RNA–Protein interactions for RNA: ENST00000496363.5

USF1-207, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 990 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-207ENST00000496363 IQGAP3Q86VI3 1631 aa20.07■□□□□ 0.8
USF1-207ENST00000496363 ZFYVE9O95405 1425 aa20.07■□□□□ 0.8
USF1-207ENST00000496363 NWD1Q149M9 1564 aa20.07■□□□□ 0.8
USF1-207ENST00000496363 ROCK1Q13464 1354 aa20.07■□□□□ 0.8
USF1-207ENST00000496363 KCNA6P17658 529 aa20.06■□□□□ 0.8
USF1-207ENST00000496363 RBM33Q96EV2 1170 aaKnown RBP20.06■□□□□ 0.8
USF1-207ENST00000496363 RIMS2Q9UQ26 1411 aa20.05■□□□□ 0.8
USF1-207ENST00000496363 BCANQ96GW7 911 aa20.05■□□□□ 0.8
USF1-207ENST00000496363 ITGAEP38570 1179 aa20.04■□□□□ 0.8
USF1-207ENST00000496363 PROSER2Q86WR7 435 aaPredicted RBP20.03■□□□□ 0.8
USF1-207ENST00000496363 NKTRP30414 1462 aaKnown RBP20.03■□□□□ 0.8
USF1-207ENST00000496363 CHD2O14647 1828 aaKnown RBP20.02■□□□□ 0.8
USF1-207ENST00000496363 PLEKHG1Q9ULL1 1385 aa20.01■□□□□ 0.79
USF1-207ENST00000496363 CHGAP10645 457 aaKnown RBP20.01■□□□□ 0.79
USF1-207ENST00000496363 PHF23Q9BUL5 403 aaPredicted RBP20.01■□□□□ 0.79
USF1-207ENST00000496363 ROBO1Q9Y6N7 1651 aa20■□□□□ 0.79
USF1-207ENST00000496363 PPP1R15AO75807 674 aaPredicted RBP20■□□□□ 0.79
USF1-207ENST00000496363 FAM135BQ49AJ0 1406 aa19.99■□□□□ 0.79
USF1-207ENST00000496363 NUP155O75694 1391 aa19.98■□□□□ 0.79
USF1-207ENST00000496363 NUTM2DQ5VT03 806 aaPredicted RBP19.98■□□□□ 0.79
USF1-207ENST00000496363 MSH6P52701 1360 aa19.94■□□□□ 0.78
USF1-207ENST00000496363 ADAMTS13Q76LX8 1427 aa19.93■□□□□ 0.78
USF1-207ENST00000496363 SPHKAPQ2M3C7 1700 aa19.93■□□□□ 0.78
USF1-207ENST00000496363 HDGFP51858 240 aaKnown RBP19.93■□□□□ 0.78
USF1-207ENST00000496363 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.92■□□□□ 0.78
USF1-207ENST00000496363 DIP2AQ14689 1571 aa19.91■□□□□ 0.78
USF1-207ENST00000496363 TBX22Q9Y458 520 aa19.91■□□□□ 0.78
USF1-207ENST00000496363 PHLPP1O60346 1717 aa19.89■□□□□ 0.77
USF1-207ENST00000496363 RGS17Q9UGC6 210 aaPredicted RBP19.89■□□□□ 0.77
USF1-207ENST00000496363 SLAIN2Q9P270 581 aa19.87■□□□□ 0.77
USF1-207ENST00000496363 NRXN3Q9Y4C0 1643 aa19.87■□□□□ 0.77
USF1-207ENST00000496363 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.86■□□□□ 0.77
USF1-207ENST00000496363 TRPM2O94759 1503 aa19.86■□□□□ 0.77
USF1-207ENST00000496363 RRBP1Q9P2E9 1410 aaKnown RBP19.85■□□□□ 0.77
USF1-207ENST00000496363 PTPRUQ92729 1446 aa19.85■□□□□ 0.77
USF1-207ENST00000496363 CLTCL1P53675 1640 aa19.84■□□□□ 0.77
USF1-207ENST00000496363 C14orf37Q86TY3 774 aa19.84■□□□□ 0.77
USF1-207ENST00000496363 PIK3R4Q99570 1358 aa19.83■□□□□ 0.77
USF1-207ENST00000496363 COL16A1Q07092 1604 aaPredicted RBP19.82■□□□□ 0.76
USF1-207ENST00000496363 NAIPQ13075 1403 aa19.82■□□□□ 0.76
USF1-207ENST00000496363 NCOA3Q9Y6Q9 1424 aa19.82■□□□□ 0.76
USF1-207ENST00000496363 SETBP1Q9Y6X0 1596 aa19.81■□□□□ 0.76
USF1-207ENST00000496363 XRN1Q8IZH2 1706 aaKnown RBP19.81■□□□□ 0.76
USF1-207ENST00000496363 ZNF326Q5BKZ1 582 aaKnown RBP19.8■□□□□ 0.76
USF1-207ENST00000496363 AMOTL2Q9Y2J4 779 aa19.8■□□□□ 0.76
USF1-207ENST00000496363 KIF1BO60333 1816 aa19.79■□□□□ 0.76
USF1-207ENST00000496363 NEXMIFQ5QGS0 1516 aa19.78■□□□□ 0.76
USF1-207ENST00000496363 POTEAQ6S8J7 498 aa19.77■□□□□ 0.76
USF1-207ENST00000496363 JCADQ9P266 1359 aa19.77■□□□□ 0.76
USF1-207ENST00000496363 ATF3P18847 181 aa19.76■□□□□ 0.75
USF1-207ENST00000496363 C19orf44Q9H6X5 657 aa19.76■□□□□ 0.75
USF1-207ENST00000496363 METP08581 1390 aa19.75■□□□□ 0.75
USF1-207ENST00000496363 CADPS2Q86UW7 1296 aa19.75■□□□□ 0.75
USF1-207ENST00000496363 AHDC1Q5TGY3 1603 aaPredicted RBP19.75■□□□□ 0.75
USF1-207ENST00000496363 LRP6O75581 1613 aa19.72■□□□□ 0.75
USF1-207ENST00000496363 HFM1A2PYH4 1435 aa19.71■□□□□ 0.75
USF1-207ENST00000496363 TRIM52Q96A61 297 aa19.71■□□□□ 0.75
USF1-207ENST00000496363 SHPRHQ149N8 1683 aa19.71■□□□□ 0.75
USF1-207ENST00000496363 SETD1AO15047 1707 aaKnown RBP19.7■□□□□ 0.74
USF1-207ENST00000496363 NALCNQ8IZF0 1738 aa19.7■□□□□ 0.74
USF1-207ENST00000496363 DCCP43146 1447 aa19.69■□□□□ 0.74
USF1-207ENST00000496363 BRINP3Q76B58 766 aa19.69■□□□□ 0.74
USF1-207ENST00000496363 ASXL1Q8IXJ9 1541 aa19.68■□□□□ 0.74
USF1-207ENST00000496363 MST1RQ04912 1400 aa19.68■□□□□ 0.74
USF1-207ENST00000496363 NHSL1Q5SYE7 1610 aa19.66■□□□□ 0.74
USF1-207ENST00000496363 ADGRL3Q9HAR2 1447 aa19.66■□□□□ 0.74
USF1-207ENST00000496363 PPLO60437 1756 aa19.65■□□□□ 0.74
USF1-207ENST00000496363 SLC4A1APQ9BWU0 796 aaKnown RBP19.65■□□□□ 0.74
USF1-207ENST00000496363 SPATA31A6Q5VVP1 1343 aa19.64■□□□□ 0.73
USF1-207ENST00000496363 FOXD1Q16676 465 aa19.62■□□□□ 0.73
USF1-207ENST00000496363 MEX3CQ5U5Q3 659 aaKnown RBP19.62■□□□□ 0.73
USF1-207ENST00000496363 DDX17Q92841 729 aaKnown RBP19.6■□□□□ 0.73
USF1-207ENST00000496363 PTCH1Q13635 1447 aa19.59■□□□□ 0.73
USF1-207ENST00000496363 ROBO2Q9HCK4 1378 aa19.59■□□□□ 0.73
USF1-207ENST00000496363 VGFO15240 615 aaPredicted RBP19.59■□□□□ 0.73
USF1-207ENST00000496363 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
USF1-207ENST00000496363 NUTM2BA6NNL0 878 aaPredicted RBP19.58■□□□□ 0.72
USF1-207ENST00000496363 NUTM2EB1AL46 878 aaPredicted RBP19.58■□□□□ 0.72
USF1-207ENST00000496363 NUTM2AQ8IVF1 878 aaPredicted RBP19.58■□□□□ 0.72
USF1-207ENST00000496363 RPGRIP1LQ68CZ1 1315 aa19.56■□□□□ 0.72
USF1-207ENST00000496363 C1orf167Q5SNV9 1468 aa19.55■□□□□ 0.72
USF1-207ENST00000496363 IFT172Q9UG01 1749 aa19.54■□□□□ 0.72
USF1-207ENST00000496363 PRAG1Q86YV5 1406 aa19.54■□□□□ 0.72
USF1-207ENST00000496363 ZNF772Q68DY9 489 aaPredicted RBP19.54■□□□□ 0.72
USF1-207ENST00000496363 LAMC1P11047 1609 aa19.52■□□□□ 0.72
USF1-207ENST00000496363 PNPLA6Q8IY17 1366 aa19.52■□□□□ 0.72
USF1-207ENST00000496363 CCDC144AA2RUR9 1427 aa19.51■□□□□ 0.71
USF1-207ENST00000496363 LRRC59Q96AG4 307 aaKnown RBP19.51■□□□□ 0.71
USF1-207ENST00000496363 SPATA31E1Q6ZUB1 1445 aa19.51■□□□□ 0.71
USF1-207ENST00000496363 ADGRF5Q8IZF2 1346 aa19.51■□□□□ 0.71
USF1-207ENST00000496363 ORAI2Q96SN7 254 aa19.5■□□□□ 0.71
USF1-207ENST00000496363 MPHOSPH9Q99550 1183 aa19.5■□□□□ 0.71
USF1-207ENST00000496363 AFF2P51816 1311 aa19.5■□□□□ 0.71
USF1-207ENST00000496363 RGL3Q3MIN7 710 aa19.49■□□□□ 0.71
USF1-207ENST00000496363 CDC42BPGQ6DT37 1551 aa19.46■□□□□ 0.71
USF1-207ENST00000496363 RXRBP28702 533 aa19.45■□□□□ 0.7
USF1-207ENST00000496363 C8orf37Q96NL8 207 aa19.45■□□□□ 0.7
USF1-207ENST00000496363 STK26Q9P289 416 aa19.45■□□□□ 0.7
USF1-207ENST00000496363 KNDC1Q76NI1 1749 aa19.45■□□□□ 0.7
USF1-207ENST00000496363 SOS2Q07890 1332 aaPredicted RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms