RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.42■■■□□ 2.62
C9orf3-222ENST00000496567 EID1Q9Y6B2 187 aa31.42■■■□□ 2.62
C9orf3-222ENST00000496567 ZFYVE9O95405 1425 aa31.41■■■□□ 2.62
C9orf3-222ENST00000496567 HSPA2P54652 639 aa31.4■■■□□ 2.62
C9orf3-222ENST00000496567 TIMELESSQ9UNS1 1208 aa31.4■■■□□ 2.62
C9orf3-222ENST00000496567 NEXMIFQ5QGS0 1516 aa31.4■■■□□ 2.62
C9orf3-222ENST00000496567 STAC3Q96MF2 364 aa31.39■■■□□ 2.61
C9orf3-222ENST00000496567 ANKLE2Q86XL3 938 aa31.38■■■□□ 2.61
C9orf3-222ENST00000496567 L3MBTL2Q969R5 705 aa31.38■■■□□ 2.61
C9orf3-222ENST00000496567 PPLO60437 1756 aa31.37■■■□□ 2.61
C9orf3-222ENST00000496567 VGFO15240 615 aaPredicted RBP31.37■■■□□ 2.61
C9orf3-222ENST00000496567 TXNDC2Q86VQ3 553 aa31.37■■■□□ 2.61
C9orf3-222ENST00000496567 DCAF11Q8TEB1 546 aa31.37■■■□□ 2.61
C9orf3-222ENST00000496567 IFT172Q9UG01 1749 aa31.35■■■□□ 2.61
C9orf3-222ENST00000496567 PPP1R15AO75807 674 aaPredicted RBP31.35■■■□□ 2.61
C9orf3-222ENST00000496567 SCAF11Q99590 1463 aaKnown RBP31.34■■■□□ 2.61
C9orf3-222ENST00000496567 LTKP29376 864 aa31.33■■■□□ 2.61
C9orf3-222ENST00000496567 NUTM2DQ5VT03 806 aaPredicted RBP31.32■■■□□ 2.6
C9orf3-222ENST00000496567 KDM2AQ9Y2K7 1162 aa31.31■■■□□ 2.6
C9orf3-222ENST00000496567 MYOM2P54296 1465 aa31.31■■■□□ 2.6
C9orf3-222ENST00000496567 POLR1AO95602 1720 aaPredicted RBP31.29■■■□□ 2.6
C9orf3-222ENST00000496567 NCKAP5LQ9HCH0 1330 aa31.26■■■□□ 2.59
C9orf3-222ENST00000496567 PLEKHG1Q9ULL1 1385 aa31.26■■■□□ 2.59
C9orf3-222ENST00000496567 ADGRF5Q8IZF2 1346 aa31.25■■■□□ 2.59
C9orf3-222ENST00000496567 MED14O60244 1454 aa31.24■■■□□ 2.59
C9orf3-222ENST00000496567 NRXN1Q9ULB1 1477 aa31.22■■■□□ 2.59
C9orf3-222ENST00000496567 BCANQ96GW7 911 aa31.22■■■□□ 2.59
C9orf3-222ENST00000496567 NPHP4O75161 1426 aaPredicted RBP31.2■■■□□ 2.59
C9orf3-222ENST00000496567 STRCQ7RTU9 1775 aa31.2■■■□□ 2.59
C9orf3-222ENST00000496567 PIK3C2GO75747 1445 aa31.19■■■□□ 2.58
C9orf3-222ENST00000496567 PRAG1Q86YV5 1406 aa31.17■■■□□ 2.58
C9orf3-222ENST00000496567 SETBP1Q9Y6X0 1596 aa31.17■■■□□ 2.58
C9orf3-222ENST00000496567 IQGAP1P46940 1657 aa31.16■■■□□ 2.58
C9orf3-222ENST00000496567 DMRT2Q9Y5R5 561 aa31.15■■■□□ 2.58
C9orf3-222ENST00000496567 SENP3Q9H4L4 574 aaPredicted RBP31.14■■■□□ 2.58
C9orf3-222ENST00000496567 NRXN3Q9Y4C0 1643 aa31.12■■■□□ 2.57
C9orf3-222ENST00000496567 ZEB1P37275 1124 aaPredicted RBP31.1■■■□□ 2.57
C9orf3-222ENST00000496567 ADAMTS13Q76LX8 1427 aa31.1■■■□□ 2.57
C9orf3-222ENST00000496567 C14orf93Q9H972 538 aaKnown RBP31.1■■■□□ 2.57
C9orf3-222ENST00000496567 DIP2AQ14689 1571 aa31.1■■■□□ 2.57
C9orf3-222ENST00000496567 SLC26A8Q96RN1 970 aa31.09■■■□□ 2.57
C9orf3-222ENST00000496567 TBX22Q9Y458 520 aa31.09■■■□□ 2.57
C9orf3-222ENST00000496567 LAMC1P11047 1609 aa31.09■■■□□ 2.57
C9orf3-222ENST00000496567 ALKQ9UM73 1620 aa31.09■■■□□ 2.57
C9orf3-222ENST00000496567 NBPF8Q3BBV2 869 aa31.09■■■□□ 2.57
C9orf3-222ENST00000496567 CFAP70Q5T0N1 1121 aa31.07■■■□□ 2.56
C9orf3-222ENST00000496567 KIAA1210Q9ULL0 1709 aa31.06■■■□□ 2.56
C9orf3-222ENST00000496567 SETD1AO15047 1707 aaKnown RBP31.02■■■□□ 2.56
C9orf3-222ENST00000496567 TRPM1Q7Z4N2 1603 aa31.02■■■□□ 2.56
C9orf3-222ENST00000496567 PIK3R4Q99570 1358 aa30.99■■■□□ 2.55
C9orf3-222ENST00000496567 METP08581 1390 aa30.98■■■□□ 2.55
C9orf3-222ENST00000496567 RALGAPBQ86X10 1494 aa30.98■■■□□ 2.55
C9orf3-222ENST00000496567 ROCK2O75116 1388 aaKnown RBP30.96■■■□□ 2.55
C9orf3-222ENST00000496567 NBPF1Q3BBV0 1214 aa30.96■■■□□ 2.55
C9orf3-222ENST00000496567 TMEM132EQ6IEE7 984 aa30.95■■■□□ 2.54
C9orf3-222ENST00000496567 ADGRB1O14514 1584 aa30.94■■■□□ 2.54
C9orf3-222ENST00000496567 ASXL1Q8IXJ9 1541 aa30.93■■■□□ 2.54
C9orf3-222ENST00000496567 GPRASP1Q5JY77 1395 aa30.91■■■□□ 2.54
C9orf3-222ENST00000496567 YTHDC2Q9H6S0 1430 aaKnown RBP30.89■■■□□ 2.54
C9orf3-222ENST00000496567 KCNA6P17658 529 aa30.89■■■□□ 2.54
C9orf3-222ENST00000496567 CHD2O14647 1828 aaKnown RBP30.89■■■□□ 2.54
C9orf3-222ENST00000496567 CARD11Q9BXL7 1154 aa30.88■■■□□ 2.53
C9orf3-222ENST00000496567 AMOTL2Q9Y2J4 779 aa30.88■■■□□ 2.53
C9orf3-222ENST00000496567 LRPPRCP42704 1394 aaKnown RBP30.88■■■□□ 2.53
C9orf3-222ENST00000496567 PTPRUQ92729 1446 aa30.88■■■□□ 2.53
C9orf3-222ENST00000496567 ABCC11Q96J66 1382 aa30.85■■■□□ 2.53
C9orf3-222ENST00000496567 STK26Q9P289 416 aa30.85■■■□□ 2.53
C9orf3-222ENST00000496567 NWD1Q149M9 1564 aa30.84■■■□□ 2.53
C9orf3-222ENST00000496567 XRN1Q8IZH2 1706 aaKnown RBP30.83■■■□□ 2.53
C9orf3-222ENST00000496567 TECPR2O15040 1411 aa30.82■■■□□ 2.52
C9orf3-222ENST00000496567 ZNF335Q9H4Z2 1342 aaPredicted RBP30.82■■■□□ 2.52
C9orf3-222ENST00000496567 TRAK1Q9UPV9 953 aa30.81■■■□□ 2.52
C9orf3-222ENST00000496567 KNDC1Q76NI1 1749 aa30.81■■■□□ 2.52
C9orf3-222ENST00000496567 NKTRP30414 1462 aaKnown RBP30.78■■■□□ 2.52
C9orf3-222ENST00000496567 DLC1Q96QB1 1528 aa30.78■■■□□ 2.52
C9orf3-222ENST00000496567 SIRT1Q96EB6 747 aa30.78■■■□□ 2.52
C9orf3-222ENST00000496567 PTCH1Q13635 1447 aa30.78■■■□□ 2.52
C9orf3-222ENST00000496567 CPS1P31327 1500 aa30.77■■■□□ 2.52
C9orf3-222ENST00000496567 STRCP1A6NGW2 1772 aa30.76■■■□□ 2.51
C9orf3-222ENST00000496567 EIF3AQ14152 1382 aaKnown RBP30.75■■■□□ 2.51
C9orf3-222ENST00000496567 FAM135BQ49AJ0 1406 aa30.75■■■□□ 2.51
C9orf3-222ENST00000496567 ROBO2Q9HCK4 1378 aa30.74■■■□□ 2.51
C9orf3-222ENST00000496567 ARHGEF28Q8N1W1 1705 aaKnown RBP30.72■■■□□ 2.51
C9orf3-222ENST00000496567 PROSER2Q86WR7 435 aaPredicted RBP30.71■■■□□ 2.51
C9orf3-222ENST00000496567 POGKQ9P215 609 aa30.71■■■□□ 2.51
C9orf3-222ENST00000496567 USP47Q96K76 1375 aa30.71■■■□□ 2.51
C9orf3-222ENST00000496567 PRAM1Q96QH2 718 aa30.7■■■□□ 2.5
C9orf3-222ENST00000496567 EIF4G2P78344 907 aaKnown RBP eCLIP30.67■■■□□ 2.5
C9orf3-222ENST00000496567 WAPLQ7Z5K2 1190 aa30.67■■■□□ 2.5
C9orf3-222ENST00000496567 CENPJQ9HC77 1338 aaPredicted RBP30.67■■■□□ 2.5
C9orf3-222ENST00000496567 LTBP4Q8N2S1 1624 aa30.67■■■□□ 2.5
C9orf3-222ENST00000496567 PLEKHH1Q9ULM0 1364 aa30.64■■■□□ 2.5
C9orf3-222ENST00000496567 LRRC7Q96NW7 1537 aa30.64■■■□□ 2.5
C9orf3-222ENST00000496567 NCOA3Q9Y6Q9 1424 aa30.64■■■□□ 2.5
C9orf3-222ENST00000496567 TMEM94Q12767 1356 aa30.63■■■□□ 2.49
C9orf3-222ENST00000496567 SAFB2Q14151 953 aaKnown RBP eCLIP30.62■■■□□ 2.49
C9orf3-222ENST00000496567 ST20-MTHFSA0A0A6YYL1 179 aa30.62■■■□□ 2.49
C9orf3-222ENST00000496567 RBM33Q96EV2 1170 aaKnown RBP30.59■■■□□ 2.49
C9orf3-222ENST00000496567 HSPA5P11021 654 aaKnown RBP30.58■■■□□ 2.49
C9orf3-222ENST00000496567 C14orf37Q86TY3 774 aa30.58■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 200 ms