RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 PPLO60437 1756 aa32.19■■■□□ 2.74
USF3-203ENST00000491165 ZNF326Q5BKZ1 582 aaKnown RBP32.19■■■□□ 2.74
USF3-203ENST00000491165 KDM5AP29375 1690 aaKnown RBP32.17■■■□□ 2.74
USF3-203ENST00000491165 NEXMIFQ5QGS0 1516 aa32.17■■■□□ 2.74
USF3-203ENST00000491165 CEP170BQ9Y4F5 1589 aaPredicted RBP32.16■■■□□ 2.74
USF3-203ENST00000491165 STAG3Q9UJ98 1225 aa32.16■■■□□ 2.74
USF3-203ENST00000491165 NBPF8Q3BBV2 869 aa32.15■■■□□ 2.74
USF3-203ENST00000491165 NUTM2DQ5VT03 806 aaPredicted RBP32.14■■■□□ 2.73
USF3-203ENST00000491165 ZNF142P52746 1687 aaPredicted RBP32.13■■■□□ 2.73
USF3-203ENST00000491165 ADGRF5Q8IZF2 1346 aa32.08■■■□□ 2.73
USF3-203ENST00000491165 PRAG1Q86YV5 1406 aa32.07■■■□□ 2.72
USF3-203ENST00000491165 ZFYVE9O95405 1425 aa32.07■■■□□ 2.72
USF3-203ENST00000491165 UHRF1BP1Q6BDS2 1440 aa32.07■■■□□ 2.72
USF3-203ENST00000491165 MYOM2P54296 1465 aa32.06■■■□□ 2.72
USF3-203ENST00000491165 RPGRIP1LQ68CZ1 1315 aa32.04■■■□□ 2.72
USF3-203ENST00000491165 TMEM2Q9UHN6 1383 aa32.04■■■□□ 2.72
USF3-203ENST00000491165 RIMS2Q9UQ26 1411 aa32.03■■■□□ 2.72
USF3-203ENST00000491165 NRXN1Q9ULB1 1477 aa32.02■■■□□ 2.72
USF3-203ENST00000491165 SENP3Q9H4L4 574 aaPredicted RBP32.02■■■□□ 2.72
USF3-203ENST00000491165 SLIT1O75093 1534 aa31.99■■■□□ 2.71
USF3-203ENST00000491165 TRPM1Q7Z4N2 1603 aa31.99■■■□□ 2.71
USF3-203ENST00000491165 ARHGAP23Q9P227 1491 aa31.98■■■□□ 2.71
USF3-203ENST00000491165 PIK3C2GO75747 1445 aa31.97■■■□□ 2.71
USF3-203ENST00000491165 LTKP29376 864 aa31.97■■■□□ 2.71
USF3-203ENST00000491165 THEMISQ8N1K5 641 aaPredicted RBP31.97■■■□□ 2.71
USF3-203ENST00000491165 VGFO15240 615 aaPredicted RBP31.94■■■□□ 2.7
USF3-203ENST00000491165 STAC3Q96MF2 364 aa31.94■■■□□ 2.7
USF3-203ENST00000491165 NBPF1Q3BBV0 1214 aa31.91■■■□□ 2.7
USF3-203ENST00000491165 LMTK3Q96Q04 1460 aa31.91■■■□□ 2.7
USF3-203ENST00000491165 RALGAPBQ86X10 1494 aa31.91■■■□□ 2.7
USF3-203ENST00000491165 NRXN3Q9Y4C0 1643 aa31.9■■■□□ 2.7
USF3-203ENST00000491165 CFAP70Q5T0N1 1121 aa31.89■■■□□ 2.7
USF3-203ENST00000491165 TXNDC2Q86VQ3 553 aa31.88■■■□□ 2.69
USF3-203ENST00000491165 IQGAP1P46940 1657 aa31.87■■■□□ 2.69
USF3-203ENST00000491165 KIAA1210Q9ULL0 1709 aa31.86■■■□□ 2.69
USF3-203ENST00000491165 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.85■■■□□ 2.69
USF3-203ENST00000491165 HSPA2P54652 639 aa31.85■■■□□ 2.69
USF3-203ENST00000491165 SCAF11Q99590 1463 aaKnown RBP31.84■■■□□ 2.69
USF3-203ENST00000491165 SETD1AO15047 1707 aaKnown RBP31.83■■■□□ 2.69
USF3-203ENST00000491165 ROCK2O75116 1388 aaKnown RBP31.83■■■□□ 2.69
USF3-203ENST00000491165 C14orf93Q9H972 538 aaKnown RBP31.82■■■□□ 2.68
USF3-203ENST00000491165 EID1Q9Y6B2 187 aa31.81■■■□□ 2.68
USF3-203ENST00000491165 ALKQ9UM73 1620 aa31.81■■■□□ 2.68
USF3-203ENST00000491165 SETBP1Q9Y6X0 1596 aa31.81■■■□□ 2.68
USF3-203ENST00000491165 HDGFP51858 240 aaKnown RBP31.8■■■□□ 2.68
USF3-203ENST00000491165 ASXL1Q8IXJ9 1541 aa31.79■■■□□ 2.68
USF3-203ENST00000491165 POLR1AO95602 1720 aaPredicted RBP31.79■■■□□ 2.68
USF3-203ENST00000491165 PLEKHG1Q9ULL1 1385 aa31.79■■■□□ 2.68
USF3-203ENST00000491165 ADGRB1O14514 1584 aa31.79■■■□□ 2.68
USF3-203ENST00000491165 GPRASP1Q5JY77 1395 aa31.78■■■□□ 2.68
USF3-203ENST00000491165 LAMC1P11047 1609 aa31.78■■■□□ 2.68
USF3-203ENST00000491165 ADAMTS13Q76LX8 1427 aa31.76■■■□□ 2.68
USF3-203ENST00000491165 TMEM132EQ6IEE7 984 aa31.76■■■□□ 2.68
USF3-203ENST00000491165 ANKLE2Q86XL3 938 aa31.76■■■□□ 2.67
USF3-203ENST00000491165 CARD11Q9BXL7 1154 aa31.75■■■□□ 2.67
USF3-203ENST00000491165 NCKAP5LQ9HCH0 1330 aa31.74■■■□□ 2.67
USF3-203ENST00000491165 HIRIP3Q9BW71 556 aaPredicted RBP31.72■■■□□ 2.67
USF3-203ENST00000491165 BCANQ96GW7 911 aa31.71■■■□□ 2.67
USF3-203ENST00000491165 SLC26A8Q96RN1 970 aa31.71■■■□□ 2.67
USF3-203ENST00000491165 SUPT16HQ9Y5B9 1047 aaKnown RBP31.71■■■□□ 2.67
USF3-203ENST00000491165 MED14O60244 1454 aa31.7■■■□□ 2.67
USF3-203ENST00000491165 STRCQ7RTU9 1775 aa31.69■■■□□ 2.66
USF3-203ENST00000491165 METP08581 1390 aa31.69■■■□□ 2.66
USF3-203ENST00000491165 USP47Q96K76 1375 aa31.67■■■□□ 2.66
USF3-203ENST00000491165 DDX10Q13206 875 aaKnown RBP31.67■■■□□ 2.66
USF3-203ENST00000491165 NPHP4O75161 1426 aaPredicted RBP31.64■■■□□ 2.66
USF3-203ENST00000491165 HSPA5P11021 654 aaKnown RBP31.64■■■□□ 2.66
USF3-203ENST00000491165 EIF4G2P78344 907 aaKnown RBP eCLIP31.61■■■□□ 2.65
USF3-203ENST00000491165 YTHDC2Q9H6S0 1430 aaKnown RBP31.6■■■□□ 2.65
USF3-203ENST00000491165 DIP2AQ14689 1571 aa31.6■■■□□ 2.65
USF3-203ENST00000491165 TRAK1Q9UPV9 953 aa31.59■■■□□ 2.65
USF3-203ENST00000491165 ARHGEF28Q8N1W1 1705 aaKnown RBP31.58■■■□□ 2.65
USF3-203ENST00000491165 STK26Q9P289 416 aa31.58■■■□□ 2.65
USF3-203ENST00000491165 TBX22Q9Y458 520 aa31.58■■■□□ 2.65
USF3-203ENST00000491165 PTPRUQ92729 1446 aa31.57■■■□□ 2.64
USF3-203ENST00000491165 ST20-MTHFSA0A0A6YYL1 179 aa31.56■■■□□ 2.64
USF3-203ENST00000491165 LRPPRCP42704 1394 aaKnown RBP31.51■■■□□ 2.64
USF3-203ENST00000491165 CHD2O14647 1828 aaKnown RBP31.5■■■□□ 2.63
USF3-203ENST00000491165 KNDC1Q76NI1 1749 aa31.5■■■□□ 2.63
USF3-203ENST00000491165 XRN1Q8IZH2 1706 aaKnown RBP31.47■■■□□ 2.63
USF3-203ENST00000491165 ABCC11Q96J66 1382 aa31.47■■■□□ 2.63
USF3-203ENST00000491165 MYT1Q01538 1121 aa31.46■■■□□ 2.63
USF3-203ENST00000491165 TESK2Q96S53 571 aa31.46■■■□□ 2.63
USF3-203ENST00000491165 TECPR2O15040 1411 aa31.45■■■□□ 2.63
USF3-203ENST00000491165 QRICH2Q9H0J4 1663 aa31.45■■■□□ 2.63
USF3-203ENST00000491165 AMOTL2Q9Y2J4 779 aa31.45■■■□□ 2.62
USF3-203ENST00000491165 CPS1P31327 1500 aa31.44■■■□□ 2.62
USF3-203ENST00000491165 PLEKHH1Q9ULM0 1364 aa31.44■■■□□ 2.62
USF3-203ENST00000491165 C11orf95C9JLR9 678 aaPredicted RBP31.44■■■□□ 2.62
USF3-203ENST00000491165 CCER2I3L3R5 266 aa31.44■■■□□ 2.62
USF3-203ENST00000491165 EIF3AQ14152 1382 aaKnown RBP31.43■■■□□ 2.62
USF3-203ENST00000491165 ROBO2Q9HCK4 1378 aa31.43■■■□□ 2.62
USF3-203ENST00000491165 DLC1Q96QB1 1528 aa31.43■■■□□ 2.62
USF3-203ENST00000491165 PIK3R4Q99570 1358 aa31.42■■■□□ 2.62
USF3-203ENST00000491165 SAFB2Q14151 953 aaKnown RBP eCLIP31.42■■■□□ 2.62
USF3-203ENST00000491165 WAPLQ7Z5K2 1190 aa31.42■■■□□ 2.62
USF3-203ENST00000491165 PRAM1Q96QH2 718 aa31.42■■■□□ 2.62
USF3-203ENST00000491165 ANP32CO43423 234 aa31.42■■■□□ 2.62
USF3-203ENST00000491165 STRCP1A6NGW2 1772 aa31.41■■■□□ 2.62
USF3-203ENST00000491165 KCNA6P17658 529 aa31.4■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms