RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 STAC3Q96MF2 364 aa18.13■□□□□ 0.49
VPS52-220ENST00000493674 TNRQ92752 1358 aa18.13■□□□□ 0.49
VPS52-220ENST00000493674 A2ML1A8K2U0 1454 aa18.13■□□□□ 0.49
VPS52-220ENST00000493674 IDI1Q13907 227 aa18.12■□□□□ 0.49
VPS52-220ENST00000493674 SETD1AO15047 1707 aaKnown RBP18.12■□□□□ 0.49
VPS52-220ENST00000493674 ZFYVE9O95405 1425 aa18.1■□□□□ 0.49
VPS52-220ENST00000493674 RGL3Q3MIN7 710 aa18.1■□□□□ 0.49
VPS52-220ENST00000493674 DCAF11Q8TEB1 546 aa18.1■□□□□ 0.49
VPS52-220ENST00000493674 GPRASP1Q5JY77 1395 aa18.09■□□□□ 0.49
VPS52-220ENST00000493674 RPGRIP1LQ68CZ1 1315 aa18.09■□□□□ 0.49
VPS52-220ENST00000493674 SETBP1Q9Y6X0 1596 aa18.08■□□□□ 0.49
VPS52-220ENST00000493674 CEP170BQ9Y4F5 1589 aaPredicted RBP18.08■□□□□ 0.48
VPS52-220ENST00000493674 PIK3C2GO75747 1445 aa18.07■□□□□ 0.48
VPS52-220ENST00000493674 NRXN3Q9Y4C0 1643 aa18.06■□□□□ 0.48
VPS52-220ENST00000493674 SLIT1O75093 1534 aa18.04■□□□□ 0.48
VPS52-220ENST00000493674 CEBPAP49715 358 aaPredicted RBP18.03■□□□□ 0.48
VPS52-220ENST00000493674 KDM2AQ9Y2K7 1162 aa18.03■□□□□ 0.48
VPS52-220ENST00000493674 ARHGAP23Q9P227 1491 aa18.02■□□□□ 0.48
VPS52-220ENST00000493674 ADGRB1O14514 1584 aa18.02■□□□□ 0.48
VPS52-220ENST00000493674 ADGRF5Q8IZF2 1346 aa18■□□□□ 0.47
VPS52-220ENST00000493674 ZNF316A6NFI3 1004 aaPredicted RBP18■□□□□ 0.47
VPS52-220ENST00000493674 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
VPS52-220ENST00000493674 ARHGEF28Q8N1W1 1705 aaKnown RBP18■□□□□ 0.47
VPS52-220ENST00000493674 RIMS2Q9UQ26 1411 aa17.99■□□□□ 0.47
VPS52-220ENST00000493674 ASXL1Q8IXJ9 1541 aa17.99■□□□□ 0.47
VPS52-220ENST00000493674 CHGAP10645 457 aaKnown RBP17.99■□□□□ 0.47
VPS52-220ENST00000493674 ZNF326Q5BKZ1 582 aaKnown RBP17.99■□□□□ 0.47
VPS52-220ENST00000493674 STRCQ7RTU9 1775 aa17.98■□□□□ 0.47
VPS52-220ENST00000493674 ALKQ9UM73 1620 aa17.98■□□□□ 0.47
VPS52-220ENST00000493674 ROCK2O75116 1388 aaKnown RBP17.97■□□□□ 0.47
VPS52-220ENST00000493674 USP47Q96K76 1375 aa17.96■□□□□ 0.47
VPS52-220ENST00000493674 TMEM2Q9UHN6 1383 aa17.96■□□□□ 0.47
VPS52-220ENST00000493674 KNDC1Q76NI1 1749 aa17.96■□□□□ 0.47
VPS52-220ENST00000493674 VGFO15240 615 aaPredicted RBP17.94■□□□□ 0.46
VPS52-220ENST00000493674 NBPF1Q3BBV0 1214 aa17.94■□□□□ 0.46
VPS52-220ENST00000493674 EIF4G2P78344 907 aaKnown RBP eCLIP17.93■□□□□ 0.461e-12■■■■□ 25
VPS52-220ENST00000493674 SCAF11Q99590 1463 aaKnown RBP17.93■□□□□ 0.46
VPS52-220ENST00000493674 QRICH2Q9H0J4 1663 aa17.93■□□□□ 0.46
VPS52-220ENST00000493674 HSPA5P11021 654 aaKnown RBP17.92■□□□□ 0.46
VPS52-220ENST00000493674 C14orf93Q9H972 538 aaKnown RBP17.92■□□□□ 0.46
VPS52-220ENST00000493674 CARD11Q9BXL7 1154 aa17.91■□□□□ 0.46
VPS52-220ENST00000493674 STAG3Q9UJ98 1225 aa17.91■□□□□ 0.46
VPS52-220ENST00000493674 DIP2AQ14689 1571 aa17.91■□□□□ 0.46
VPS52-220ENST00000493674 MED14O60244 1454 aa17.88■□□□□ 0.45
VPS52-220ENST00000493674 CFAP70Q5T0N1 1121 aa17.88■□□□□ 0.45
VPS52-220ENST00000493674 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS52-220ENST00000493674 PLEKHG1Q9ULL1 1385 aa17.87■□□□□ 0.45
VPS52-220ENST00000493674 HSPA2P54652 639 aa17.86■□□□□ 0.45
VPS52-220ENST00000493674 NUTM2DQ5VT03 806 aaPredicted RBP17.85■□□□□ 0.45
VPS52-220ENST00000493674 ADAMTS13Q76LX8 1427 aa17.85■□□□□ 0.45
VPS52-220ENST00000493674 DLC1Q96QB1 1528 aa17.85■□□□□ 0.45
VPS52-220ENST00000493674 THEMISQ8N1K5 641 aaPredicted RBP17.84■□□□□ 0.45
VPS52-220ENST00000493674 CHD2O14647 1828 aaKnown RBP17.84■□□□□ 0.45
VPS52-220ENST00000493674 CPS1P31327 1500 aa17.83■□□□□ 0.45
VPS52-220ENST00000493674 HIRIP3Q9BW71 556 aaPredicted RBP17.83■□□□□ 0.44
VPS52-220ENST00000493674 XRN1Q8IZH2 1706 aaKnown RBP17.83■□□□□ 0.44
VPS52-220ENST00000493674 EIF3AQ14152 1382 aaKnown RBP17.82■□□□□ 0.44
VPS52-220ENST00000493674 HDGFP51858 240 aaKnown RBP17.82■□□□□ 0.44
VPS52-220ENST00000493674 MYOM1P52179 1685 aa17.82■□□□□ 0.44
VPS52-220ENST00000493674 LTKP29376 864 aa17.81■□□□□ 0.44
VPS52-220ENST00000493674 YTHDC2Q9H6S0 1430 aaKnown RBP17.81■□□□□ 0.44
VPS52-220ENST00000493674 SBNO2Q9Y2G9 1366 aa17.8■□□□□ 0.44
VPS52-220ENST00000493674 DMRT2Q9Y5R5 561 aa17.8■□□□□ 0.44
VPS52-220ENST00000493674 CCDC7Q96M83 1385 aa17.79■□□□□ 0.44
VPS52-220ENST00000493674 ST20-MTHFSA0A0A6YYL1 179 aa17.79■□□□□ 0.44
VPS52-220ENST00000493674 TECPR2O15040 1411 aa17.79■□□□□ 0.44
VPS52-220ENST00000493674 TESK2Q96S53 571 aa17.78■□□□□ 0.44
VPS52-220ENST00000493674 WASHC2AQ641Q2 1341 aa17.77■□□□□ 0.44
VPS52-220ENST00000493674 LRPPRCP42704 1394 aaKnown RBP17.77■□□□□ 0.43
VPS52-220ENST00000493674 C11orf95C9JLR9 678 aaPredicted RBP17.76■□□□□ 0.43
VPS52-220ENST00000493674 TXNDC2Q86VQ3 553 aa17.76■□□□□ 0.43
VPS52-220ENST00000493674 TMEM132EQ6IEE7 984 aa17.75■□□□□ 0.43
VPS52-220ENST00000493674 EID1Q9Y6B2 187 aa17.75■□□□□ 0.43
VPS52-220ENST00000493674 METP08581 1390 aa17.75■□□□□ 0.43
VPS52-220ENST00000493674 KIF7Q2M1P5 1343 aa17.74■□□□□ 0.43
VPS52-220ENST00000493674 ABCC11Q96J66 1382 aa17.74■□□□□ 0.43
VPS52-220ENST00000493674 DISP3Q9P2K9 1392 aa17.73■□□□□ 0.43
VPS52-220ENST00000493674 NWD1Q149M9 1564 aa17.73■□□□□ 0.43
VPS52-220ENST00000493674 TULP4Q9NRJ4 1543 aa17.72■□□□□ 0.43
VPS52-220ENST00000493674 ADGRB2O60241 1585 aa17.72■□□□□ 0.43
VPS52-220ENST00000493674 FAM135BQ49AJ0 1406 aa17.71■□□□□ 0.43
VPS52-220ENST00000493674 PTPRUQ92729 1446 aa17.71■□□□□ 0.43
VPS52-220ENST00000493674 CENPJQ9HC77 1338 aaPredicted RBP17.71■□□□□ 0.42
VPS52-220ENST00000493674 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.7■□□□□ 0.42
VPS52-220ENST00000493674 PIK3R4Q99570 1358 aa17.7■□□□□ 0.42
VPS52-220ENST00000493674 NPHP4O75161 1426 aaPredicted RBP17.7■□□□□ 0.42
VPS52-220ENST00000493674 DIEXFQ68CQ4 756 aaKnown RBP17.69■□□□□ 0.42
VPS52-220ENST00000493674 ANKLE2Q86XL3 938 aa17.69■□□□□ 0.42
VPS52-220ENST00000493674 TBX22Q9Y458 520 aa17.69■□□□□ 0.42
VPS52-220ENST00000493674 PTCH1Q13635 1447 aa17.68■□□□□ 0.42
VPS52-220ENST00000493674 TRAK1Q9UPV9 953 aa17.68■□□□□ 0.42
VPS52-220ENST00000493674 STRCP1A6NGW2 1772 aa17.68■□□□□ 0.42
VPS52-220ENST00000493674 NCKAP5LQ9HCH0 1330 aa17.67■□□□□ 0.42
VPS52-220ENST00000493674 SLC24A1O60721 1099 aa17.66■□□□□ 0.42
VPS52-220ENST00000493674 SIRT1Q96EB6 747 aa17.66■□□□□ 0.42
VPS52-220ENST00000493674 LTBP4Q8N2S1 1624 aa17.65■□□□□ 0.42
VPS52-220ENST00000493674 NALCNQ8IZF0 1738 aa17.65■□□□□ 0.42
VPS52-220ENST00000493674 TMF1P82094 1093 aa17.65■□□□□ 0.42
VPS52-220ENST00000493674 SENP3Q9H4L4 574 aaPredicted RBP17.65■□□□□ 0.42
VPS52-220ENST00000493674 TOPAZ1Q8N9V7 1692 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms