RNA–Protein interactions for RNA: ENST00000497470.1

SCAMP3-209, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 5

Gene SCAMP3, Length 845 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-209ENST00000497470 LMTK3Q96Q04 1460 aa28.46■■■□□ 2.15
SCAMP3-209ENST00000497470 ZEB1P37275 1124 aaPredicted RBP28.46■■■□□ 2.15
SCAMP3-209ENST00000497470 L3MBTL2Q969R5 705 aa28.46■■■□□ 2.15
SCAMP3-209ENST00000497470 NEXMIFQ5QGS0 1516 aa28.46■■■□□ 2.15
SCAMP3-209ENST00000497470 RGL3Q3MIN7 710 aa28.44■■■□□ 2.14
SCAMP3-209ENST00000497470 ZNF326Q5BKZ1 582 aaKnown RBP28.44■■■□□ 2.14
SCAMP3-209ENST00000497470 RIMS2Q9UQ26 1411 aa28.43■■■□□ 2.14
SCAMP3-209ENST00000497470 IFT172Q9UG01 1749 aa28.43■■■□□ 2.14
SCAMP3-209ENST00000497470 MYO5BQ9ULV0 1848 aa28.43■■■□□ 2.14
SCAMP3-209ENST00000497470 NRXN1Q9ULB1 1477 aa28.42■■■□□ 2.14
SCAMP3-209ENST00000497470 EID1Q9Y6B2 187 aa28.42■■■□□ 2.14
SCAMP3-209ENST00000497470 PPLO60437 1756 aa28.42■■■□□ 2.14
SCAMP3-209ENST00000497470 ANKLE2Q86XL3 938 aa28.39■■■□□ 2.14
SCAMP3-209ENST00000497470 DCAF11Q8TEB1 546 aa28.38■■■□□ 2.13
SCAMP3-209ENST00000497470 PPP1R15AO75807 674 aaPredicted RBP28.37■■■□□ 2.13
SCAMP3-209ENST00000497470 SCAF11Q99590 1463 aaKnown RBP28.37■■■□□ 2.13
SCAMP3-209ENST00000497470 MED14O60244 1454 aa28.36■■■□□ 2.13
SCAMP3-209ENST00000497470 TXNDC2Q86VQ3 553 aa28.35■■■□□ 2.13
SCAMP3-209ENST00000497470 PLEKHG1Q9ULL1 1385 aa28.35■■■□□ 2.13
SCAMP3-209ENST00000497470 LTKP29376 864 aa28.32■■■□□ 2.12
SCAMP3-209ENST00000497470 PIK3C2GO75747 1445 aa28.32■■■□□ 2.12
SCAMP3-209ENST00000497470 PRAG1Q86YV5 1406 aa28.32■■■□□ 2.12
SCAMP3-209ENST00000497470 SETBP1Q9Y6X0 1596 aa28.3■■■□□ 2.12
SCAMP3-209ENST00000497470 ADGRF5Q8IZF2 1346 aa28.28■■■□□ 2.12
SCAMP3-209ENST00000497470 AEBP2Q6ZN18 517 aaPredicted RBP28.28■■■□□ 2.12
SCAMP3-209ENST00000497470 KIAA1210Q9ULL0 1709 aa28.26■■■□□ 2.12
SCAMP3-209ENST00000497470 POLR1AO95602 1720 aaPredicted RBP28.26■■■□□ 2.11
SCAMP3-209ENST00000497470 C14orf93Q9H972 538 aaKnown RBP28.25■■■□□ 2.11
SCAMP3-209ENST00000497470 KDM2AQ9Y2K7 1162 aa28.25■■■□□ 2.11
SCAMP3-209ENST00000497470 LAMC1P11047 1609 aa28.25■■■□□ 2.11
SCAMP3-209ENST00000497470 DIP2AQ14689 1571 aa28.24■■■□□ 2.11
SCAMP3-209ENST00000497470 TBX22Q9Y458 520 aa28.23■■■□□ 2.11
SCAMP3-209ENST00000497470 NPHP4O75161 1426 aaPredicted RBP28.22■■■□□ 2.11
SCAMP3-209ENST00000497470 DMRT2Q9Y5R5 561 aa28.21■■■□□ 2.11
SCAMP3-209ENST00000497470 PIK3R4Q99570 1358 aa28.21■■■□□ 2.11
SCAMP3-209ENST00000497470 HSPA2P54652 639 aa28.2■■■□□ 2.1
SCAMP3-209ENST00000497470 ADAMTS13Q76LX8 1427 aa28.18■■■□□ 2.1
SCAMP3-209ENST00000497470 NBPF8Q3BBV2 869 aa28.18■■■□□ 2.1
SCAMP3-209ENST00000497470 GPRASP1Q5JY77 1395 aa28.18■■■□□ 2.1
SCAMP3-209ENST00000497470 NRXN3Q9Y4C0 1643 aa28.18■■■□□ 2.1
SCAMP3-209ENST00000497470 RALGAPBQ86X10 1494 aa28.17■■■□□ 2.1
SCAMP3-209ENST00000497470 ALKQ9UM73 1620 aa28.17■■■□□ 2.1
SCAMP3-209ENST00000497470 STRCQ7RTU9 1775 aa28.16■■■□□ 2.1
SCAMP3-209ENST00000497470 IQGAP1P46940 1657 aa28.15■■■□□ 2.1
SCAMP3-209ENST00000497470 NCKAP5LQ9HCH0 1330 aa28.15■■■□□ 2.1
SCAMP3-209ENST00000497470 TRPM1Q7Z4N2 1603 aa28.14■■■□□ 2.1
SCAMP3-209ENST00000497470 NUTM2DQ5VT03 806 aaPredicted RBP28.14■■■□□ 2.1
SCAMP3-209ENST00000497470 CFAP70Q5T0N1 1121 aa28.11■■■□□ 2.09
SCAMP3-209ENST00000497470 SETD1AO15047 1707 aaKnown RBP28.11■■■□□ 2.09
SCAMP3-209ENST00000497470 ADGRB1O14514 1584 aa28.09■■■□□ 2.09
SCAMP3-209ENST00000497470 SIRT1Q96EB6 747 aa28.06■■■□□ 2.08
SCAMP3-209ENST00000497470 BCANQ96GW7 911 aa28.06■■■□□ 2.08
SCAMP3-209ENST00000497470 ROCK2O75116 1388 aaKnown RBP28.06■■■□□ 2.08
SCAMP3-209ENST00000497470 ABCC11Q96J66 1382 aa28.05■■■□□ 2.08
SCAMP3-209ENST00000497470 LRPPRCP42704 1394 aaKnown RBP28.04■■■□□ 2.08
SCAMP3-209ENST00000497470 TECPR2O15040 1411 aa28.03■■■□□ 2.08
SCAMP3-209ENST00000497470 METP08581 1390 aa28.02■■■□□ 2.08
SCAMP3-209ENST00000497470 SLC26A8Q96RN1 970 aa28.02■■■□□ 2.08
SCAMP3-209ENST00000497470 ASXL1Q8IXJ9 1541 aa28.02■■■□□ 2.08
SCAMP3-209ENST00000497470 NBPF1Q3BBV0 1214 aa28.01■■■□□ 2.07
SCAMP3-209ENST00000497470 YTHDC2Q9H6S0 1430 aaKnown RBP28.01■■■□□ 2.07
SCAMP3-209ENST00000497470 DLC1Q96QB1 1528 aa27.99■■■□□ 2.07
SCAMP3-209ENST00000497470 KCNA6P17658 529 aa27.98■■■□□ 2.07
SCAMP3-209ENST00000497470 CARD11Q9BXL7 1154 aa27.98■■■□□ 2.07
SCAMP3-209ENST00000497470 NWD1Q149M9 1564 aa27.97■■■□□ 2.07
SCAMP3-209ENST00000497470 CHD2O14647 1828 aaKnown RBP27.97■■■□□ 2.07
SCAMP3-209ENST00000497470 FAM135BQ49AJ0 1406 aa27.96■■■□□ 2.07
SCAMP3-209ENST00000497470 KNDC1Q76NI1 1749 aa27.95■■■□□ 2.07
SCAMP3-209ENST00000497470 PTCH1Q13635 1447 aa27.95■■■□□ 2.07
SCAMP3-209ENST00000497470 SLC24A1O60721 1099 aa27.95■■■□□ 2.06
SCAMP3-209ENST00000497470 EIF3AQ14152 1382 aaKnown RBP27.94■■■□□ 2.06
SCAMP3-209ENST00000497470 XRN1Q8IZH2 1706 aaKnown RBP27.93■■■□□ 2.06
SCAMP3-209ENST00000497470 TMEM132EQ6IEE7 984 aa27.93■■■□□ 2.06
SCAMP3-209ENST00000497470 NKTRP30414 1462 aaKnown RBP27.93■■■□□ 2.06
SCAMP3-209ENST00000497470 PTPRUQ92729 1446 aa27.92■■■□□ 2.06
SCAMP3-209ENST00000497470 CPS1P31327 1500 aa27.92■■■□□ 2.06
SCAMP3-209ENST00000497470 AMOTL2Q9Y2J4 779 aa27.92■■■□□ 2.06
SCAMP3-209ENST00000497470 NCOA3Q9Y6Q9 1424 aa27.9■■■□□ 2.06
SCAMP3-209ENST00000497470 EIF4G2P78344 907 aaKnown RBP eCLIP27.88■■■□□ 2.05
SCAMP3-209ENST00000497470 SBNO2Q9Y2G9 1366 aa27.87■■■□□ 2.05
SCAMP3-209ENST00000497470 USP47Q96K76 1375 aa27.86■■■□□ 2.05
SCAMP3-209ENST00000497470 TRAK1Q9UPV9 953 aa27.83■■■□□ 2.05
SCAMP3-209ENST00000497470 ARHGEF28Q8N1W1 1705 aaKnown RBP27.82■■■□□ 2.04
SCAMP3-209ENST00000497470 ROBO2Q9HCK4 1378 aa27.81■■■□□ 2.04
SCAMP3-209ENST00000497470 SENP3Q9H4L4 574 aaPredicted RBP27.8■■■□□ 2.04
SCAMP3-209ENST00000497470 STK26Q9P289 416 aa27.8■■■□□ 2.04
SCAMP3-209ENST00000497470 CENPJQ9HC77 1338 aaPredicted RBP27.8■■■□□ 2.04
SCAMP3-209ENST00000497470 PRAM1Q96QH2 718 aa27.76■■■□□ 2.03
SCAMP3-209ENST00000497470 POGKQ9P215 609 aa27.75■■■□□ 2.03
SCAMP3-209ENST00000497470 ZNF335Q9H4Z2 1342 aaPredicted RBP27.74■■■□□ 2.03
SCAMP3-209ENST00000497470 STRCP1A6NGW2 1772 aa27.74■■■□□ 2.03
SCAMP3-209ENST00000497470 ST20-MTHFSA0A0A6YYL1 179 aa27.74■■■□□ 2.03
SCAMP3-209ENST00000497470 PUS7Q96PZ0 661 aaKnown RBP27.74■■■□□ 2.03
SCAMP3-209ENST00000497470 HSPA5P11021 654 aaKnown RBP27.73■■■□□ 2.03
SCAMP3-209ENST00000497470 TESK2Q96S53 571 aa27.73■■■□□ 2.03
SCAMP3-209ENST00000497470 LTBP4Q8N2S1 1624 aa27.72■■■□□ 2.03
SCAMP3-209ENST00000497470 PROSER2Q86WR7 435 aaPredicted RBP27.72■■■□□ 2.03
SCAMP3-209ENST00000497470 ADGRB2O60241 1585 aa27.71■■■□□ 2.03
SCAMP3-209ENST00000497470 LRRC7Q96NW7 1537 aa27.7■■■□□ 2.02
SCAMP3-209ENST00000497470 WAPLQ7Z5K2 1190 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms