RNA–Protein interactions for RNA: ENST00000502948.1

LSM3P4-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4, humanhuman

BASIC

Gene LSM3P4, Length 309 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P4-201ENST00000502948 MYO5BQ9ULV0 1848 aa9.49□□□□□ -0.89
LSM3P4-201ENST00000502948 PLEKHG1Q9ULL1 1385 aa9.49□□□□□ -0.89
LSM3P4-201ENST00000502948 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.48□□□□□ -0.89
LSM3P4-201ENST00000502948 STAG3Q9UJ98 1225 aa9.48□□□□□ -0.89
LSM3P4-201ENST00000502948 DIP2AQ14689 1571 aa9.48□□□□□ -0.89
LSM3P4-201ENST00000502948 E9PCH4 1651 aa9.47□□□□□ -0.89
LSM3P4-201ENST00000502948 TMEM94Q12767 1356 aa9.47□□□□□ -0.89
LSM3P4-201ENST00000502948 PIK3R4Q99570 1358 aa9.47□□□□□ -0.89
LSM3P4-201ENST00000502948 ROBO1Q9Y6N7 1651 aa9.46□□□□□ -0.89
LSM3P4-201ENST00000502948 CHIC2Q9UKJ5 165 aa9.46□□□□□ -0.9
LSM3P4-201ENST00000502948 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.45□□□□□ -0.9
LSM3P4-201ENST00000502948 TBX22Q9Y458 520 aa9.45□□□□□ -0.9
LSM3P4-201ENST00000502948 PHF23Q9BUL5 403 aaPredicted RBP9.44□□□□□ -0.9
LSM3P4-201ENST00000502948 RIMS2Q9UQ26 1411 aa9.43□□□□□ -0.9
LSM3P4-201ENST00000502948 MSH6P52701 1360 aa9.43□□□□□ -0.9
LSM3P4-201ENST00000502948 PROSER2Q86WR7 435 aaPredicted RBP9.43□□□□□ -0.9
LSM3P4-201ENST00000502948 FAM50AQ14320 339 aaKnown RBP9.42□□□□□ -0.9
LSM3P4-201ENST00000502948 SLC26A8Q96RN1 970 aa9.42□□□□□ -0.9
LSM3P4-201ENST00000502948 ADAMTS13Q76LX8 1427 aa9.41□□□□□ -0.9
LSM3P4-201ENST00000502948 PHLPP1O60346 1717 aa9.41□□□□□ -0.9
LSM3P4-201ENST00000502948 SPHKAPQ2M3C7 1700 aa9.41□□□□□ -0.9
LSM3P4-201ENST00000502948 TRPM2O94759 1503 aa9.41□□□□□ -0.9
LSM3P4-201ENST00000502948 DCCP43146 1447 aa9.4□□□□□ -0.9
LSM3P4-201ENST00000502948 SLAIN2Q9P270 581 aa9.4□□□□□ -0.9
LSM3P4-201ENST00000502948 RGS17Q9UGC6 210 aaPredicted RBP9.4□□□□□ -0.9
LSM3P4-201ENST00000502948 SETBP1Q9Y6X0 1596 aa9.4□□□□□ -0.9
LSM3P4-201ENST00000502948 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.39□□□□□ -0.91
LSM3P4-201ENST00000502948 COL16A1Q07092 1604 aaPredicted RBP9.39□□□□□ -0.91
LSM3P4-201ENST00000502948 AHDC1Q5TGY3 1603 aaPredicted RBP9.39□□□□□ -0.91
LSM3P4-201ENST00000502948 XRN1Q8IZH2 1706 aaKnown RBP9.39□□□□□ -0.91
LSM3P4-201ENST00000502948 JCADQ9P266 1359 aa9.38□□□□□ -0.91
LSM3P4-201ENST00000502948 NRXN3Q9Y4C0 1643 aa9.38□□□□□ -0.91
LSM3P4-201ENST00000502948 C19orf44Q9H6X5 657 aa9.38□□□□□ -0.91
LSM3P4-201ENST00000502948 SHPRHQ149N8 1683 aa9.38□□□□□ -0.91
LSM3P4-201ENST00000502948 NUP155O75694 1391 aa9.37□□□□□ -0.91
LSM3P4-201ENST00000502948 PPP1R15AO75807 674 aaPredicted RBP9.37□□□□□ -0.91
LSM3P4-201ENST00000502948 CADPS2Q86UW7 1296 aa9.37□□□□□ -0.91
LSM3P4-201ENST00000502948 SPATA31A6Q5VVP1 1343 aa9.36□□□□□ -0.91
LSM3P4-201ENST00000502948 RRBP1Q9P2E9 1410 aaKnown RBP9.36□□□□□ -0.91
LSM3P4-201ENST00000502948 KIF1BO60333 1816 aa9.35□□□□□ -0.91
LSM3P4-201ENST00000502948 PRAG1Q86YV5 1406 aa9.35□□□□□ -0.91
LSM3P4-201ENST00000502948 BCANQ96GW7 911 aa9.35□□□□□ -0.91
LSM3P4-201ENST00000502948 LAMC1P11047 1609 aa9.34□□□□□ -0.91
LSM3P4-201ENST00000502948 NHSL1Q5SYE7 1610 aa9.34□□□□□ -0.91
LSM3P4-201ENST00000502948 PTPRUQ92729 1446 aa9.33□□□□□ -0.92
LSM3P4-201ENST00000502948 NEXMIFQ5QGS0 1516 aa9.33□□□□□ -0.92
LSM3P4-201ENST00000502948 SETD5Q9C0A6 1442 aa9.32□□□□□ -0.92
LSM3P4-201ENST00000502948 CLTCL1P53675 1640 aa9.32□□□□□ -0.92
LSM3P4-201ENST00000502948 ATF3P18847 181 aa9.32□□□□□ -0.92
LSM3P4-201ENST00000502948 POTEAQ6S8J7 498 aa9.32□□□□□ -0.92
LSM3P4-201ENST00000502948 RBM33Q96EV2 1170 aaKnown RBP9.32□□□□□ -0.92
LSM3P4-201ENST00000502948 AMOTL2Q9Y2J4 779 aa9.32□□□□□ -0.92
LSM3P4-201ENST00000502948 NAIPQ13075 1403 aa9.31□□□□□ -0.92
LSM3P4-201ENST00000502948 SETD1AO15047 1707 aaKnown RBP9.31□□□□□ -0.92
LSM3P4-201ENST00000502948 MST1RQ04912 1400 aa9.31□□□□□ -0.92
LSM3P4-201ENST00000502948 ADGRL3Q9HAR2 1447 aa9.31□□□□□ -0.92
LSM3P4-201ENST00000502948 CDK12Q9NYV4 1490 aaPredicted RBP9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 CHGAP10645 457 aaKnown RBP9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 ZNF772Q68DY9 489 aaPredicted RBP9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 LRP6O75581 1613 aa9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 ASXL1Q8IXJ9 1541 aa9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 HFM1A2PYH4 1435 aa9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 PTCH1Q13635 1447 aa9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 RPGRIP1LQ68CZ1 1315 aa9.3□□□□□ -0.92
LSM3P4-201ENST00000502948 NALCNQ8IZF0 1738 aa9.29□□□□□ -0.92
LSM3P4-201ENST00000502948 BRINP3Q76B58 766 aa9.29□□□□□ -0.92
LSM3P4-201ENST00000502948 SENP3Q9H4L4 574 aaPredicted RBP9.29□□□□□ -0.92
LSM3P4-201ENST00000502948 METP08581 1390 aa9.28□□□□□ -0.92
LSM3P4-201ENST00000502948 PPLO60437 1756 aa9.28□□□□□ -0.92
LSM3P4-201ENST00000502948 C14orf37Q86TY3 774 aa9.28□□□□□ -0.92
LSM3P4-201ENST00000502948 VGFO15240 615 aaPredicted RBP9.27□□□□□ -0.93
LSM3P4-201ENST00000502948 NUTM2DQ5VT03 806 aaPredicted RBP9.27□□□□□ -0.93
LSM3P4-201ENST00000502948 LRRC59Q96AG4 307 aaKnown RBP9.27□□□□□ -0.93
LSM3P4-201ENST00000502948 ACIN1Q9UKV3 1341 aaKnown RBP9.27□□□□□ -0.93
LSM3P4-201ENST00000502948 ZNF326Q5BKZ1 582 aaKnown RBP9.25□□□□□ -0.93
LSM3P4-201ENST00000502948 COL22A1Q8NFW1 1626 aaPredicted RBP9.24□□□□□ -0.93
LSM3P4-201ENST00000502948 ITGAEP38570 1179 aa9.24□□□□□ -0.93
LSM3P4-201ENST00000502948 IFT172Q9UG01 1749 aa9.24□□□□□ -0.93
LSM3P4-201ENST00000502948 C1orf167Q5SNV9 1468 aa9.23□□□□□ -0.93
LSM3P4-201ENST00000502948 CDC42BPGQ6DT37 1551 aa9.23□□□□□ -0.93
LSM3P4-201ENST00000502948 SOS2Q07890 1332 aaPredicted RBP9.23□□□□□ -0.93
LSM3P4-201ENST00000502948 PNPLA6Q8IY17 1366 aa9.23□□□□□ -0.93
LSM3P4-201ENST00000502948 TECPR2O15040 1411 aa9.22□□□□□ -0.93
LSM3P4-201ENST00000502948 KNDC1Q76NI1 1749 aa9.22□□□□□ -0.93
LSM3P4-201ENST00000502948 RXRBP28702 533 aa9.21□□□□□ -0.94
LSM3P4-201ENST00000502948 MEX3CQ5U5Q3 659 aaKnown RBP9.21□□□□□ -0.94
LSM3P4-201ENST00000502948 ROBO2Q9HCK4 1378 aa9.21□□□□□ -0.94
LSM3P4-201ENST00000502948 MARF1Q9Y4F3 1742 aaKnown RBP9.2□□□□□ -0.94
LSM3P4-201ENST00000502948 UPF1Q92900 1129 aaKnown RBP eCLIP9.2□□□□□ -0.94
LSM3P4-201ENST00000502948 SLC4A1APQ9BWU0 796 aaKnown RBP9.2□□□□□ -0.94
LSM3P4-201ENST00000502948 ANKRD30BQ9BXX2 1392 aa9.2□□□□□ -0.94
LSM3P4-201ENST00000502948 SPATA31E1Q6ZUB1 1445 aa9.2□□□□□ -0.94
LSM3P4-201ENST00000502948 SIRT1Q96EB6 747 aa9.19□□□□□ -0.94
LSM3P4-201ENST00000502948 CCDC144AA2RUR9 1427 aa9.18□□□□□ -0.94
LSM3P4-201ENST00000502948 AFF2P51816 1311 aa9.18□□□□□ -0.94
LSM3P4-201ENST00000502948 RBM6P78332 1123 aaKnown RBP9.18□□□□□ -0.94
LSM3P4-201ENST00000502948 ABCC11Q96J66 1382 aa9.18□□□□□ -0.94
LSM3P4-201ENST00000502948 PIK3C2GO75747 1445 aa9.17□□□□□ -0.94
LSM3P4-201ENST00000502948 LRPPRCP42704 1394 aaKnown RBP9.17□□□□□ -0.94
LSM3P4-201ENST00000502948 FNBP4Q8N3X1 1017 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms