RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PLA2R1Q13018 1463 aa12.52□□□□□ -0.41
SYNE1-230ENST00000495090 WDR7Q9Y4E6 1490 aa12.52□□□□□ -0.41
SYNE1-230ENST00000495090 SYNMO15061 1565 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 BECN1Q14457 450 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 WDR43Q15061 677 aaKnown RBP eCLIP12.51□□□□□ -0.41
SYNE1-230ENST00000495090 NBPF1Q3BBV0 1214 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 NGEFQ8N5V2 710 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 USP19O94966 1318 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 PLXNC1O60486 1568 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 MAST1Q9Y2H9 1570 aa12.51□□□□□ -0.41
SYNE1-230ENST00000495090 RSPH4AQ5TD94 716 aa12.5□□□□□ -0.41
SYNE1-230ENST00000495090 CARMIL2Q6F5E8 1435 aa12.5□□□□□ -0.41
SYNE1-230ENST00000495090 EIF5BO60841 1220 aaKnown RBP12.5□□□□□ -0.41
SYNE1-230ENST00000495090 PPP2R1AP30153 589 aa12.5□□□□□ -0.41
SYNE1-230ENST00000495090 IQGAP3Q86VI3 1631 aa12.5□□□□□ -0.41
SYNE1-230ENST00000495090 MAGI2Q86UL8 1455 aa12.49□□□□□ -0.41
SYNE1-230ENST00000495090 NLRP1Q9C000 1473 aa12.49□□□□□ -0.41
SYNE1-230ENST00000495090 CGNL1Q0VF96 1302 aa12.49□□□□□ -0.41
SYNE1-230ENST00000495090 PLEKHD1A6NEE1 506 aa12.49□□□□□ -0.41
SYNE1-230ENST00000495090 ASXL1Q8IXJ9 1541 aa12.48□□□□□ -0.41
SYNE1-230ENST00000495090 RGS3P49796 1198 aa12.48□□□□□ -0.41
SYNE1-230ENST00000495090 AAMPQ13685 434 aa12.48□□□□□ -0.41
SYNE1-230ENST00000495090 PDE3AQ14432 1141 aa12.48□□□□□ -0.41
SYNE1-230ENST00000495090 IQGAP1P46940 1657 aa12.47□□□□□ -0.41
SYNE1-230ENST00000495090 AMER1Q5JTC6 1135 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-230ENST00000495090 PREX2Q70Z35 1606 aa12.46□□□□□ -0.41
SYNE1-230ENST00000495090 SAMD9LQ8IVG5 1584 aa12.46□□□□□ -0.41
SYNE1-230ENST00000495090 CDCA8Q53HL2 280 aa12.46□□□□□ -0.42
SYNE1-230ENST00000495090 ANTXR1Q9H6X2 564 aa12.46□□□□□ -0.42
SYNE1-230ENST00000495090 KNSTRNQ9Y448 316 aa12.46□□□□□ -0.42
SYNE1-230ENST00000495090 ATP10BO94823 1461 aa12.46□□□□□ -0.42
SYNE1-230ENST00000495090 E9PSI1 815 aa12.45□□□□□ -0.42
SYNE1-230ENST00000495090 POGKQ9P215 609 aa12.45□□□□□ -0.42
SYNE1-230ENST00000495090 SCAPERQ9BY12 1400 aa12.43□□□□□ -0.42
SYNE1-230ENST00000495090 MADDQ8WXG6 1647 aa12.43□□□□□ -0.42
SYNE1-230ENST00000495090 CDC42BPBQ9Y5S2 1711 aa12.42□□□□□ -0.42
SYNE1-230ENST00000495090 IGHDP01880 384 aa12.42□□□□□ -0.42
SYNE1-230ENST00000495090 RGL3Q3MIN7 710 aa12.42□□□□□ -0.42
SYNE1-230ENST00000495090 CLUAP1Q96AJ1 413 aa12.42□□□□□ -0.42
SYNE1-230ENST00000495090 STAC3Q96MF2 364 aa12.42□□□□□ -0.42
SYNE1-230ENST00000495090 RRAGDQ9NQL2 400 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-230ENST00000495090 MYOM1P52179 1685 aa12.42□□□□□ -0.42
SYNE1-230ENST00000495090 FSD2A1L4K1 749 aa12.41□□□□□ -0.42
SYNE1-230ENST00000495090 HNRNPMP52272 730 aaKnown RBP eCLIP12.41□□□□□ -0.42
SYNE1-230ENST00000495090 TBC1D32Q96NH3 1257 aa12.41□□□□□ -0.42
SYNE1-230ENST00000495090 UPF2Q9HAU5 1272 aaKnown RBP12.41□□□□□ -0.42
SYNE1-230ENST00000495090 DUOX2Q9NRD8 1548 aa12.4□□□□□ -0.42
SYNE1-230ENST00000495090 SCAF11Q99590 1463 aaKnown RBP12.4□□□□□ -0.42
SYNE1-230ENST00000495090 GLIPR1L2Q4G1C9 344 aa12.39□□□□□ -0.43
SYNE1-230ENST00000495090 PMFBP1Q8TBY8 1022 aa12.39□□□□□ -0.43
SYNE1-230ENST00000495090 BCAR3O75815 825 aa12.39□□□□□ -0.43
SYNE1-230ENST00000495090 CLCN1P35523 988 aa12.39□□□□□ -0.43
SYNE1-230ENST00000495090 SEC24BO95487 1268 aa12.38□□□□□ -0.43
SYNE1-230ENST00000495090 SPINK5Q9NQ38 1064 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-230ENST00000495090 ISY1Q9ULR0 285 aaKnown RBP12.38□□□□□ -0.43
SYNE1-230ENST00000495090 CENPJQ9HC77 1338 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-230ENST00000495090 SPHKAPQ2M3C7 1700 aa12.38□□□□□ -0.43
SYNE1-230ENST00000495090 GOLGA6L3A6NEY3 463 aa12.37□□□□□ -0.43
SYNE1-230ENST00000495090 TTC37Q6PGP7 1564 aa12.37□□□□□ -0.43
SYNE1-230ENST00000495090 KDM5AP29375 1690 aaKnown RBP12.37□□□□□ -0.43
SYNE1-230ENST00000495090 KIAA1210Q9ULL0 1709 aa12.37□□□□□ -0.43
SYNE1-230ENST00000495090 APAF1O14727 1248 aa12.37□□□□□ -0.43
SYNE1-230ENST00000495090 PIAS4Q8N2W9 510 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-230ENST00000495090 JPH4Q96JJ6 628 aa12.37□□□□□ -0.43
SYNE1-230ENST00000495090 SYCP2Q9BX26 1530 aa12.37□□□□□ -0.43
SYNE1-230ENST00000495090 TBC1D2Q9BYX2 928 aa12.36□□□□□ -0.43
SYNE1-230ENST00000495090 SLKQ9H2G2 1235 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-230ENST00000495090 XRCC6P12956 609 aaKnown RBP eCLIP12.35□□□□□ -0.43
SYNE1-230ENST00000495090 MCM4P33991 863 aa12.35□□□□□ -0.43
SYNE1-230ENST00000495090 NEURL4Q96JN8 1562 aa12.34□□□□□ -0.43
SYNE1-230ENST00000495090 PNNQ9H307 717 aaKnown RBP12.34□□□□□ -0.43
SYNE1-230ENST00000495090 POLR3AO14802 1390 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-230ENST00000495090 TRPM2O94759 1503 aa12.34□□□□□ -0.43
SYNE1-230ENST00000495090 RRP9O43818 475 aaKnown RBP12.33□□□□□ -0.44
SYNE1-230ENST00000495090 MRE11P49959 708 aa12.33□□□□□ -0.44
SYNE1-230ENST00000495090 CCDC146Q8IYE0 955 aa12.33□□□□□ -0.44
SYNE1-230ENST00000495090 CEP152O94986 1710 aa12.33□□□□□ -0.44
SYNE1-230ENST00000495090 CHMP7Q8WUX9 453 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-230ENST00000495090 CHMP5Q9NZZ3 219 aa12.33□□□□□ -0.44
SYNE1-230ENST00000495090 NCBP3Q53F19 620 aaKnown RBP12.32□□□□□ -0.44
SYNE1-230ENST00000495090 COG6Q9Y2V7 657 aa12.32□□□□□ -0.44
SYNE1-230ENST00000495090 KANK1Q14678 1352 aa12.31□□□□□ -0.44
SYNE1-230ENST00000495090 CANXP27824 592 aaKnown RBP12.31□□□□□ -0.44
SYNE1-230ENST00000495090 WWC1Q8IX03 1113 aa12.31□□□□□ -0.44
SYNE1-230ENST00000495090 ERCC6Q03468 1493 aa12.31□□□□□ -0.44
SYNE1-230ENST00000495090 IQSEC2Q5JU85 1478 aa12.31□□□□□ -0.44
SYNE1-230ENST00000495090 RTEL1-TNFRSF6BF6WH68 1400 aa12.31□□□□□ -0.44
SYNE1-230ENST00000495090 PANK1Q8TE04 598 aa12.31□□□□□ -0.44
SYNE1-230ENST00000495090 ARHGAP5Q13017 1502 aa12.3□□□□□ -0.44
SYNE1-230ENST00000495090 DDX11L8A8MPP1 907 aa12.3□□□□□ -0.44
SYNE1-230ENST00000495090 RWDD1Q9H446 243 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-230ENST00000495090 PTPRTO14522 1441 aa12.3□□□□□ -0.44
SYNE1-230ENST00000495090 RARSP54136 660 aaKnown RBP12.29□□□□□ -0.44
SYNE1-230ENST00000495090 PDZRN3Q9UPQ7 1066 aa12.29□□□□□ -0.44
SYNE1-230ENST00000495090 DMRT2Q9Y5R5 561 aa12.29□□□□□ -0.44
SYNE1-230ENST00000495090 SHPRHQ149N8 1683 aa12.29□□□□□ -0.44
SYNE1-230ENST00000495090 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.29□□□□□ -0.44
SYNE1-230ENST00000495090 NCOA3Q9Y6Q9 1424 aa12.29□□□□□ -0.44
SYNE1-230ENST00000495090 TRAK2O60296 914 aa12.28□□□□□ -0.44
SYNE1-230ENST00000495090 HSP90AA1P07900 732 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms