RNA–Protein interactions for RNA: ENST00000503418.5

UBE2D3-215, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 662 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-215ENST00000503418 SENP3Q9H4L4 574 aaPredicted RBP29.51■■■□□ 2.31
UBE2D3-215ENST00000503418 RIMS2Q9UQ26 1411 aa29.5■■■□□ 2.31
UBE2D3-215ENST00000503418 ZFYVE9O95405 1425 aa29.49■■■□□ 2.31
UBE2D3-215ENST00000503418 PPP1R15AO75807 674 aaPredicted RBP29.49■■■□□ 2.31
UBE2D3-215ENST00000503418 XIRP1Q702N8 1843 aaKnown RBP29.49■■■□□ 2.31
UBE2D3-215ENST00000503418 HSPA1LP34931 641 aa29.48■■■□□ 2.31
UBE2D3-215ENST00000503418 HDGFP51858 240 aaKnown RBP29.46■■■□□ 2.31
UBE2D3-215ENST00000503418 PLEKHG1Q9ULL1 1385 aa29.44■■■□□ 2.3
UBE2D3-215ENST00000503418 KCNA6P17658 529 aa29.44■■■□□ 2.3
UBE2D3-215ENST00000503418 NAIPQ13075 1403 aa29.44■■■□□ 2.3
UBE2D3-215ENST00000503418 SPHKAPQ2M3C7 1700 aa29.43■■■□□ 2.3
UBE2D3-215ENST00000503418 NUTM2DQ5VT03 806 aaPredicted RBP29.4■■■□□ 2.3
UBE2D3-215ENST00000503418 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.4■■■□□ 2.3
UBE2D3-215ENST00000503418 NWD1Q149M9 1564 aa29.39■■■□□ 2.3
UBE2D3-215ENST00000503418 TMEM94Q12767 1356 aa29.39■■■□□ 2.29
UBE2D3-215ENST00000503418 PROSER2Q86WR7 435 aaPredicted RBP29.37■■■□□ 2.29
UBE2D3-215ENST00000503418 NKTRP30414 1462 aaKnown RBP29.36■■■□□ 2.29
UBE2D3-215ENST00000503418 RBM33Q96EV2 1170 aaKnown RBP29.35■■■□□ 2.29
UBE2D3-215ENST00000503418 HFM1A2PYH4 1435 aa29.35■■■□□ 2.29
UBE2D3-215ENST00000503418 CHD2O14647 1828 aaKnown RBP29.34■■■□□ 2.29
UBE2D3-215ENST00000503418 ILDR2Q71H61 639 aa29.33■■■□□ 2.29
UBE2D3-215ENST00000503418 TRIM52Q96A61 297 aa29.32■■■□□ 2.28
UBE2D3-215ENST00000503418 TBX22Q9Y458 520 aa29.29■■■□□ 2.28
UBE2D3-215ENST00000503418 DIP2AQ14689 1571 aa29.29■■■□□ 2.28
UBE2D3-215ENST00000503418 ADAMTS13Q76LX8 1427 aa29.28■■■□□ 2.28
UBE2D3-215ENST00000503418 CLTCL1P53675 1640 aa29.28■■■□□ 2.28
UBE2D3-215ENST00000503418 TRPM2O94759 1503 aa29.27■■■□□ 2.28
UBE2D3-215ENST00000503418 ZNF326Q5BKZ1 582 aaKnown RBP29.27■■■□□ 2.28
UBE2D3-215ENST00000503418 MED1Q15648 1581 aaPredicted RBP29.26■■■□□ 2.28
UBE2D3-215ENST00000503418 MSH6P52701 1360 aa29.24■■■□□ 2.27
UBE2D3-215ENST00000503418 KIF1BO60333 1816 aa29.23■■■□□ 2.27
UBE2D3-215ENST00000503418 SLC4A1APQ9BWU0 796 aaKnown RBP29.2■■■□□ 2.26
UBE2D3-215ENST00000503418 FAM135BQ49AJ0 1406 aa29.2■■■□□ 2.26
UBE2D3-215ENST00000503418 PIK3R4Q99570 1358 aa29.19■■■□□ 2.26
UBE2D3-215ENST00000503418 ROBO1Q9Y6N7 1651 aa29.18■■■□□ 2.26
UBE2D3-215ENST00000503418 NRXN3Q9Y4C0 1643 aa29.18■■■□□ 2.26
UBE2D3-215ENST00000503418 C14orf37Q86TY3 774 aa29.16■■■□□ 2.26
UBE2D3-215ENST00000503418 SETBP1Q9Y6X0 1596 aa29.16■■■□□ 2.26
UBE2D3-215ENST00000503418 NEXMIFQ5QGS0 1516 aa29.15■■■□□ 2.26
UBE2D3-215ENST00000503418 AMOTL2Q9Y2J4 779 aa29.13■■■□□ 2.25
UBE2D3-215ENST00000503418 PTPRUQ92729 1446 aa29.12■■■□□ 2.25
UBE2D3-215ENST00000503418 NCOA3Q9Y6Q9 1424 aa29.11■■■□□ 2.25
UBE2D3-215ENST00000503418 SLAIN2Q9P270 581 aa29.1■■■□□ 2.25
UBE2D3-215ENST00000503418 PHF23Q9BUL5 403 aaPredicted RBP29.09■■■□□ 2.25
UBE2D3-215ENST00000503418 SOCS7O14512 581 aa29.08■■■□□ 2.25
UBE2D3-215ENST00000503418 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.08■■■□□ 2.25
UBE2D3-215ENST00000503418 FOXD1Q16676 465 aa29.07■■■□□ 2.24
UBE2D3-215ENST00000503418 XRN1Q8IZH2 1706 aaKnown RBP29.07■■■□□ 2.24
UBE2D3-215ENST00000503418 METP08581 1390 aa29.05■■■□□ 2.24
UBE2D3-215ENST00000503418 C19orf44Q9H6X5 657 aa29.04■■■□□ 2.24
UBE2D3-215ENST00000503418 PHLPP1O60346 1717 aa29.03■■■□□ 2.24
UBE2D3-215ENST00000503418 ATF3P18847 181 aa29.02■■■□□ 2.24
UBE2D3-215ENST00000503418 CADPS2Q86UW7 1296 aa29.02■■■□□ 2.24
UBE2D3-215ENST00000503418 VGFO15240 615 aaPredicted RBP29■■■□□ 2.23
UBE2D3-215ENST00000503418 PPLO60437 1756 aa28.99■■■□□ 2.23
UBE2D3-215ENST00000503418 MPHOSPH9Q99550 1183 aa28.99■■■□□ 2.23
UBE2D3-215ENST00000503418 RPGRIP1LQ68CZ1 1315 aa28.97■■■□□ 2.23
UBE2D3-215ENST00000503418 CCDC144AA2RUR9 1427 aa28.97■■■□□ 2.23
UBE2D3-215ENST00000503418 SETD5Q9C0A6 1442 aa28.94■■■□□ 2.22
UBE2D3-215ENST00000503418 SETD1AO15047 1707 aaKnown RBP28.94■■■□□ 2.22
UBE2D3-215ENST00000503418 DCCP43146 1447 aa28.93■■■□□ 2.22
UBE2D3-215ENST00000503418 COL16A1Q07092 1604 aaPredicted RBP28.9■■■□□ 2.22
UBE2D3-215ENST00000503418 RGL3Q3MIN7 710 aa28.89■■■□□ 2.22
UBE2D3-215ENST00000503418 NALCNQ8IZF0 1738 aa28.89■■■□□ 2.21
UBE2D3-215ENST00000503418 ACIN1Q9UKV3 1341 aaKnown RBP28.88■■■□□ 2.21
UBE2D3-215ENST00000503418 JCADQ9P266 1359 aa28.88■■■□□ 2.21
UBE2D3-215ENST00000503418 ADGRL3Q9HAR2 1447 aa28.87■■■□□ 2.21
UBE2D3-215ENST00000503418 AHDC1Q5TGY3 1603 aaPredicted RBP28.87■■■□□ 2.21
UBE2D3-215ENST00000503418 BRINP3Q76B58 766 aa28.85■■■□□ 2.21
UBE2D3-215ENST00000503418 RAB3GAP2Q9H2M9 1393 aa28.85■■■□□ 2.21
UBE2D3-215ENST00000503418 MST1RQ04912 1400 aa28.85■■■□□ 2.21
UBE2D3-215ENST00000503418 PTCH1Q13635 1447 aa28.85■■■□□ 2.21
UBE2D3-215ENST00000503418 SPATA31E1Q6ZUB1 1445 aa28.85■■■□□ 2.21
UBE2D3-215ENST00000503418 IFT172Q9UG01 1749 aa28.83■■■□□ 2.21
UBE2D3-215ENST00000503418 RGS17Q9UGC6 210 aaPredicted RBP28.82■■■□□ 2.2
UBE2D3-215ENST00000503418 ADGRF5Q8IZF2 1346 aa28.82■■■□□ 2.2
UBE2D3-215ENST00000503418 ASXL1Q8IXJ9 1541 aa28.81■■■□□ 2.2
UBE2D3-215ENST00000503418 ROBO2Q9HCK4 1378 aa28.81■■■□□ 2.2
UBE2D3-215ENST00000503418 ANKRD30BQ9BXX2 1392 aa28.79■■■□□ 2.2
UBE2D3-215ENST00000503418 PRAG1Q86YV5 1406 aa28.77■■■□□ 2.2
UBE2D3-215ENST00000503418 SHPRHQ149N8 1683 aa28.75■■■□□ 2.19
UBE2D3-215ENST00000503418 NHSL1Q5SYE7 1610 aa28.75■■■□□ 2.19
UBE2D3-215ENST00000503418 SPATA31A6Q5VVP1 1343 aa28.72■■■□□ 2.19
UBE2D3-215ENST00000503418 C1orf167Q5SNV9 1468 aa28.71■■■□□ 2.19
UBE2D3-215ENST00000503418 PIK3C2GO75747 1445 aa28.7■■■□□ 2.19
UBE2D3-215ENST00000503418 LRP6O75581 1613 aa28.7■■■□□ 2.19
UBE2D3-215ENST00000503418 STK26Q9P289 416 aa28.7■■■□□ 2.18
UBE2D3-215ENST00000503418 POTEAQ6S8J7 498 aa28.69■■■□□ 2.18
UBE2D3-215ENST00000503418 MEX3CQ5U5Q3 659 aaKnown RBP28.68■■■□□ 2.18
UBE2D3-215ENST00000503418 DDX17Q92841 729 aaKnown RBP28.68■■■□□ 2.18
UBE2D3-215ENST00000503418 TMEM132EQ6IEE7 984 aa28.66■■■□□ 2.18
UBE2D3-215ENST00000503418 LRPPRCP42704 1394 aaKnown RBP28.64■■■□□ 2.18
UBE2D3-215ENST00000503418 KNDC1Q76NI1 1749 aa28.64■■■□□ 2.18
UBE2D3-215ENST00000503418 TECPR2O15040 1411 aa28.63■■■□□ 2.17
UBE2D3-215ENST00000503418 NUTM2BA6NNL0 878 aaPredicted RBP28.63■■■□□ 2.17
UBE2D3-215ENST00000503418 NUTM2EB1AL46 878 aaPredicted RBP28.63■■■□□ 2.17
UBE2D3-215ENST00000503418 NUTM2AQ8IVF1 878 aaPredicted RBP28.63■■■□□ 2.17
UBE2D3-215ENST00000503418 MYOM2P54296 1465 aa28.62■■■□□ 2.17
UBE2D3-215ENST00000503418 LRRC59Q96AG4 307 aaKnown RBP28.62■■■□□ 2.17
UBE2D3-215ENST00000503418 ORAI2Q96SN7 254 aa28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms