RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 STAG3Q9UJ98 1225 aa17.92■□□□□ 0.46
VTI1A-208ENST00000494728 CHD2O14647 1828 aaKnown RBP17.91■□□□□ 0.46
VTI1A-208ENST00000494728 EID1Q9Y6B2 187 aa17.91■□□□□ 0.46
VTI1A-208ENST00000494728 MED1Q15648 1581 aaPredicted RBP17.9■□□□□ 0.46
VTI1A-208ENST00000494728 TOM1O60784 492 aa17.89■□□□□ 0.45
VTI1A-208ENST00000494728 SLC52A1Q9NWF4 448 aa17.89■□□□□ 0.45
VTI1A-208ENST00000494728 RIMS2Q9UQ26 1411 aa17.88■□□□□ 0.45
VTI1A-208ENST00000494728 SLC26A8Q96RN1 970 aa17.87■□□□□ 0.45
VTI1A-208ENST00000494728 NUP155O75694 1391 aa17.87■□□□□ 0.45
VTI1A-208ENST00000494728 NKTRP30414 1462 aaKnown RBP17.85■□□□□ 0.45
VTI1A-208ENST00000494728 CLTCL1P53675 1640 aa17.84■□□□□ 0.45
VTI1A-208ENST00000494728 NRXN3Q9Y4C0 1643 aa17.84■□□□□ 0.45
VTI1A-208ENST00000494728 TMEM94Q12767 1356 aa17.84■□□□□ 0.45
VTI1A-208ENST00000494728 PLEKHG1Q9ULL1 1385 aa17.84■□□□□ 0.45
VTI1A-208ENST00000494728 NAIPQ13075 1403 aa17.83■□□□□ 0.45
VTI1A-208ENST00000494728 RBM33Q96EV2 1170 aaKnown RBP17.82■□□□□ 0.44
VTI1A-208ENST00000494728 ROBO1Q9Y6N7 1651 aa17.82■□□□□ 0.44
VTI1A-208ENST00000494728 ADAMTS13Q76LX8 1427 aa17.81■□□□□ 0.44
VTI1A-208ENST00000494728 DIP2AQ14689 1571 aa17.8■□□□□ 0.44
VTI1A-208ENST00000494728 TRPM2O94759 1503 aa17.79■□□□□ 0.44
VTI1A-208ENST00000494728 KCNA6P17658 529 aa17.79■□□□□ 0.44
VTI1A-208ENST00000494728 NUTM2DQ5VT03 806 aaPredicted RBP17.79■□□□□ 0.44
VTI1A-208ENST00000494728 CHGAP10645 457 aaKnown RBP17.78■□□□□ 0.44
VTI1A-208ENST00000494728 KIF1BO60333 1816 aa17.77■□□□□ 0.44
VTI1A-208ENST00000494728 XRN1Q8IZH2 1706 aaKnown RBP17.76■□□□□ 0.43
VTI1A-208ENST00000494728 HFM1A2PYH4 1435 aa17.75■□□□□ 0.43
VTI1A-208ENST00000494728 PPP1R15AO75807 674 aaPredicted RBP17.75■□□□□ 0.43
VTI1A-208ENST00000494728 NEXMIFQ5QGS0 1516 aa17.75■□□□□ 0.43
VTI1A-208ENST00000494728 SETBP1Q9Y6X0 1596 aa17.74■□□□□ 0.43
VTI1A-208ENST00000494728 BCANQ96GW7 911 aa17.74■□□□□ 0.43
VTI1A-208ENST00000494728 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.74■□□□□ 0.43
VTI1A-208ENST00000494728 PROSER2Q86WR7 435 aaPredicted RBP17.73■□□□□ 0.43
VTI1A-208ENST00000494728 PTPRUQ92729 1446 aa17.72■□□□□ 0.43
VTI1A-208ENST00000494728 SETD1AO15047 1707 aaKnown RBP17.72■□□□□ 0.43
VTI1A-208ENST00000494728 FAM135BQ49AJ0 1406 aa17.72■□□□□ 0.43
VTI1A-208ENST00000494728 PHLPP1O60346 1717 aa17.7■□□□□ 0.42
VTI1A-208ENST00000494728 SOCS7O14512 581 aa17.69■□□□□ 0.42
VTI1A-208ENST00000494728 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.69■□□□□ 0.42
VTI1A-208ENST00000494728 TBX22Q9Y458 520 aa17.69■□□□□ 0.42
VTI1A-208ENST00000494728 PPLO60437 1756 aa17.68■□□□□ 0.42
VTI1A-208ENST00000494728 COL16A1Q07092 1604 aaPredicted RBP17.68■□□□□ 0.42
VTI1A-208ENST00000494728 MSH6P52701 1360 aa17.67■□□□□ 0.42
VTI1A-208ENST00000494728 NALCNQ8IZF0 1738 aa17.67■□□□□ 0.42
VTI1A-208ENST00000494728 PIK3R4Q99570 1358 aa17.66■□□□□ 0.42
VTI1A-208ENST00000494728 HDGFP51858 240 aaKnown RBP17.65■□□□□ 0.42
VTI1A-208ENST00000494728 IFT172Q9UG01 1749 aa17.63■□□□□ 0.41
VTI1A-208ENST00000494728 METP08581 1390 aa17.63■□□□□ 0.41
VTI1A-208ENST00000494728 NCOA3Q9Y6Q9 1424 aa17.62■□□□□ 0.41
VTI1A-208ENST00000494728 ZNF326Q5BKZ1 582 aaKnown RBP17.61■□□□□ 0.41
VTI1A-208ENST00000494728 TRIM52Q96A61 297 aa17.6■□□□□ 0.41
VTI1A-208ENST00000494728 AMOTL2Q9Y2J4 779 aa17.6■□□□□ 0.41
VTI1A-208ENST00000494728 AHDC1Q5TGY3 1603 aaPredicted RBP17.6■□□□□ 0.41
VTI1A-208ENST00000494728 SLAIN2Q9P270 581 aa17.59■□□□□ 0.41
VTI1A-208ENST00000494728 FOXD1Q16676 465 aa17.58■□□□□ 0.4
VTI1A-208ENST00000494728 NHSL1Q5SYE7 1610 aa17.58■□□□□ 0.4
VTI1A-208ENST00000494728 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
VTI1A-208ENST00000494728 RGS17Q9UGC6 210 aaPredicted RBP17.57■□□□□ 0.4
VTI1A-208ENST00000494728 SHPRHQ149N8 1683 aa17.57■□□□□ 0.4
VTI1A-208ENST00000494728 DCCP43146 1447 aa17.55■□□□□ 0.4
VTI1A-208ENST00000494728 C14orf37Q86TY3 774 aa17.55■□□□□ 0.4
VTI1A-208ENST00000494728 LRP6O75581 1613 aa17.54■□□□□ 0.4
VTI1A-208ENST00000494728 ASXL1Q8IXJ9 1541 aa17.54■□□□□ 0.4
VTI1A-208ENST00000494728 MST1RQ04912 1400 aa17.54■□□□□ 0.4
VTI1A-208ENST00000494728 ADGRL3Q9HAR2 1447 aa17.54■□□□□ 0.4
VTI1A-208ENST00000494728 C19orf44Q9H6X5 657 aa17.53■□□□□ 0.4
VTI1A-208ENST00000494728 SPATA31E1Q6ZUB1 1445 aa17.52■□□□□ 0.4
VTI1A-208ENST00000494728 PTCH1Q13635 1447 aa17.51■□□□□ 0.39
VTI1A-208ENST00000494728 PRAG1Q86YV5 1406 aa17.5■□□□□ 0.39
VTI1A-208ENST00000494728 CADPS2Q86UW7 1296 aa17.5■□□□□ 0.39
VTI1A-208ENST00000494728 ROBO2Q9HCK4 1378 aa17.5■□□□□ 0.39
VTI1A-208ENST00000494728 JCADQ9P266 1359 aa17.5■□□□□ 0.39
VTI1A-208ENST00000494728 CCDC144AA2RUR9 1427 aa17.49■□□□□ 0.39
VTI1A-208ENST00000494728 ATF3P18847 181 aa17.49■□□□□ 0.39
VTI1A-208ENST00000494728 BRINP3Q76B58 766 aa17.49■□□□□ 0.39
VTI1A-208ENST00000494728 LAMC1P11047 1609 aa17.47■□□□□ 0.39
VTI1A-208ENST00000494728 KNDC1Q76NI1 1749 aa17.47■□□□□ 0.39
VTI1A-208ENST00000494728 MPHOSPH9Q99550 1183 aa17.46■□□□□ 0.39
VTI1A-208ENST00000494728 POTEAQ6S8J7 498 aa17.45■□□□□ 0.38
VTI1A-208ENST00000494728 SETD5Q9C0A6 1442 aa17.45■□□□□ 0.38
VTI1A-208ENST00000494728 RPGRIP1LQ68CZ1 1315 aa17.45■□□□□ 0.38
VTI1A-208ENST00000494728 ADGRF5Q8IZF2 1346 aa17.45■□□□□ 0.38
VTI1A-208ENST00000494728 VGFO15240 615 aaPredicted RBP17.44■□□□□ 0.38
VTI1A-208ENST00000494728 CDC42BPGQ6DT37 1551 aa17.43■□□□□ 0.38
VTI1A-208ENST00000494728 RAB3GAP2Q9H2M9 1393 aa17.42■□□□□ 0.38
VTI1A-208ENST00000494728 PIK3C2GO75747 1445 aa17.42■□□□□ 0.38
VTI1A-208ENST00000494728 DDX17Q92841 729 aaKnown RBP17.42■□□□□ 0.38
VTI1A-208ENST00000494728 C1orf167Q5SNV9 1468 aa17.41■□□□□ 0.38
VTI1A-208ENST00000494728 RGL3Q3MIN7 710 aa17.4■□□□□ 0.38
VTI1A-208ENST00000494728 TECPR2O15040 1411 aa17.38■□□□□ 0.37
VTI1A-208ENST00000494728 NRXN1Q9ULB1 1477 aa17.38■□□□□ 0.37
VTI1A-208ENST00000494728 SPATA31A6Q5VVP1 1343 aa17.38■□□□□ 0.37
VTI1A-208ENST00000494728 FMN2Q9NZ56 1722 aa17.38■□□□□ 0.37
VTI1A-208ENST00000494728 ANKRD30BQ9BXX2 1392 aa17.37■□□□□ 0.37
VTI1A-208ENST00000494728 RGPD8O14715 1765 aaPredicted RBP17.36■□□□□ 0.37
VTI1A-208ENST00000494728 PLEKHH1Q9ULM0 1364 aa17.36■□□□□ 0.37
VTI1A-208ENST00000494728 MYOM2P54296 1465 aa17.36■□□□□ 0.37
VTI1A-208ENST00000494728 PNPLA6Q8IY17 1366 aa17.35■□□□□ 0.37
VTI1A-208ENST00000494728 LRPPRCP42704 1394 aaKnown RBP17.34■□□□□ 0.37
VTI1A-208ENST00000494728 ORAI2Q96SN7 254 aa17.34■□□□□ 0.37
VTI1A-208ENST00000494728 COL22A1Q8NFW1 1626 aaPredicted RBP17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms