RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 NCKAP5LQ9HCH0 1330 aa17.27■□□□□ 0.36
CUX1-210ENST00000497815 TXNDC2Q86VQ3 553 aa17.27■□□□□ 0.36
CUX1-210ENST00000497815 SLIT1O75093 1534 aa17.26■□□□□ 0.35
CUX1-210ENST00000497815 ARHGAP23Q9P227 1491 aa17.26■□□□□ 0.35
CUX1-210ENST00000497815 PPP1R15AO75807 674 aaPredicted RBP17.26■□□□□ 0.35
CUX1-210ENST00000497815 ANKLE2Q86XL3 938 aa17.26■□□□□ 0.35
CUX1-210ENST00000497815 EID1Q9Y6B2 187 aa17.26■□□□□ 0.35
CUX1-210ENST00000497815 LTKP29376 864 aa17.25■□□□□ 0.35
CUX1-210ENST00000497815 ZFYVE9O95405 1425 aa17.24■□□□□ 0.35
CUX1-210ENST00000497815 SCAF11Q99590 1463 aaKnown RBP17.24■□□□□ 0.35
CUX1-210ENST00000497815 NEXMIFQ5QGS0 1516 aa17.23■□□□□ 0.35
CUX1-210ENST00000497815 HDGFP51858 240 aaKnown RBP17.23■□□□□ 0.35
CUX1-210ENST00000497815 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.23■□□□□ 0.35
CUX1-210ENST00000497815 NEURL4Q96JN8 1562 aa17.23■□□□□ 0.35
CUX1-210ENST00000497815 RPGRIP1LQ68CZ1 1315 aa17.22■□□□□ 0.35
CUX1-210ENST00000497815 CLSPNQ9HAW4 1339 aa17.22■□□□□ 0.35
CUX1-210ENST00000497815 ADRA2BP18089 450 aa17.22■□□□□ 0.35
CUX1-210ENST00000497815 BCANQ96GW7 911 aa17.22■□□□□ 0.35
CUX1-210ENST00000497815 DCAF11Q8TEB1 546 aa17.21■□□□□ 0.35
CUX1-210ENST00000497815 KDM2AQ9Y2K7 1162 aa17.21■□□□□ 0.35
CUX1-210ENST00000497815 POLR1AO95602 1720 aaPredicted RBP17.21■□□□□ 0.35
CUX1-210ENST00000497815 TONSLQ96HA7 1378 aa17.2■□□□□ 0.34
CUX1-210ENST00000497815 STRCQ7RTU9 1775 aa17.2■□□□□ 0.34
CUX1-210ENST00000497815 VGFO15240 615 aaPredicted RBP17.19■□□□□ 0.34
CUX1-210ENST00000497815 L3MBTL2Q969R5 705 aa17.19■□□□□ 0.34
CUX1-210ENST00000497815 PPLO60437 1756 aa17.19■□□□□ 0.34
CUX1-210ENST00000497815 NPHP4O75161 1426 aaPredicted RBP17.19■□□□□ 0.34
CUX1-210ENST00000497815 IFT172Q9UG01 1749 aa17.17■□□□□ 0.34
CUX1-210ENST00000497815 ADGRF5Q8IZF2 1346 aa17.17■□□□□ 0.34
CUX1-210ENST00000497815 PLEKHG1Q9ULL1 1385 aa17.16■□□□□ 0.34
CUX1-210ENST00000497815 SLC26A8Q96RN1 970 aa17.15■□□□□ 0.34
CUX1-210ENST00000497815 MED14O60244 1454 aa17.15■□□□□ 0.34
CUX1-210ENST00000497815 IQGAP1P46940 1657 aa17.14■□□□□ 0.33
CUX1-210ENST00000497815 MYOM2P54296 1465 aa17.14■□□□□ 0.33
CUX1-210ENST00000497815 DMRT2Q9Y5R5 561 aa17.13■□□□□ 0.33
CUX1-210ENST00000497815 PIK3C2GO75747 1445 aa17.1■□□□□ 0.33
CUX1-210ENST00000497815 SETBP1Q9Y6X0 1596 aa17.1■□□□□ 0.33
CUX1-210ENST00000497815 NRXN3Q9Y4C0 1643 aa17.1■□□□□ 0.33
CUX1-210ENST00000497815 STAC3Q96MF2 364 aa17.09■□□□□ 0.33
CUX1-210ENST00000497815 ADAMTS13Q76LX8 1427 aa17.09■□□□□ 0.33
CUX1-210ENST00000497815 NRXN1Q9ULB1 1477 aa17.09■□□□□ 0.33
CUX1-210ENST00000497815 PRAG1Q86YV5 1406 aa17.07■□□□□ 0.32
CUX1-210ENST00000497815 CFAP70Q5T0N1 1121 aa17.07■□□□□ 0.32
CUX1-210ENST00000497815 ALKQ9UM73 1620 aa17.07■□□□□ 0.32
CUX1-210ENST00000497815 TIMELESSQ9UNS1 1208 aa17.06■□□□□ 0.32
CUX1-210ENST00000497815 TBX22Q9Y458 520 aa17.06■□□□□ 0.32
CUX1-210ENST00000497815 DIP2AQ14689 1571 aa17.05■□□□□ 0.32
CUX1-210ENST00000497815 METP08581 1390 aa17.04■□□□□ 0.32
CUX1-210ENST00000497815 NBPF8Q3BBV2 869 aa17.04■□□□□ 0.32
CUX1-210ENST00000497815 C14orf93Q9H972 538 aaKnown RBP17.04■□□□□ 0.32
CUX1-210ENST00000497815 ZNF335Q9H4Z2 1342 aaPredicted RBP17.03■□□□□ 0.32
CUX1-210ENST00000497815 TMEM132EQ6IEE7 984 aa17.03■□□□□ 0.32
CUX1-210ENST00000497815 SETD1AO15047 1707 aaKnown RBP17.01■□□□□ 0.31
CUX1-210ENST00000497815 LAMC1P11047 1609 aa17.01■□□□□ 0.31
CUX1-210ENST00000497815 NBPF1Q3BBV0 1214 aa17■□□□□ 0.31
CUX1-210ENST00000497815 STK26Q9P289 416 aa17■□□□□ 0.31
CUX1-210ENST00000497815 ASXL1Q8IXJ9 1541 aa17■□□□□ 0.31
CUX1-210ENST00000497815 PTPRUQ92729 1446 aa16.99■□□□□ 0.31
CUX1-210ENST00000497815 AMOTL2Q9Y2J4 779 aa16.99■□□□□ 0.31
CUX1-210ENST00000497815 KCNA6P17658 529 aa16.98■□□□□ 0.31
CUX1-210ENST00000497815 PIK3R4Q99570 1358 aa16.98■□□□□ 0.31
CUX1-210ENST00000497815 TRPM1Q7Z4N2 1603 aa16.97■□□□□ 0.31
CUX1-210ENST00000497815 ROCK2O75116 1388 aaKnown RBP16.97■□□□□ 0.31
CUX1-210ENST00000497815 KIAA1210Q9ULL0 1709 aa16.96■□□□□ 0.31
CUX1-210ENST00000497815 ADGRB1O14514 1584 aa16.96■□□□□ 0.31
CUX1-210ENST00000497815 YTHDC2Q9H6S0 1430 aaKnown RBP16.96■□□□□ 0.3
CUX1-210ENST00000497815 STRCP1A6NGW2 1772 aa16.95■□□□□ 0.3
CUX1-210ENST00000497815 NWD1Q149M9 1564 aa16.94■□□□□ 0.3
CUX1-210ENST00000497815 RALGAPBQ86X10 1494 aa16.94■□□□□ 0.3
CUX1-210ENST00000497815 CHD2O14647 1828 aaKnown RBP16.94■□□□□ 0.3
CUX1-210ENST00000497815 LRPPRCP42704 1394 aaKnown RBP16.94■□□□□ 0.3
CUX1-210ENST00000497815 RBM33Q96EV2 1170 aaKnown RBP16.94■□□□□ 0.3
CUX1-210ENST00000497815 TRAK1Q9UPV9 953 aa16.94■□□□□ 0.3
CUX1-210ENST00000497815 XRN1Q8IZH2 1706 aaKnown RBP16.93■□□□□ 0.3
CUX1-210ENST00000497815 PROSER2Q86WR7 435 aaPredicted RBP16.92■□□□□ 0.3
CUX1-210ENST00000497815 CARD11Q9BXL7 1154 aa16.92■□□□□ 0.3
CUX1-210ENST00000497815 LTBP4Q8N2S1 1624 aa16.92■□□□□ 0.3
CUX1-210ENST00000497815 ROBO2Q9HCK4 1378 aa16.91■□□□□ 0.3
CUX1-210ENST00000497815 NKTRP30414 1462 aaKnown RBP16.91■□□□□ 0.3
CUX1-210ENST00000497815 CPS1P31327 1500 aa16.91■□□□□ 0.3
CUX1-210ENST00000497815 ABCC11Q96J66 1382 aa16.9■□□□□ 0.3
CUX1-210ENST00000497815 LRRC7Q96NW7 1537 aa16.89■□□□□ 0.29
CUX1-210ENST00000497815 TECPR2O15040 1411 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 SAFB2Q14151 953 aaKnown RBP eCLIP16.88■□□□□ 0.29
CUX1-210ENST00000497815 WAPLQ7Z5K2 1190 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 C14orf37Q86TY3 774 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 PRAM1Q96QH2 718 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 TMEM94Q12767 1356 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 GPRASP1Q5JY77 1395 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 PLEKHH1Q9ULM0 1364 aa16.88■□□□□ 0.29
CUX1-210ENST00000497815 PTCH1Q13635 1447 aa16.87■□□□□ 0.29
CUX1-210ENST00000497815 KNDC1Q76NI1 1749 aa16.87■□□□□ 0.29
CUX1-210ENST00000497815 POGKQ9P215 609 aa16.87■□□□□ 0.29
CUX1-210ENST00000497815 DLC1Q96QB1 1528 aa16.86■□□□□ 0.29
CUX1-210ENST00000497815 ZEB1P37275 1124 aaPredicted RBP16.85■□□□□ 0.29
CUX1-210ENST00000497815 FAM135BQ49AJ0 1406 aa16.84■□□□□ 0.29
CUX1-210ENST00000497815 ARHGEF28Q8N1W1 1705 aaKnown RBP16.84■□□□□ 0.29
CUX1-210ENST00000497815 SIRT1Q96EB6 747 aa16.83■□□□□ 0.28
CUX1-210ENST00000497815 EIF3AQ14152 1382 aaKnown RBP16.82■□□□□ 0.28
CUX1-210ENST00000497815 CERKQ8TCT0 537 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms