RNA–Protein interactions for RNA: ENST00000498534.5

CNOT4-211, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 2

Gene CNOT4, Length 481 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-211ENST00000498534 PROSER2Q86WR7 435 aaPredicted RBP18.52■□□□□ 0.56
CNOT4-211ENST00000498534 RPRD2Q5VT52 1461 aaKnown RBP18.49■□□□□ 0.55
CNOT4-211ENST00000498534 TMEM94Q12767 1356 aa18.48■□□□□ 0.55
CNOT4-211ENST00000498534 PPP1R15AO75807 674 aaPredicted RBP18.48■□□□□ 0.55
CNOT4-211ENST00000498534 ADGRB3O60242 1522 aa18.46■□□□□ 0.55
CNOT4-211ENST00000498534 TET3O43151 1660 aa18.46■□□□□ 0.55
CNOT4-211ENST00000498534 CHGAP10645 457 aaKnown RBP18.45■□□□□ 0.54
CNOT4-211ENST00000498534 FAM135BQ49AJ0 1406 aa18.45■□□□□ 0.54
CNOT4-211ENST00000498534 XIRP1Q702N8 1843 aaKnown RBP18.44■□□□□ 0.54
CNOT4-211ENST00000498534 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.44■□□□□ 0.54
CNOT4-211ENST00000498534 RBM33Q96EV2 1170 aaKnown RBP18.44■□□□□ 0.54
CNOT4-211ENST00000498534 ROCK1Q13464 1354 aa18.42■□□□□ 0.54
CNOT4-211ENST00000498534 ITGAEP38570 1179 aa18.41■□□□□ 0.54
CNOT4-211ENST00000498534 TBX22Q9Y458 520 aa18.41■□□□□ 0.54
CNOT4-211ENST00000498534 PLEKHG1Q9ULL1 1385 aa18.41■□□□□ 0.54
CNOT4-211ENST00000498534 RIMS2Q9UQ26 1411 aa18.4■□□□□ 0.54
CNOT4-211ENST00000498534 MSH6P52701 1360 aa18.4■□□□□ 0.54
CNOT4-211ENST00000498534 SLAIN2Q9P270 581 aa18.39■□□□□ 0.53
CNOT4-211ENST00000498534 NKTRP30414 1462 aaKnown RBP18.39■□□□□ 0.53
CNOT4-211ENST00000498534 NUP155O75694 1391 aa18.38■□□□□ 0.53
CNOT4-211ENST00000498534 ZFYVE9O95405 1425 aa18.38■□□□□ 0.53
CNOT4-211ENST00000498534 GCC2Q8IWJ2 1684 aa18.37■□□□□ 0.53
CNOT4-211ENST00000498534 UNC13BO14795 1591 aa18.36■□□□□ 0.53
CNOT4-211ENST00000498534 NUTM2DQ5VT03 806 aaPredicted RBP18.36■□□□□ 0.53
CNOT4-211ENST00000498534 C14orf37Q86TY3 774 aa18.36■□□□□ 0.53
CNOT4-211ENST00000498534 TMEM131LA2VDJ0 1609 aa18.35■□□□□ 0.53
CNOT4-211ENST00000498534 PPARGC1BQ86YN6 1023 aaKnown RBP18.35■□□□□ 0.53
CNOT4-211ENST00000498534 MYO5BQ9ULV0 1848 aa18.35■□□□□ 0.53
CNOT4-211ENST00000498534 NWD1Q149M9 1564 aa18.34■□□□□ 0.53
CNOT4-211ENST00000498534 RGS17Q9UGC6 210 aaPredicted RBP18.33■□□□□ 0.52
CNOT4-211ENST00000498534 CHD2O14647 1828 aaKnown RBP18.33■□□□□ 0.52
CNOT4-211ENST00000498534 ROBO1Q9Y6N7 1651 aa18.32■□□□□ 0.52
CNOT4-211ENST00000498534 E9PCH4 1651 aa18.31■□□□□ 0.52
CNOT4-211ENST00000498534 NCOA3Q9Y6Q9 1424 aa18.31■□□□□ 0.52
CNOT4-211ENST00000498534 IQGAP3Q86VI3 1631 aa18.31■□□□□ 0.52
CNOT4-211ENST00000498534 ATF3P18847 181 aa18.3■□□□□ 0.52
CNOT4-211ENST00000498534 C19orf44Q9H6X5 657 aa18.3■□□□□ 0.52
CNOT4-211ENST00000498534 PIK3R4Q99570 1358 aa18.3■□□□□ 0.52
CNOT4-211ENST00000498534 CADPS2Q86UW7 1296 aa18.29■□□□□ 0.52
CNOT4-211ENST00000498534 ZNF326Q5BKZ1 582 aaKnown RBP18.27■□□□□ 0.52
CNOT4-211ENST00000498534 CNKSR2Q8WXI2 1034 aa18.27■□□□□ 0.52
CNOT4-211ENST00000498534 AMOTL2Q9Y2J4 779 aa18.27■□□□□ 0.52
CNOT4-211ENST00000498534 ADAMTS13Q76LX8 1427 aa18.26■□□□□ 0.51
CNOT4-211ENST00000498534 JCADQ9P266 1359 aa18.26■□□□□ 0.51
CNOT4-211ENST00000498534 POTEAQ6S8J7 498 aa18.24■□□□□ 0.51
CNOT4-211ENST00000498534 DIP2AQ14689 1571 aa18.24■□□□□ 0.51
CNOT4-211ENST00000498534 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
CNOT4-211ENST00000498534 TRPM2O94759 1503 aa18.21■□□□□ 0.51
CNOT4-211ENST00000498534 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.18■□□□□ 0.5
CNOT4-211ENST00000498534 MEX3CQ5U5Q3 659 aaKnown RBP18.18■□□□□ 0.5
CNOT4-211ENST00000498534 SPATA31A6Q5VVP1 1343 aa18.18■□□□□ 0.5
CNOT4-211ENST00000498534 PTPRUQ92729 1446 aa18.17■□□□□ 0.5
CNOT4-211ENST00000498534 SPHKAPQ2M3C7 1700 aa18.16■□□□□ 0.5
CNOT4-211ENST00000498534 TRIM52Q96A61 297 aa18.16■□□□□ 0.5
CNOT4-211ENST00000498534 BRINP3Q76B58 766 aa18.15■□□□□ 0.5
CNOT4-211ENST00000498534 SETBP1Q9Y6X0 1596 aa18.13■□□□□ 0.49
CNOT4-211ENST00000498534 COL16A1Q07092 1604 aaPredicted RBP18.13■□□□□ 0.49
CNOT4-211ENST00000498534 VGFO15240 615 aaPredicted RBP18.13■□□□□ 0.49
CNOT4-211ENST00000498534 ZNF772Q68DY9 489 aaPredicted RBP18.13■□□□□ 0.49
CNOT4-211ENST00000498534 METP08581 1390 aa18.13■□□□□ 0.49
CNOT4-211ENST00000498534 RRBP1Q9P2E9 1410 aaKnown RBP18.13■□□□□ 0.49
CNOT4-211ENST00000498534 NCBP3Q53F19 620 aaKnown RBP18.12■□□□□ 0.49
CNOT4-211ENST00000498534 DCCP43146 1447 aa18.12■□□□□ 0.49
CNOT4-211ENST00000498534 NAIPQ13075 1403 aa18.12■□□□□ 0.49
CNOT4-211ENST00000498534 AHDC1Q5TGY3 1603 aaPredicted RBP18.1■□□□□ 0.49
CNOT4-211ENST00000498534 NUTM2BA6NNL0 878 aaPredicted RBP18.1■□□□□ 0.49
CNOT4-211ENST00000498534 NUTM2EB1AL46 878 aaPredicted RBP18.1■□□□□ 0.49
CNOT4-211ENST00000498534 NUTM2AQ8IVF1 878 aaPredicted RBP18.1■□□□□ 0.49
CNOT4-211ENST00000498534 SLC4A1APQ9BWU0 796 aaKnown RBP18.1■□□□□ 0.49
CNOT4-211ENST00000498534 LRRC59Q96AG4 307 aaKnown RBP18.09■□□□□ 0.49
CNOT4-211ENST00000498534 NRXN3Q9Y4C0 1643 aa18.09■□□□□ 0.49
CNOT4-211ENST00000498534 KIF1BO60333 1816 aa18.07■□□□□ 0.48
CNOT4-211ENST00000498534 XRN1Q8IZH2 1706 aaKnown RBP18.07■□□□□ 0.48
CNOT4-211ENST00000498534 RPGRIP1LQ68CZ1 1315 aa18.07■□□□□ 0.48
CNOT4-211ENST00000498534 CLTCL1P53675 1640 aa18.07■□□□□ 0.48
CNOT4-211ENST00000498534 NEXMIFQ5QGS0 1516 aa18.06■□□□□ 0.48
CNOT4-211ENST00000498534 MST1RQ04912 1400 aa18.06■□□□□ 0.48
CNOT4-211ENST00000498534 LRP6O75581 1613 aa18.05■□□□□ 0.48
CNOT4-211ENST00000498534 SHPRHQ149N8 1683 aa18.05■□□□□ 0.48
CNOT4-211ENST00000498534 ASXL1Q8IXJ9 1541 aa18.04■□□□□ 0.48
CNOT4-211ENST00000498534 RXRBP28702 533 aa18.04■□□□□ 0.48
CNOT4-211ENST00000498534 HFM1A2PYH4 1435 aa18.04■□□□□ 0.48
CNOT4-211ENST00000498534 ADGRL3Q9HAR2 1447 aa18.04■□□□□ 0.48
CNOT4-211ENST00000498534 SETD5Q9C0A6 1442 aa18.03■□□□□ 0.48
CNOT4-211ENST00000498534 HOXD11P31277 338 aaPredicted RBP18.02■□□□□ 0.48
CNOT4-211ENST00000498534 DDX17Q92841 729 aaKnown RBP18.01■□□□□ 0.47
CNOT4-211ENST00000498534 RNF216Q9NWF9 866 aaPredicted RBP18■□□□□ 0.47
CNOT4-211ENST00000498534 AFF2P51816 1311 aa17.98■□□□□ 0.47
CNOT4-211ENST00000498534 ROBO2Q9HCK4 1378 aa17.97■□□□□ 0.47
CNOT4-211ENST00000498534 C8orf37Q96NL8 207 aa17.97■□□□□ 0.47
CNOT4-211ENST00000498534 NHSL1Q5SYE7 1610 aa17.97■□□□□ 0.47
CNOT4-211ENST00000498534 PTCH1Q13635 1447 aa17.97■□□□□ 0.47
CNOT4-211ENST00000498534 C1orf167Q5SNV9 1468 aa17.96■□□□□ 0.47
CNOT4-211ENST00000498534 ORAI2Q96SN7 254 aa17.96■□□□□ 0.47
CNOT4-211ENST00000498534 SETD1AO15047 1707 aaKnown RBP17.95■□□□□ 0.46
CNOT4-211ENST00000498534 RGL3Q3MIN7 710 aa17.95■□□□□ 0.46
CNOT4-211ENST00000498534 UPF1Q92900 1129 aaKnown RBP eCLIP17.95■□□□□ 0.46
CNOT4-211ENST00000498534 NGLY1Q96IV0 654 aa17.95■□□□□ 0.46
CNOT4-211ENST00000498534 QTRT2Q9H974 415 aaKnown RBP17.95■□□□□ 0.46
CNOT4-211ENST00000498534 NALCNQ8IZF0 1738 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms