RNA–Protein interactions for RNA: ENST00000491421.5

LSM2-213, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM2, Length 820 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-213ENST00000491421 HSPA1LP34931 641 aa12.52□□□□□ -0.41
LSM2-213ENST00000491421 HDGFP51858 240 aaKnown RBP12.52□□□□□ -0.41
LSM2-213ENST00000491421 RIMS2Q9UQ26 1411 aa12.52□□□□□ -0.41
LSM2-213ENST00000491421 KCNA6P17658 529 aa12.51□□□□□ -0.41
LSM2-213ENST00000491421 PLEKHG1Q9ULL1 1385 aa12.51□□□□□ -0.41
LSM2-213ENST00000491421 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.5□□□□□ -0.41
LSM2-213ENST00000491421 NAIPQ13075 1403 aa12.5□□□□□ -0.41
LSM2-213ENST00000491421 TMEM131LA2VDJ0 1609 aa12.5□□□□□ -0.41
LSM2-213ENST00000491421 ALKQ9UM73 1620 aa12.5□□□□□ -0.41
LSM2-213ENST00000491421 TMEM94Q12767 1356 aa12.48□□□□□ -0.41
LSM2-213ENST00000491421 HFM1A2PYH4 1435 aa12.47□□□□□ -0.41
LSM2-213ENST00000491421 NUTM2DQ5VT03 806 aaPredicted RBP12.47□□□□□ -0.41
LSM2-213ENST00000491421 PROSER2Q86WR7 435 aaPredicted RBP12.47□□□□□ -0.41
LSM2-213ENST00000491421 NKTRP30414 1462 aaKnown RBP12.46□□□□□ -0.41
LSM2-213ENST00000491421 NWD1Q149M9 1564 aa12.45□□□□□ -0.42
LSM2-213ENST00000491421 TRIM52Q96A61 297 aa12.45□□□□□ -0.42
LSM2-213ENST00000491421 RBM33Q96EV2 1170 aaKnown RBP12.45□□□□□ -0.42
LSM2-213ENST00000491421 TBX22Q9Y458 520 aa12.45□□□□□ -0.42
LSM2-213ENST00000491421 ILDR2Q71H61 639 aa12.44□□□□□ -0.42
LSM2-213ENST00000491421 MYO5BQ9ULV0 1848 aa12.44□□□□□ -0.42
LSM2-213ENST00000491421 ZNF326Q5BKZ1 582 aaKnown RBP12.43□□□□□ -0.42
LSM2-213ENST00000491421 ADAMTS13Q76LX8 1427 aa12.43□□□□□ -0.42
LSM2-213ENST00000491421 SPHKAPQ2M3C7 1700 aa12.42□□□□□ -0.42
LSM2-213ENST00000491421 MSH6P52701 1360 aa12.42□□□□□ -0.42
LSM2-213ENST00000491421 TRPM2O94759 1503 aa12.42□□□□□ -0.42
LSM2-213ENST00000491421 DIP2AQ14689 1571 aa12.41□□□□□ -0.42
LSM2-213ENST00000491421 SLC4A1APQ9BWU0 796 aaKnown RBP12.41□□□□□ -0.42
LSM2-213ENST00000491421 XIRP1Q702N8 1843 aaKnown RBP12.41□□□□□ -0.42
LSM2-213ENST00000491421 PIK3R4Q99570 1358 aa12.41□□□□□ -0.42
LSM2-213ENST00000491421 FAM135BQ49AJ0 1406 aa12.4□□□□□ -0.42
LSM2-213ENST00000491421 PHF23Q9BUL5 403 aaPredicted RBP12.4□□□□□ -0.42
LSM2-213ENST00000491421 MED1Q15648 1581 aaPredicted RBP12.39□□□□□ -0.43
LSM2-213ENST00000491421 C14orf37Q86TY3 774 aa12.39□□□□□ -0.43
LSM2-213ENST00000491421 CLTCL1P53675 1640 aa12.39□□□□□ -0.43
LSM2-213ENST00000491421 NCOA3Q9Y6Q9 1424 aa12.37□□□□□ -0.43
LSM2-213ENST00000491421 SLAIN2Q9P270 581 aa12.37□□□□□ -0.43
LSM2-213ENST00000491421 AMOTL2Q9Y2J4 779 aa12.37□□□□□ -0.43
LSM2-213ENST00000491421 CHD2O14647 1828 aaKnown RBP12.37□□□□□ -0.43
LSM2-213ENST00000491421 SETBP1Q9Y6X0 1596 aa12.36□□□□□ -0.43
LSM2-213ENST00000491421 PTPRUQ92729 1446 aa12.36□□□□□ -0.43
LSM2-213ENST00000491421 SOCS7O14512 581 aa12.35□□□□□ -0.43
LSM2-213ENST00000491421 NEXMIFQ5QGS0 1516 aa12.35□□□□□ -0.43
LSM2-213ENST00000491421 NRXN3Q9Y4C0 1643 aa12.34□□□□□ -0.43
LSM2-213ENST00000491421 FOXD1Q16676 465 aa12.34□□□□□ -0.43
LSM2-213ENST00000491421 C19orf44Q9H6X5 657 aa12.34□□□□□ -0.43
LSM2-213ENST00000491421 ROBO1Q9Y6N7 1651 aa12.34□□□□□ -0.43
LSM2-213ENST00000491421 METP08581 1390 aa12.33□□□□□ -0.44
LSM2-213ENST00000491421 VGFO15240 615 aaPredicted RBP12.33□□□□□ -0.44
LSM2-213ENST00000491421 ATF3P18847 181 aa12.33□□□□□ -0.44
LSM2-213ENST00000491421 CADPS2Q86UW7 1296 aa12.32□□□□□ -0.44
LSM2-213ENST00000491421 RPGRIP1LQ68CZ1 1315 aa12.32□□□□□ -0.44
LSM2-213ENST00000491421 CCDC144AA2RUR9 1427 aa12.31□□□□□ -0.44
LSM2-213ENST00000491421 MPHOSPH9Q99550 1183 aa12.31□□□□□ -0.44
LSM2-213ENST00000491421 KIF1BO60333 1816 aa12.3□□□□□ -0.44
LSM2-213ENST00000491421 XRN1Q8IZH2 1706 aaKnown RBP12.3□□□□□ -0.44
LSM2-213ENST00000491421 DCCP43146 1447 aa12.29□□□□□ -0.44
LSM2-213ENST00000491421 SETD5Q9C0A6 1442 aa12.29□□□□□ -0.44
LSM2-213ENST00000491421 ACIN1Q9UKV3 1341 aaKnown RBP12.29□□□□□ -0.44
LSM2-213ENST00000491421 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.28□□□□□ -0.44
LSM2-213ENST00000491421 RGL3Q3MIN7 710 aa12.26□□□□□ -0.45
LSM2-213ENST00000491421 JCADQ9P266 1359 aa12.26□□□□□ -0.45
LSM2-213ENST00000491421 PTCH1Q13635 1447 aa12.26□□□□□ -0.45
LSM2-213ENST00000491421 ADGRL3Q9HAR2 1447 aa12.26□□□□□ -0.45
LSM2-213ENST00000491421 PHLPP1O60346 1717 aa12.25□□□□□ -0.45
LSM2-213ENST00000491421 BRINP3Q76B58 766 aa12.25□□□□□ -0.45
LSM2-213ENST00000491421 RAB3GAP2Q9H2M9 1393 aa12.25□□□□□ -0.45
LSM2-213ENST00000491421 SPATA31E1Q6ZUB1 1445 aa12.25□□□□□ -0.45
LSM2-213ENST00000491421 MST1RQ04912 1400 aa12.24□□□□□ -0.45
LSM2-213ENST00000491421 COL16A1Q07092 1604 aaPredicted RBP12.24□□□□□ -0.45
LSM2-213ENST00000491421 ADGRF5Q8IZF2 1346 aa12.24□□□□□ -0.45
LSM2-213ENST00000491421 ANKRD30BQ9BXX2 1392 aa12.24□□□□□ -0.45
LSM2-213ENST00000491421 ROBO2Q9HCK4 1378 aa12.24□□□□□ -0.45
LSM2-213ENST00000491421 AHDC1Q5TGY3 1603 aaPredicted RBP12.23□□□□□ -0.45
LSM2-213ENST00000491421 RGS17Q9UGC6 210 aaPredicted RBP12.23□□□□□ -0.45
LSM2-213ENST00000491421 PPLO60437 1756 aa12.23□□□□□ -0.45
LSM2-213ENST00000491421 ASXL1Q8IXJ9 1541 aa12.22□□□□□ -0.45
LSM2-213ENST00000491421 PRAG1Q86YV5 1406 aa12.22□□□□□ -0.45
LSM2-213ENST00000491421 SETD1AO15047 1707 aaKnown RBP12.22□□□□□ -0.45
LSM2-213ENST00000491421 SPATA31A6Q5VVP1 1343 aa12.21□□□□□ -0.45
LSM2-213ENST00000491421 NALCNQ8IZF0 1738 aa12.2□□□□□ -0.46
LSM2-213ENST00000491421 STK26Q9P289 416 aa12.19□□□□□ -0.46
LSM2-213ENST00000491421 C1orf167Q5SNV9 1468 aa12.19□□□□□ -0.46
LSM2-213ENST00000491421 PIK3C2GO75747 1445 aa12.19□□□□□ -0.46
LSM2-213ENST00000491421 MEX3CQ5U5Q3 659 aaKnown RBP12.18□□□□□ -0.46
LSM2-213ENST00000491421 LRPPRCP42704 1394 aaKnown RBP12.18□□□□□ -0.46
LSM2-213ENST00000491421 POTEAQ6S8J7 498 aa12.17□□□□□ -0.46
LSM2-213ENST00000491421 DDX17Q92841 729 aaKnown RBP12.17□□□□□ -0.46
LSM2-213ENST00000491421 LRP6O75581 1613 aa12.17□□□□□ -0.46
LSM2-213ENST00000491421 TMEM132EQ6IEE7 984 aa12.16□□□□□ -0.46
LSM2-213ENST00000491421 LRRC59Q96AG4 307 aaKnown RBP12.16□□□□□ -0.46
LSM2-213ENST00000491421 TECPR2O15040 1411 aa12.16□□□□□ -0.46
LSM2-213ENST00000491421 IFT172Q9UG01 1749 aa12.16□□□□□ -0.46
LSM2-213ENST00000491421 ABCC11Q96J66 1382 aa12.16□□□□□ -0.46
LSM2-213ENST00000491421 MYOM2P54296 1465 aa12.15□□□□□ -0.46
LSM2-213ENST00000491421 NUTM2BA6NNL0 878 aaPredicted RBP12.15□□□□□ -0.46
LSM2-213ENST00000491421 NUTM2EB1AL46 878 aaPredicted RBP12.15□□□□□ -0.46
LSM2-213ENST00000491421 HRCP23327 699 aa12.15□□□□□ -0.46
LSM2-213ENST00000491421 NUTM2AQ8IVF1 878 aaPredicted RBP12.15□□□□□ -0.46
LSM2-213ENST00000491421 ORAI2Q96SN7 254 aa12.15□□□□□ -0.46
LSM2-213ENST00000491421 SHPRHQ149N8 1683 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms