RNA–Protein interactions for RNA: ENST00000494268.1

MSL3-217, Transcript of MSL complex subunit 3, humanhuman

TSL 2

Gene MSL3, Length 1,124 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-217ENST00000494268 PARP9Q8IXQ6 854 aa13.01□□□□□ -0.33
MSL3-217ENST00000494268 GPBP1L1Q9HC44 474 aaPredicted RBP13.01□□□□□ -0.33
MSL3-217ENST00000494268 DAXXQ9UER7 740 aaPredicted RBP13.01□□□□□ -0.33
MSL3-217ENST00000494268 MYT1LQ9UL68 1186 aa13.01□□□□□ -0.33
MSL3-217ENST00000494268 KCTD12Q96CX2 325 aaKnown RBP13□□□□□ -0.33
MSL3-217ENST00000494268 CLCN1P35523 988 aa12.99□□□□□ -0.33
MSL3-217ENST00000494268 ANKK1Q8NFD2 765 aa12.99□□□□□ -0.33
MSL3-217ENST00000494268 GPCPD1Q9NPB8 672 aa12.99□□□□□ -0.33
MSL3-217ENST00000494268 BCAMP50895 628 aa12.98□□□□□ -0.33
MSL3-217ENST00000494268 BRPF1P55201 1214 aaPredicted RBP12.98□□□□□ -0.33
MSL3-217ENST00000494268 PLSCR2Q9NRY7 297 aa12.98□□□□□ -0.33
MSL3-217ENST00000494268 NEUROD2Q15784 382 aa12.97□□□□□ -0.33
MSL3-217ENST00000494268 GIGYF2Q6Y7W6 1299 aaKnown RBP12.97□□□□□ -0.33
MSL3-217ENST00000494268 LRCH3Q96II8 777 aa12.97□□□□□ -0.33
MSL3-217ENST00000494268 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.97□□□□□ -0.33
MSL3-217ENST00000494268 SOWAHBA6NEL2 793 aa12.96□□□□□ -0.33
MSL3-217ENST00000494268 RNF40O75150 1001 aa12.96□□□□□ -0.33
MSL3-217ENST00000494268 DDX11L8A8MPP1 907 aa12.95□□□□□ -0.34
MSL3-217ENST00000494268 FAM217BQ9NTX9 383 aaPredicted RBP12.95□□□□□ -0.34
MSL3-217ENST00000494268 SSTR3P32745 418 aaPredicted RBP12.94□□□□□ -0.34
MSL3-217ENST00000494268 SLC10A3P09131 477 aa12.93□□□□□ -0.34
MSL3-217ENST00000494268 THSD4Q6ZMP0 1018 aa12.93□□□□□ -0.34
MSL3-217ENST00000494268 KDM4CQ9H3R0 1056 aa12.93□□□□□ -0.34
MSL3-217ENST00000494268 MS4A1P11836 297 aa12.92□□□□□ -0.34
MSL3-217ENST00000494268 SLF2Q8IX21 1173 aa12.92□□□□□ -0.34
MSL3-217ENST00000494268 HPS5Q9UPZ3 1129 aa12.91□□□□□ -0.34
MSL3-217ENST00000494268 PTPN5P54829 565 aa12.9□□□□□ -0.34
MSL3-217ENST00000494268 MMRN1Q13201 1228 aa12.89□□□□□ -0.35
MSL3-217ENST00000494268 SULF1Q8IWU6 871 aa12.89□□□□□ -0.35
MSL3-217ENST00000494268 RDH13Q8NBN7 331 aa12.89□□□□□ -0.35
MSL3-217ENST00000494268 RNF166Q96A37 237 aaPredicted RBP12.89□□□□□ -0.35
MSL3-217ENST00000494268 SLC4A3P48751 1232 aa12.88□□□□□ -0.35
MSL3-217ENST00000494268 PPP4CP60510 307 aa12.88□□□□□ -0.35
MSL3-217ENST00000494268 WBP1LQ9NX94 342 aa12.88□□□□□ -0.35
MSL3-217ENST00000494268 TSR3Q9UJK0 312 aaKnown RBP12.88□□□□□ -0.35
MSL3-217ENST00000494268 CD46P15529 392 aa12.87□□□□□ -0.35
MSL3-217ENST00000494268 FAM117AQ9C073 453 aa12.85□□□□□ -0.35
MSL3-217ENST00000494268 RSPH4AQ5TD94 716 aa12.84□□□□□ -0.35
MSL3-217ENST00000494268 BEGAINQ9BUH8 593 aa12.84□□□□□ -0.35
MSL3-217ENST00000494268 CFHP08603 1231 aa12.82□□□□□ -0.36
MSL3-217ENST00000494268 GCGRP47871 477 aa12.82□□□□□ -0.36
MSL3-217ENST00000494268 APLP1P51693 650 aa12.81□□□□□ -0.36
MSL3-217ENST00000494268 IL27Q8NEV9 243 aa12.81□□□□□ -0.36
MSL3-217ENST00000494268 PLEKHG3A1L390 1219 aa12.78□□□□□ -0.36
MSL3-217ENST00000494268 NECTIN2Q92692 538 aa12.77□□□□□ -0.37
MSL3-217ENST00000494268 HCSTQ9UBK5 93 aa12.76□□□□□ -0.37
MSL3-217ENST00000494268 KDM4AO75164 1064 aa12.75□□□□□ -0.37
MSL3-217ENST00000494268 KMT5BQ4FZB7 885 aa12.75□□□□□ -0.37
MSL3-217ENST00000494268 SPIRE2Q8WWL2 714 aa12.75□□□□□ -0.37
MSL3-217ENST00000494268 ACTN4O43707 911 aaKnown RBP12.74□□□□□ -0.37
MSL3-217ENST00000494268 FUT2Q10981 343 aa12.74□□□□□ -0.37
MSL3-217ENST00000494268 NUTM1Q86Y26 1132 aa12.74□□□□□ -0.37
MSL3-217ENST00000494268 DDRGK1Q96HY6 314 aa12.74□□□□□ -0.37
MSL3-217ENST00000494268 TBC1D2Q9BYX2 928 aa12.73□□□□□ -0.37
MSL3-217ENST00000494268 PUS10Q3MIT2 529 aaKnown RBP12.72□□□□□ -0.37
MSL3-217ENST00000494268 NYAP1Q6ZVC0 841 aa12.71□□□□□ -0.37
MSL3-217ENST00000494268 HLA-CQ95604 372 aa12.7□□□□□ -0.38
MSL3-217ENST00000494268 PRR14Q9BWN1 585 aa12.7□□□□□ -0.38
MSL3-217ENST00000494268 NDUFV2P19404 249 aa12.68□□□□□ -0.38
MSL3-217ENST00000494268 ATP6V1AP38606 617 aa12.68□□□□□ -0.38
MSL3-217ENST00000494268 PCDHB3Q9Y5E6 796 aa12.68□□□□□ -0.38
MSL3-217ENST00000494268 MOXD2PA6NHM9 499 aa12.67□□□□□ -0.38
MSL3-217ENST00000494268 HOXA2O43364 376 aa12.67□□□□□ -0.38
MSL3-217ENST00000494268 MYSM1Q5VVJ2 828 aa12.67□□□□□ -0.38
MSL3-217ENST00000494268 BLOC1S3Q6QNY0 202 aa12.67□□□□□ -0.38
MSL3-217ENST00000494268 COPS2P61201 443 aa12.66□□□□□ -0.38
MSL3-217ENST00000494268 USP46P62068 366 aa12.66□□□□□ -0.38
MSL3-217ENST00000494268 GUCA2AQ02747 115 aa12.66□□□□□ -0.38
MSL3-217ENST00000494268 POLR3EQ9NVU0 708 aa12.66□□□□□ -0.38
MSL3-217ENST00000494268 MORN1Q5T089 497 aa12.65□□□□□ -0.38
MSL3-217ENST00000494268 RSPH6AQ9H0K4 717 aa12.64□□□□□ -0.39
MSL3-217ENST00000494268 DIXDC1Q155Q3 683 aa12.63□□□□□ -0.39
MSL3-217ENST00000494268 GRIPAP1Q4V328 841 aa12.63□□□□□ -0.39
MSL3-217ENST00000494268 TJAP1Q5JTD0 557 aa12.63□□□□□ -0.39
MSL3-217ENST00000494268 RIC3Q7Z5B4 369 aa12.63□□□□□ -0.39
MSL3-217ENST00000494268 MTRQ99707 1265 aa12.63□□□□□ -0.39
MSL3-217ENST00000494268 SLC27A5Q9Y2P5 690 aa12.63□□□□□ -0.39
MSL3-217ENST00000494268 SCUBE3Q8IX30 993 aa12.62□□□□□ -0.39
MSL3-217ENST00000494268 PCDHGC3Q9UN70 934 aa12.62□□□□□ -0.39
MSL3-217ENST00000494268 RSBN1LQ6PCB5 846 aaPredicted RBP12.61□□□□□ -0.39
MSL3-217ENST00000494268 ZNF516Q92618 1163 aa12.61□□□□□ -0.39
MSL3-217ENST00000494268 LIMD1Q9UGP4 676 aa12.61□□□□□ -0.39
MSL3-217ENST00000494268 FDX1P10109 184 aa12.6□□□□□ -0.39
MSL3-217ENST00000494268 SKIV2LQ15477 1246 aaKnown RBP12.6□□□□□ -0.39
MSL3-217ENST00000494268 SH3D19Q5HYK7 790 aa12.6□□□□□ -0.39
MSL3-217ENST00000494268 PROCA1Q8NCQ7 364 aaPredicted RBP12.6□□□□□ -0.39
MSL3-217ENST00000494268 PCDHB15Q9Y5E8 787 aa12.6□□□□□ -0.39
MSL3-217ENST00000494268 SPTLC1O15269 473 aa12.59□□□□□ -0.39
MSL3-217ENST00000494268 NR1I2O75469 434 aa12.57□□□□□ -0.4
MSL3-217ENST00000494268 CSPP1Q1MSJ5 1256 aa12.57□□□□□ -0.4
MSL3-217ENST00000494268 IL21Q9HBE4 155 aa12.57□□□□□ -0.4
MSL3-217ENST00000494268 ZPR1O75312 459 aa12.56□□□□□ -0.4
MSL3-217ENST00000494268 CLK2P49760 499 aaKnown RBP12.56□□□□□ -0.4
MSL3-217ENST00000494268 SYMPKQ92797 1274 aaKnown RBP12.56□□□□□ -0.4
MSL3-217ENST00000494268 TMEM132AQ24JP5 1023 aa12.55□□□□□ -0.4
MSL3-217ENST00000494268 GOPCQ9HD26 462 aa12.55□□□□□ -0.4
MSL3-217ENST00000494268 ATP1B4Q9UN42 357 aaPredicted RBP12.55□□□□□ -0.4
MSL3-217ENST00000494268 GJA5P36382 358 aa12.54□□□□□ -0.4
MSL3-217ENST00000494268 RNF19BQ6ZMZ0 732 aa12.54□□□□□ -0.4
MSL3-217ENST00000494268 NKX2-3Q8TAU0 364 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms