RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 METTL3Q86U44 580 aaKnown RBP9.01□□□□□ -0.97
SMC4-225ENST00000497203 PXYLP1Q8TE99 480 aa9.01□□□□□ -0.97
SMC4-225ENST00000497203 IRF6O14896 467 aa9□□□□□ -0.97
SMC4-225ENST00000497203 OATP04181 439 aa9□□□□□ -0.97
SMC4-225ENST00000497203 MINK1Q8N4C8 1332 aaPredicted RBP9□□□□□ -0.97
SMC4-225ENST00000497203 RCCD1A6NED2 376 aa8.99□□□□□ -0.97
SMC4-225ENST00000497203 SAMD7Q7Z3H4 446 aa8.99□□□□□ -0.97
SMC4-225ENST00000497203 CCDC102AQ96A19 550 aa8.99□□□□□ -0.97
SMC4-225ENST00000497203 PHOX2BQ99453 314 aa8.99□□□□□ -0.97
SMC4-225ENST00000497203 SWT1Q5T5J6 900 aaKnown RBP8.97□□□□□ -0.97
SMC4-225ENST00000497203 KRI1Q8N9T8 703 aaKnown RBP8.97□□□□□ -0.97
SMC4-225ENST00000497203 NLRP7Q8WX94 980 aa8.97□□□□□ -0.97
SMC4-225ENST00000497203 TSR3Q9UJK0 312 aaKnown RBP8.97□□□□□ -0.97
SMC4-225ENST00000497203 DNAJB2P25686 324 aa8.96□□□□□ -0.98
SMC4-225ENST00000497203 TPRNQ4KMQ1 711 aa8.96□□□□□ -0.98
SMC4-225ENST00000497203 LRCH3Q96II8 777 aa8.96□□□□□ -0.98
SMC4-225ENST00000497203 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.96□□□□□ -0.98
SMC4-225ENST00000497203 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.95□□□□□ -0.98
SMC4-225ENST00000497203 LOC100996750A0A140TA64 210 aa8.95□□□□□ -0.98
SMC4-225ENST00000497203 KRTAP4-6Q9BYQ5 205 aa8.95□□□□□ -0.98
SMC4-225ENST00000497203 TMEM134Q9H6X4 195 aa8.95□□□□□ -0.98
SMC4-225ENST00000497203 PRKCSHP14314 528 aaPredicted RBP8.94□□□□□ -0.98
SMC4-225ENST00000497203 HPS5Q9UPZ3 1129 aa8.94□□□□□ -0.98
SMC4-225ENST00000497203 HDGFP51858 240 aaKnown RBP8.92□□□□□ -0.98
SMC4-225ENST00000497203 SLC24A3Q9HC58 644 aa8.92□□□□□ -0.98
SMC4-225ENST00000497203 RNF40O75150 1001 aa8.91□□□□□ -0.98
SMC4-225ENST00000497203 NRG2O14511 850 aaPredicted RBP8.89□□□□□ -0.99
SMC4-225ENST00000497203 MDM2Q00987 491 aaPredicted RBP8.89□□□□□ -0.99
SMC4-225ENST00000497203 SLF2Q8IX21 1173 aa8.89□□□□□ -0.99
SMC4-225ENST00000497203 AK7Q96M32 723 aa8.89□□□□□ -0.99
SMC4-225ENST00000497203 DAXXQ9UER7 740 aaPredicted RBP8.89□□□□□ -0.99
SMC4-225ENST00000497203 TJAP1Q5JTD0 557 aa8.88□□□□□ -0.99
SMC4-225ENST00000497203 TRIM66O15016 1216 aa8.87□□□□□ -0.99
SMC4-225ENST00000497203 PPP4CP60510 307 aa8.87□□□□□ -0.99
SMC4-225ENST00000497203 SLC10A3P09131 477 aa8.86□□□□□ -0.99
SMC4-225ENST00000497203 REPIN1Q9BWE0 567 aaKnown RBP8.86□□□□□ -0.99
SMC4-225ENST00000497203 SLC4A3P48751 1232 aa8.85□□□□□ -0.99
SMC4-225ENST00000497203 AMHR2Q16671 573 aa8.85□□□□□ -0.99
SMC4-225ENST00000497203 PRKD2Q9BZL6 878 aa8.85□□□□□ -0.99
SMC4-225ENST00000497203 DDX11L8A8MPP1 907 aa8.84□□□□□ -0.99
SMC4-225ENST00000497203 TMUB1Q9BVT8 246 aa8.84□□□□□ -0.99
SMC4-225ENST00000497203 V9GY48 417 aaPredicted RBP8.84□□□□□ -0.99
SMC4-225ENST00000497203 CLCN1P35523 988 aa8.83□□□□□ -1
SMC4-225ENST00000497203 APLP1P51693 650 aa8.83□□□□□ -1
SMC4-225ENST00000497203 GPCPD1Q9NPB8 672 aa8.83□□□□□ -1
SMC4-225ENST00000497203 TTLL12Q14166 644 aaPredicted RBP8.82□□□□□ -1
SMC4-225ENST00000497203 MTRQ99707 1265 aa8.82□□□□□ -1
SMC4-225ENST00000497203 CFHP08603 1231 aa8.81□□□□□ -1
SMC4-225ENST00000497203 PDE4DQ08499 809 aa8.81□□□□□ -1
SMC4-225ENST00000497203 PARP9Q8IXQ6 854 aa8.81□□□□□ -1
SMC4-225ENST00000497203 RDH13Q8NBN7 331 aa8.81□□□□□ -1
SMC4-225ENST00000497203 NECTIN2Q92692 538 aa8.81□□□□□ -1
SMC4-225ENST00000497203 IL21Q9HBE4 155 aa8.81□□□□□ -1
SMC4-225ENST00000497203 PPP1R18Q6NYC8 613 aa8.8□□□□□ -1
SMC4-225ENST00000497203 SULF1Q8IWU6 871 aa8.8□□□□□ -1
SMC4-225ENST00000497203 FAM217BQ9NTX9 383 aaPredicted RBP8.8□□□□□ -1
SMC4-225ENST00000497203 CD46P15529 392 aa8.79□□□□□ -1
SMC4-225ENST00000497203 GIGYF2Q6Y7W6 1299 aaKnown RBP8.79□□□□□ -1
SMC4-225ENST00000497203 RSPH4AQ5TD94 716 aa8.78□□□□□ -1
SMC4-225ENST00000497203 SSTR3P32745 418 aaPredicted RBP8.77□□□□□ -1.01
SMC4-225ENST00000497203 KMT5BQ4FZB7 885 aa8.77□□□□□ -1.01
SMC4-225ENST00000497203 LCE2AQ5TA79 106 aaPredicted RBP8.77□□□□□ -1.01
SMC4-225ENST00000497203 GCGRP47871 477 aa8.76□□□□□ -1.01
SMC4-225ENST00000497203 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.76□□□□□ -1.01
SMC4-225ENST00000497203 ACTN4O43707 911 aaKnown RBP8.75□□□□□ -1.01
SMC4-225ENST00000497203 ZNF516Q92618 1163 aa8.75□□□□□ -1.01
SMC4-225ENST00000497203 PRR14Q9BWN1 585 aa8.75□□□□□ -1.01
SMC4-225ENST00000497203 MS4A1P11836 297 aa8.74□□□□□ -1.01
SMC4-225ENST00000497203 COPS2P61201 443 aa8.73□□□□□ -1.01
SMC4-225ENST00000497203 GPBP1L1Q9HC44 474 aaPredicted RBP8.73□□□□□ -1.01
SMC4-225ENST00000497203 PDZRN3Q9UPQ7 1066 aa8.73□□□□□ -1.01
SMC4-225ENST00000497203 PCDHB3Q9Y5E6 796 aa8.73□□□□□ -1.01
SMC4-225ENST00000497203 FUT2Q10981 343 aa8.72□□□□□ -1.01
SMC4-225ENST00000497203 BLOC1S3Q6QNY0 202 aa8.72□□□□□ -1.01
SMC4-225ENST00000497203 PUS10Q3MIT2 529 aaKnown RBP8.71□□□□□ -1.02
SMC4-225ENST00000497203 TREML4Q6UXN2 200 aa8.71□□□□□ -1.02
SMC4-225ENST00000497203 KDM4AO75164 1064 aa8.7□□□□□ -1.02
SMC4-225ENST00000497203 BEGAINQ9BUH8 593 aa8.7□□□□□ -1.02
SMC4-225ENST00000497203 NKX2-3Q8TAU0 364 aa8.69□□□□□ -1.02
SMC4-225ENST00000497203 KDM4CQ9H3R0 1056 aa8.69□□□□□ -1.02
SMC4-225ENST00000497203 POTECB2RU33 542 aa8.68□□□□□ -1.02
SMC4-225ENST00000497203 ATP6V1AP38606 617 aa8.68□□□□□ -1.02
SMC4-225ENST00000497203 MORN1Q5T089 497 aa8.68□□□□□ -1.02
SMC4-225ENST00000497203 GGCXP38435 758 aa8.67□□□□□ -1.02
SMC4-225ENST00000497203 SPIRE2Q8WWL2 714 aa8.67□□□□□ -1.02
SMC4-225ENST00000497203 HLA-CQ95604 372 aa8.67□□□□□ -1.02
SMC4-225ENST00000497203 HOXA2O43364 376 aa8.66□□□□□ -1.02
SMC4-225ENST00000497203 ZPR1O75312 459 aa8.66□□□□□ -1.02
SMC4-225ENST00000497203 BRPF1P55201 1214 aaPredicted RBP8.66□□□□□ -1.02
SMC4-225ENST00000497203 USP46P62068 366 aa8.66□□□□□ -1.02
SMC4-225ENST00000497203 NEUROD2Q15784 382 aa8.66□□□□□ -1.02
SMC4-225ENST00000497203 NUTM1Q86Y26 1132 aa8.66□□□□□ -1.02
SMC4-225ENST00000497203 SCUBE3Q8IX30 993 aa8.66□□□□□ -1.02
SMC4-225ENST00000497203 TLL1O43897 1013 aa8.65□□□□□ -1.02
SMC4-225ENST00000497203 NR1I2O75469 434 aa8.65□□□□□ -1.02
SMC4-225ENST00000497203 TRIM67Q6ZTA4 783 aa8.65□□□□□ -1.02
SMC4-225ENST00000497203 SLC27A5Q9Y2P5 690 aa8.65□□□□□ -1.02
SMC4-225ENST00000497203 GUCA2AQ02747 115 aa8.64□□□□□ -1.03
SMC4-225ENST00000497203 TBC1D2Q9BYX2 928 aa8.64□□□□□ -1.03
SMC4-225ENST00000497203 FAM117AQ9C073 453 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms