RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 TMF1P82094 1093 aa20.06■□□□□ 0.8
SDF4-207ENST00000494748 USP19O94966 1318 aa20.05■□□□□ 0.8
SDF4-207ENST00000494748 AMER1Q5JTC6 1135 aaPredicted RBP20.05■□□□□ 0.8
SDF4-207ENST00000494748 ABCC2Q92887 1545 aa20.05■□□□□ 0.8
SDF4-207ENST00000494748 FRAT2O75474 233 aaPredicted RBP20.05■□□□□ 0.8
SDF4-207ENST00000494748 TTC37Q6PGP7 1564 aa20.05■□□□□ 0.8
SDF4-207ENST00000494748 EIF3AQ14152 1382 aaKnown RBP20.04■□□□□ 0.8
SDF4-207ENST00000494748 SPHKAPQ2M3C7 1700 aa20.04■□□□□ 0.8
SDF4-207ENST00000494748 SLFN5Q08AF3 891 aa20.04■□□□□ 0.8
SDF4-207ENST00000494748 PIK3C2GO75747 1445 aa20.04■□□□□ 0.8
SDF4-207ENST00000494748 SPINK5Q9NQ38 1064 aaPredicted RBP20.02■□□□□ 0.8
SDF4-207ENST00000494748 NLRP1Q9C000 1473 aa20.02■□□□□ 0.8
SDF4-207ENST00000494748 ASXL1Q8IXJ9 1541 aa20.02■□□□□ 0.8
SDF4-207ENST00000494748 GOLGA2Q08379 1002 aa20.02■□□□□ 0.79
SDF4-207ENST00000494748 CHMP7Q8WUX9 453 aaPredicted RBP20.01■□□□□ 0.79
SDF4-207ENST00000494748 CEP152O94986 1710 aa19.99■□□□□ 0.79
SDF4-207ENST00000494748 NKTRP30414 1462 aaKnown RBP19.99■□□□□ 0.79
SDF4-207ENST00000494748 RGS3P49796 1198 aa19.97■□□□□ 0.79
SDF4-207ENST00000494748 RSPH4AQ5TD94 716 aa19.97■□□□□ 0.79
SDF4-207ENST00000494748 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.96■□□□□ 0.793e-6■■■□□ 17.9
SDF4-207ENST00000494748 DUOX2Q9NRD8 1548 aa19.96■□□□□ 0.79
SDF4-207ENST00000494748 IGHDP01880 384 aa19.96■□□□□ 0.79
SDF4-207ENST00000494748 WDR43Q15061 677 aaKnown RBP eCLIP19.96■□□□□ 0.79
SDF4-207ENST00000494748 NPC1L1Q9UHC9 1359 aa19.95■□□□□ 0.78
SDF4-207ENST00000494748 DAXXQ9UER7 740 aaPredicted RBP19.95■□□□□ 0.78
SDF4-207ENST00000494748 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.94■□□□□ 0.78
SDF4-207ENST00000494748 KDM5AP29375 1690 aaKnown RBP19.94■□□□□ 0.78
SDF4-207ENST00000494748 BCAR3O75815 825 aa19.94■□□□□ 0.78
SDF4-207ENST00000494748 KNSTRNQ9Y448 316 aa19.93■□□□□ 0.78
SDF4-207ENST00000494748 ARHGAP5Q13017 1502 aa19.93■□□□□ 0.78
SDF4-207ENST00000494748 DMRT2Q9Y5R5 561 aa19.93■□□□□ 0.78
SDF4-207ENST00000494748 SEC24BO95487 1268 aa19.92■□□□□ 0.78
SDF4-207ENST00000494748 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.92■□□□□ 0.786e-9■■□□□ 12.6
SDF4-207ENST00000494748 SCAPERQ9BY12 1400 aa19.91■□□□□ 0.78
SDF4-207ENST00000494748 KIAA1210Q9ULL0 1709 aa19.91■□□□□ 0.78
SDF4-207ENST00000494748 CCDC146Q8IYE0 955 aa19.91■□□□□ 0.78
SDF4-207ENST00000494748 SCAF11Q99590 1463 aaKnown RBP19.91■□□□□ 0.78
SDF4-207ENST00000494748 SHPRHQ149N8 1683 aa19.9■□□□□ 0.78
SDF4-207ENST00000494748 ERCC6Q03468 1493 aa19.9■□□□□ 0.78
SDF4-207ENST00000494748 CLTCL1P53675 1640 aa19.9■□□□□ 0.78
SDF4-207ENST00000494748 TRPM2O94759 1503 aa19.9■□□□□ 0.78
SDF4-207ENST00000494748 FAM43AQ8N2R8 423 aa19.89■□□□□ 0.77
SDF4-207ENST00000494748 FBLN2P98095 1184 aa19.88■□□□□ 0.77
SDF4-207ENST00000494748 APAF1O14727 1248 aa19.87■□□□□ 0.77
SDF4-207ENST00000494748 POGKQ9P215 609 aa19.86■□□□□ 0.77
SDF4-207ENST00000494748 ANTXR1Q9H6X2 564 aa19.86■□□□□ 0.77
SDF4-207ENST00000494748 UBE2Q2Q8WVN8 375 aa19.84■□□□□ 0.77
SDF4-207ENST00000494748 E9PSI1 815 aa19.84■□□□□ 0.77
SDF4-207ENST00000494748 PDE3AQ14432 1141 aa19.83■□□□□ 0.76
SDF4-207ENST00000494748 DEPDC5O75140 1603 aa19.83■□□□□ 0.76
SDF4-207ENST00000494748 NINLQ9Y2I6 1382 aa19.82■□□□□ 0.76
SDF4-207ENST00000494748 ERVK-7P63135 1459 aa19.82■□□□□ 0.76
SDF4-207ENST00000494748 PTPRTO14522 1441 aa19.82■□□□□ 0.76
SDF4-207ENST00000494748 CGNL1Q0VF96 1302 aa19.81■□□□□ 0.76
SDF4-207ENST00000494748 CLUAP1Q96AJ1 413 aa19.8■□□□□ 0.76
SDF4-207ENST00000494748 MAPK8IP3Q9UPT6 1336 aa19.8■□□□□ 0.76
SDF4-207ENST00000494748 ABCA6Q8N139 1617 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 SHROOM2Q13796 1616 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 IFT172Q9UG01 1749 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 IQSEC2Q5JU85 1478 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 MYO3AQ8NEV4 1616 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 CDCA8Q53HL2 280 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 PANK1Q8TE04 598 aa19.79■□□□□ 0.76
SDF4-207ENST00000494748 ABCC1P33527 1531 aa19.78■□□□□ 0.76
SDF4-207ENST00000494748 ZMYM3Q14202 1370 aa19.77■□□□□ 0.76
SDF4-207ENST00000494748 CARD14Q9BXL6 1004 aa19.77■□□□□ 0.76
SDF4-207ENST00000494748 NEURL4Q96JN8 1562 aa19.77■□□□□ 0.76
SDF4-207ENST00000494748 TET3O43151 1660 aa19.77■□□□□ 0.76
SDF4-207ENST00000494748 COG6Q9Y2V7 657 aa19.76■□□□□ 0.75
SDF4-207ENST00000494748 RRAGDQ9NQL2 400 aaPredicted RBP19.76■□□□□ 0.75
SDF4-207ENST00000494748 MAP3K4Q9Y6R4 1608 aa19.76■□□□□ 0.75
SDF4-207ENST00000494748 RSPH6AQ9H0K4 717 aa19.75■□□□□ 0.75
SDF4-207ENST00000494748 WWC1Q8IX03 1113 aa19.75■□□□□ 0.75
SDF4-207ENST00000494748 CENPJQ9HC77 1338 aaPredicted RBP19.75■□□□□ 0.75
SDF4-207ENST00000494748 TBC1D32Q96NH3 1257 aa19.74■□□□□ 0.75
SDF4-207ENST00000494748 RTEL1-TNFRSF6BF6WH68 1400 aa19.74■□□□□ 0.75
SDF4-207ENST00000494748 POLR3AO14802 1390 aaPredicted RBP19.74■□□□□ 0.75
SDF4-207ENST00000494748 NGEFQ8N5V2 710 aa19.74■□□□□ 0.75
SDF4-207ENST00000494748 SLKQ9H2G2 1235 aaPredicted RBP19.73■□□□□ 0.75
SDF4-207ENST00000494748 ZC3H13Q5T200 1668 aaKnown RBP19.73■□□□□ 0.75
SDF4-207ENST00000494748 VWDEQ8N2E2 1590 aa19.73■□□□□ 0.75
SDF4-207ENST00000494748 PCDHB15Q9Y5E8 787 aa19.73■□□□□ 0.75
SDF4-207ENST00000494748 TRAPPC8Q9Y2L5 1435 aa19.72■□□□□ 0.75
SDF4-207ENST00000494748 RLBP1P12271 317 aa19.71■□□□□ 0.75
SDF4-207ENST00000494748 BECN1Q14457 450 aa19.71■□□□□ 0.75
SDF4-207ENST00000494748 PHF23Q9BUL5 403 aaPredicted RBP19.71■□□□□ 0.75
SDF4-207ENST00000494748 TBC1D2Q9BYX2 928 aa19.71■□□□□ 0.75
SDF4-207ENST00000494748 TNNQ9UQP3 1299 aa19.71■□□□□ 0.75
SDF4-207ENST00000494748 ZFYVE16Q7Z3T8 1539 aa19.71■□□□□ 0.75
SDF4-207ENST00000494748 PLCH2O75038 1416 aa19.7■□□□□ 0.74
SDF4-207ENST00000494748 RARSP54136 660 aaKnown RBP19.69■□□□□ 0.74
SDF4-207ENST00000494748 STAC3Q96MF2 364 aa19.69■□□□□ 0.74
SDF4-207ENST00000494748 MROH2AA6NES4 1674 aa19.69■□□□□ 0.74
SDF4-207ENST00000494748 MYOM2P54296 1465 aa19.69■□□□□ 0.74
SDF4-207ENST00000494748 CHD1O14646 1710 aa19.69■□□□□ 0.74
SDF4-207ENST00000494748 EIF5BO60841 1220 aaKnown RBP19.68■□□□□ 0.74
SDF4-207ENST00000494748 FSD2A1L4K1 749 aa19.68■□□□□ 0.74
SDF4-207ENST00000494748 ERCC6L2Q5T890 1561 aa19.67■□□□□ 0.74
SDF4-207ENST00000494748 PDZRN3Q9UPQ7 1066 aa19.66■□□□□ 0.74
SDF4-207ENST00000494748 USP32Q8NFA0 1604 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms