF123Q5XPI4 1314 aa13.12□□□□□ -0.31
COL1A1-210ENST00000504289 MYO5BQ9ULV0 1848 aa13.11□□□□□ -0.31
COL1A1-210ENST00000504289 ZMYM3Q14202 1370 aa13.11□□□□□ -0.31
COL1A1-210ENST00000504289 FBXO31Q5XUX0 539 aaPredicted RBP13.11□□□□□ -0.31
COL1A1-210ENST00000504289 ILDR1Q86SU0 546 aaPredicted RBP13.11□□□□□ -0.31
COL1A1-210ENST00000504289 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
COL1A1-210ENST00000504289 YTHDC2Q9H6S0 1430 aaKnown RBP13.1□□□□□ -0.31
COL1A1-210ENST00000504289 ALKQ9UM73 1620 aa13.1□□□□□ -0.31
COL1A1-210ENST00000504289 TMEM132EQ6IEE7 984 aa13.09□□□□□ -0.31
COL1A1-210ENST00000504289 SIRT1Q96EB6 747 aa13.09□□□□□ -0.31
COL1A1-210ENST00000504289 ATAD2Q6PL18 1390 aa13.08□□□□□ -0.31
COL1A1-210ENST00000504289 RIMS2Q9UQ26 1411 aa13.08□□□□□ -0.32
COL1A1-210ENST00000504289 PTPRMP28827 1452 aa13.08□□□□□ -0.32
COL1A1-210ENST00000504289 ANKRD36BQ8N2N9 1353 aa13.07□□□□□ -0.32
COL1A1-210ENST00000504289 CNGB1Q14028 1251 aaPredicted RBP13.07□□□□□ -0.32
COL1A1-210ENST00000504289 WDR43Q15061 677 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL1A1-210ENST00000504289 CARD14Q9BXL6 1004 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms