RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 HDGFP51858 240 aaKnown RBP18.18■□□□□ 0.5
MED28-203ENST00000503945 ROCK1Q13464 1354 aa18.17■□□□□ 0.5
MED28-203ENST00000503945 BCANQ96GW7 911 aa18.17■□□□□ 0.5
MED28-203ENST00000503945 MYO5BQ9ULV0 1848 aa18.16■□□□□ 0.5
MED28-203ENST00000503945 ADGRB3O60242 1522 aa18.14■□□□□ 0.49
MED28-203ENST00000503945 ROBO1Q9Y6N7 1651 aa18.13■□□□□ 0.49
MED28-203ENST00000503945 NUP155O75694 1391 aa18.12■□□□□ 0.49
MED28-203ENST00000503945 CHGAP10645 457 aaKnown RBP18.11■□□□□ 0.49
MED28-203ENST00000503945 POTEAQ6S8J7 498 aa18.11■□□□□ 0.49
MED28-203ENST00000503945 CHD2O14647 1828 aaKnown RBP18.1■□□□□ 0.49
MED28-203ENST00000503945 SLAIN2Q9P270 581 aa18.1■□□□□ 0.49
MED28-203ENST00000503945 NWD1Q149M9 1564 aa18.09■□□□□ 0.49
MED28-203ENST00000503945 RPRD2Q5VT52 1461 aaKnown RBP18.09■□□□□ 0.49
MED28-203ENST00000503945 ZFYVE9O95405 1425 aa18.09■□□□□ 0.49
MED28-203ENST00000503945 RIMS2Q9UQ26 1411 aa18.08■□□□□ 0.49
MED28-203ENST00000503945 MSH6P52701 1360 aa18.08■□□□□ 0.49
MED28-203ENST00000503945 PLEKHG1Q9ULL1 1385 aa18.08■□□□□ 0.49
MED28-203ENST00000503945 PPP1R15AO75807 674 aaPredicted RBP18.08■□□□□ 0.48
MED28-203ENST00000503945 GCC2Q8IWJ2 1684 aa18.08■□□□□ 0.48
MED28-203ENST00000503945 NKTRP30414 1462 aaKnown RBP18.07■□□□□ 0.48
MED28-203ENST00000503945 TBX22Q9Y458 520 aa18.07■□□□□ 0.48
MED28-203ENST00000503945 TMEM131LA2VDJ0 1609 aa18.07■□□□□ 0.48
MED28-203ENST00000503945 NUTM2DQ5VT03 806 aaPredicted RBP18.06■□□□□ 0.48
MED28-203ENST00000503945 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.06■□□□□ 0.48
MED28-203ENST00000503945 PHLPP1O60346 1717 aa18.04■□□□□ 0.48
MED28-203ENST00000503945 E9PCH4 1651 aa18.02■□□□□ 0.47
MED28-203ENST00000503945 UNC13BO14795 1591 aa18.01■□□□□ 0.47
MED28-203ENST00000503945 RRBP1Q9P2E9 1410 aaKnown RBP18■□□□□ 0.47
MED28-203ENST00000503945 TRIM52Q96A61 297 aa18■□□□□ 0.47
MED28-203ENST00000503945 ADAMTS13Q76LX8 1427 aa17.99■□□□□ 0.47
MED28-203ENST00000503945 C14orf37Q86TY3 774 aa17.99■□□□□ 0.47
MED28-203ENST00000503945 JCADQ9P266 1359 aa17.99■□□□□ 0.47
MED28-203ENST00000503945 NCOA3Q9Y6Q9 1424 aa17.98■□□□□ 0.47
MED28-203ENST00000503945 C19orf44Q9H6X5 657 aa17.97■□□□□ 0.47
MED28-203ENST00000503945 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.97■□□□□ 0.47
MED28-203ENST00000503945 ZNF326Q5BKZ1 582 aaKnown RBP17.96■□□□□ 0.47
MED28-203ENST00000503945 IQGAP3Q86VI3 1631 aa17.95■□□□□ 0.46
MED28-203ENST00000503945 CADPS2Q86UW7 1296 aa17.95■□□□□ 0.46
MED28-203ENST00000503945 AMOTL2Q9Y2J4 779 aa17.95■□□□□ 0.46
MED28-203ENST00000503945 COL16A1Q07092 1604 aaPredicted RBP17.94■□□□□ 0.46
MED28-203ENST00000503945 ATF3P18847 181 aa17.94■□□□□ 0.46
MED28-203ENST00000503945 PIK3R4Q99570 1358 aa17.93■□□□□ 0.46
MED28-203ENST00000503945 PTPRUQ92729 1446 aa17.93■□□□□ 0.46
MED28-203ENST00000503945 NAIPQ13075 1403 aa17.92■□□□□ 0.46
MED28-203ENST00000503945 DIP2AQ14689 1571 aa17.91■□□□□ 0.46
MED28-203ENST00000503945 SLC4A1APQ9BWU0 796 aaKnown RBP17.91■□□□□ 0.46
MED28-203ENST00000503945 SPATA31A6Q5VVP1 1343 aa17.9■□□□□ 0.46
MED28-203ENST00000503945 LRP6O75581 1613 aa17.9■□□□□ 0.46
MED28-203ENST00000503945 SETD1AO15047 1707 aaKnown RBP17.89■□□□□ 0.46
MED28-203ENST00000503945 TRPM2O94759 1503 aa17.89■□□□□ 0.45
MED28-203ENST00000503945 MEX3CQ5U5Q3 659 aaKnown RBP17.89■□□□□ 0.45
MED28-203ENST00000503945 BRINP3Q76B58 766 aa17.88■□□□□ 0.45
MED28-203ENST00000503945 AHDC1Q5TGY3 1603 aaPredicted RBP17.87■□□□□ 0.45
MED28-203ENST00000503945 NRXN3Q9Y4C0 1643 aa17.86■□□□□ 0.45
MED28-203ENST00000503945 HFM1A2PYH4 1435 aa17.85■□□□□ 0.45
MED28-203ENST00000503945 SHPRHQ149N8 1683 aa17.85■□□□□ 0.45
MED28-203ENST00000503945 ZNF772Q68DY9 489 aaPredicted RBP17.85■□□□□ 0.45
MED28-203ENST00000503945 SPHKAPQ2M3C7 1700 aa17.84■□□□□ 0.45
MED28-203ENST00000503945 NUTM2BA6NNL0 878 aaPredicted RBP17.84■□□□□ 0.45
MED28-203ENST00000503945 NUTM2EB1AL46 878 aaPredicted RBP17.84■□□□□ 0.45
MED28-203ENST00000503945 VGFO15240 615 aaPredicted RBP17.84■□□□□ 0.45
MED28-203ENST00000503945 NUTM2AQ8IVF1 878 aaPredicted RBP17.84■□□□□ 0.45
MED28-203ENST00000503945 METP08581 1390 aa17.83■□□□□ 0.45
MED28-203ENST00000503945 SETBP1Q9Y6X0 1596 aa17.82■□□□□ 0.44
MED28-203ENST00000503945 XRN1Q8IZH2 1706 aaKnown RBP17.81■□□□□ 0.44
MED28-203ENST00000503945 ACIN1Q9UKV3 1341 aaKnown RBP17.81■□□□□ 0.44
MED28-203ENST00000503945 UPF1Q92900 1129 aaKnown RBP eCLIP17.8■□□□□ 0.44
MED28-203ENST00000503945 MPHOSPH9Q99550 1183 aa17.8■□□□□ 0.44
MED28-203ENST00000503945 DCCP43146 1447 aa17.8■□□□□ 0.44
MED28-203ENST00000503945 MST1RQ04912 1400 aa17.8■□□□□ 0.44
MED28-203ENST00000503945 RPGRIP1LQ68CZ1 1315 aa17.79■□□□□ 0.44
MED28-203ENST00000503945 RXRBP28702 533 aa17.79■□□□□ 0.44
MED28-203ENST00000503945 DDX17Q92841 729 aaKnown RBP17.79■□□□□ 0.44
MED28-203ENST00000503945 ASXL1Q8IXJ9 1541 aa17.78■□□□□ 0.44
MED28-203ENST00000503945 FOXD1Q16676 465 aa17.78■□□□□ 0.44
MED28-203ENST00000503945 CLTCL1P53675 1640 aa17.77■□□□□ 0.44
MED28-203ENST00000503945 LRRC59Q96AG4 307 aaKnown RBP17.77■□□□□ 0.44
MED28-203ENST00000503945 SETD5Q9C0A6 1442 aa17.77■□□□□ 0.44
MED28-203ENST00000503945 NHSL1Q5SYE7 1610 aa17.76■□□□□ 0.43
MED28-203ENST00000503945 AFF2P51816 1311 aa17.75■□□□□ 0.43
MED28-203ENST00000503945 KIF1BO60333 1816 aa17.75■□□□□ 0.43
MED28-203ENST00000503945 NEXMIFQ5QGS0 1516 aa17.75■□□□□ 0.43
MED28-203ENST00000503945 RGL3Q3MIN7 710 aa17.74■□□□□ 0.43
MED28-203ENST00000503945 ADGRL3Q9HAR2 1447 aa17.73■□□□□ 0.43
MED28-203ENST00000503945 QTRT2Q9H974 415 aaKnown RBP17.72■□□□□ 0.43
MED28-203ENST00000503945 NALCNQ8IZF0 1738 aa17.72■□□□□ 0.43
MED28-203ENST00000503945 C8orf37Q96NL8 207 aa17.71■□□□□ 0.43
MED28-203ENST00000503945 PNPLA6Q8IY17 1366 aa17.7■□□□□ 0.42
MED28-203ENST00000503945 ORAI2Q96SN7 254 aa17.69■□□□□ 0.42
MED28-203ENST00000503945 C1orf167Q5SNV9 1468 aa17.69■□□□□ 0.42
MED28-203ENST00000503945 CDK12Q9NYV4 1490 aaPredicted RBP17.68■□□□□ 0.42
MED28-203ENST00000503945 ROBO2Q9HCK4 1378 aa17.66■□□□□ 0.42
MED28-203ENST00000503945 CCDC144AA2RUR9 1427 aa17.66■□□□□ 0.42
MED28-203ENST00000503945 ADAMTS2O95450 1211 aa17.66■□□□□ 0.42
MED28-203ENST00000503945 RBM6P78332 1123 aaKnown RBP17.66■□□□□ 0.42
MED28-203ENST00000503945 NGLY1Q96IV0 654 aa17.66■□□□□ 0.42
MED28-203ENST00000503945 SOS2Q07890 1332 aaPredicted RBP17.64■□□□□ 0.41
MED28-203ENST00000503945 PTCH1Q13635 1447 aa17.63■□□□□ 0.41
MED28-203ENST00000503945 LAMC1P11047 1609 aa17.62■□□□□ 0.41
MED28-203ENST00000503945 PPLO60437 1756 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms