RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.08
HDAC3-210ENST00000490808 KIF1BO60333 1816 aa14.57□□□□□ -0.08
HDAC3-210ENST00000490808 HDGFP51858 240 aaKnown RBP14.57□□□□□ -0.08
HDAC3-210ENST00000490808 ADGRB3O60242 1522 aa14.56□□□□□ -0.08
HDAC3-210ENST00000490808 HSPA1LP34931 641 aa14.56□□□□□ -0.08
HDAC3-210ENST00000490808 STAG3Q9UJ98 1225 aa14.56□□□□□ -0.08
HDAC3-210ENST00000490808 SLIT1O75093 1534 aa14.56□□□□□ -0.08
HDAC3-210ENST00000490808 POLR1AO95602 1720 aaPredicted RBP14.55□□□□□ -0.08
HDAC3-210ENST00000490808 IDI1Q13907 227 aa14.55□□□□□ -0.08
HDAC3-210ENST00000490808 NEURL4Q96JN8 1562 aa14.55□□□□□ -0.08
HDAC3-210ENST00000490808 PIP4K2BP78356 416 aa14.54□□□□□ -0.08
HDAC3-210ENST00000490808 ARHGAP23Q9P227 1491 aa14.53□□□□□ -0.08
HDAC3-210ENST00000490808 FOXD1Q16676 465 aa14.53□□□□□ -0.08
HDAC3-210ENST00000490808 ANKLE2Q86XL3 938 aa14.53□□□□□ -0.08
HDAC3-210ENST00000490808 PHF23Q9BUL5 403 aaPredicted RBP14.53□□□□□ -0.08
HDAC3-210ENST00000490808 TMEM131LA2VDJ0 1609 aa14.52□□□□□ -0.08
HDAC3-210ENST00000490808 EID1Q9Y6B2 187 aa14.52□□□□□ -0.09
HDAC3-210ENST00000490808 MED14O60244 1454 aa14.51□□□□□ -0.09
HDAC3-210ENST00000490808 CCDC144AA2RUR9 1427 aa14.51□□□□□ -0.09
HDAC3-210ENST00000490808 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.51□□□□□ -0.09
HDAC3-210ENST00000490808 TMEM2Q9UHN6 1383 aa14.5□□□□□ -0.09
HDAC3-210ENST00000490808 TOM1O60784 492 aa14.5□□□□□ -0.09
HDAC3-210ENST00000490808 MYO5BQ9ULV0 1848 aa14.5□□□□□ -0.09
HDAC3-210ENST00000490808 CLTCL1P53675 1640 aa14.49□□□□□ -0.09
HDAC3-210ENST00000490808 L3MBTL2Q969R5 705 aa14.49□□□□□ -0.09
HDAC3-210ENST00000490808 SCAF11Q99590 1463 aaKnown RBP14.49□□□□□ -0.09
HDAC3-210ENST00000490808 RPGRIP1LQ68CZ1 1315 aa14.48□□□□□ -0.09
HDAC3-210ENST00000490808 STAC3Q96MF2 364 aa14.47□□□□□ -0.09
HDAC3-210ENST00000490808 CPS1P31327 1500 aa14.46□□□□□ -0.1
HDAC3-210ENST00000490808 IQGAP1P46940 1657 aa14.46□□□□□ -0.1
HDAC3-210ENST00000490808 ZFYVE9O95405 1425 aa14.45□□□□□ -0.1
HDAC3-210ENST00000490808 TXNDC2Q86VQ3 553 aa14.44□□□□□ -0.1
HDAC3-210ENST00000490808 NPHP4O75161 1426 aaPredicted RBP14.43□□□□□ -0.1
HDAC3-210ENST00000490808 RIMS2Q9UQ26 1411 aa14.43□□□□□ -0.1
HDAC3-210ENST00000490808 EIF4G2P78344 907 aaKnown RBP eCLIP14.43□□□□□ -0.1
HDAC3-210ENST00000490808 CHGAP10645 457 aaKnown RBP14.42□□□□□ -0.1
HDAC3-210ENST00000490808 PLEKHG1Q9ULL1 1385 aa14.42□□□□□ -0.1
HDAC3-210ENST00000490808 VGFO15240 615 aaPredicted RBP14.41□□□□□ -0.1
HDAC3-210ENST00000490808 DIP2AQ14689 1571 aa14.41□□□□□ -0.1
HDAC3-210ENST00000490808 SPATA31E1Q6ZUB1 1445 aa14.41□□□□□ -0.1
HDAC3-210ENST00000490808 PPLO60437 1756 aa14.4□□□□□ -0.1
HDAC3-210ENST00000490808 ZNF326Q5BKZ1 582 aaKnown RBP14.4□□□□□ -0.1
HDAC3-210ENST00000490808 SENP3Q9H4L4 574 aaPredicted RBP14.4□□□□□ -0.1
HDAC3-210ENST00000490808 LTKP29376 864 aa14.39□□□□□ -0.11
HDAC3-210ENST00000490808 NEXMIFQ5QGS0 1516 aa14.39□□□□□ -0.11
HDAC3-210ENST00000490808 PIK3R4Q99570 1358 aa14.38□□□□□ -0.11
HDAC3-210ENST00000490808 IFT172Q9UG01 1749 aa14.38□□□□□ -0.11
HDAC3-210ENST00000490808 SETBP1Q9Y6X0 1596 aa14.37□□□□□ -0.11
HDAC3-210ENST00000490808 ALKQ9UM73 1620 aa14.37□□□□□ -0.11
HDAC3-210ENST00000490808 DCAF11Q8TEB1 546 aa14.36□□□□□ -0.11
HDAC3-210ENST00000490808 TBX22Q9Y458 520 aa14.35□□□□□ -0.11
HDAC3-210ENST00000490808 MYOM2P54296 1465 aa14.35□□□□□ -0.11
HDAC3-210ENST00000490808 HSPA5P11021 654 aaKnown RBP14.33□□□□□ -0.12
HDAC3-210ENST00000490808 NBPF8Q3BBV2 869 aa14.32□□□□□ -0.12
HDAC3-210ENST00000490808 LAMC1P11047 1609 aa14.32□□□□□ -0.12
HDAC3-210ENST00000490808 CHD2O14647 1828 aaKnown RBP14.31□□□□□ -0.12
HDAC3-210ENST00000490808 BCANQ96GW7 911 aa14.31□□□□□ -0.12
HDAC3-210ENST00000490808 KDM2AQ9Y2K7 1162 aa14.31□□□□□ -0.12
HDAC3-210ENST00000490808 RALGAPBQ86X10 1494 aa14.31□□□□□ -0.12
HDAC3-210ENST00000490808 RGL3Q3MIN7 710 aa14.3□□□□□ -0.12
HDAC3-210ENST00000490808 NKTRP30414 1462 aaKnown RBP14.3□□□□□ -0.12
HDAC3-210ENST00000490808 NRXN1Q9ULB1 1477 aa14.3□□□□□ -0.12
HDAC3-210ENST00000490808 NWD1Q149M9 1564 aa14.3□□□□□ -0.12
HDAC3-210ENST00000490808 STRCP1A6NGW2 1772 aa14.29□□□□□ -0.12
HDAC3-210ENST00000490808 RGS17Q9UGC6 210 aaPredicted RBP14.29□□□□□ -0.12
HDAC3-210ENST00000490808 ADAMTS13Q76LX8 1427 aa14.29□□□□□ -0.12
HDAC3-210ENST00000490808 NRXN3Q9Y4C0 1643 aa14.29□□□□□ -0.12
HDAC3-210ENST00000490808 PIK3C2GO75747 1445 aa14.28□□□□□ -0.12
HDAC3-210ENST00000490808 KCNA6P17658 529 aa14.28□□□□□ -0.12
HDAC3-210ENST00000490808 LRRC7Q96NW7 1537 aa14.27□□□□□ -0.12
HDAC3-210ENST00000490808 NCOA3Q9Y6Q9 1424 aa14.27□□□□□ -0.12
HDAC3-210ENST00000490808 DDX10Q13206 875 aaKnown RBP14.27□□□□□ -0.13
HDAC3-210ENST00000490808 MIER1Q8N108 512 aa14.27□□□□□ -0.13
HDAC3-210ENST00000490808 CARD11Q9BXL7 1154 aa14.27□□□□□ -0.13
HDAC3-210ENST00000490808 KIAA1210Q9ULL0 1709 aa14.27□□□□□ -0.13
HDAC3-210ENST00000490808 PRAG1Q86YV5 1406 aa14.26□□□□□ -0.13
HDAC3-210ENST00000490808 SETD1AO15047 1707 aaKnown RBP14.26□□□□□ -0.13
HDAC3-210ENST00000490808 ROCK2O75116 1388 aaKnown RBP14.25□□□□□ -0.13
HDAC3-210ENST00000490808 HIRIP3Q9BW71 556 aaPredicted RBP14.25□□□□□ -0.13
HDAC3-210ENST00000490808 USP47Q96K76 1375 aa14.24□□□□□ -0.13
HDAC3-210ENST00000490808 ANP32CO43423 234 aa14.24□□□□□ -0.13
HDAC3-210ENST00000490808 CENPBP07199 599 aaPredicted RBP14.24□□□□□ -0.13
HDAC3-210ENST00000490808 SLC26A8Q96RN1 970 aa14.24□□□□□ -0.13
HDAC3-210ENST00000490808 TRPM1Q7Z4N2 1603 aa14.23□□□□□ -0.13
HDAC3-210ENST00000490808 ADGRF5Q8IZF2 1346 aa14.22□□□□□ -0.13
HDAC3-210ENST00000490808 XRN1Q8IZH2 1706 aaKnown RBP14.22□□□□□ -0.13
HDAC3-210ENST00000490808 SLC24A1O60721 1099 aa14.22□□□□□ -0.13
HDAC3-210ENST00000490808 NUTM2DQ5VT03 806 aaPredicted RBP14.22□□□□□ -0.13
HDAC3-210ENST00000490808 C14orf93Q9H972 538 aaKnown RBP14.22□□□□□ -0.13
HDAC3-210ENST00000490808 PTCH1Q13635 1447 aa14.21□□□□□ -0.13
HDAC3-210ENST00000490808 KNDC1Q76NI1 1749 aa14.21□□□□□ -0.14
HDAC3-210ENST00000490808 POTEAQ6S8J7 498 aa14.2□□□□□ -0.14
HDAC3-210ENST00000490808 TECPR2O15040 1411 aa14.2□□□□□ -0.14
HDAC3-210ENST00000490808 GPRASP1Q5JY77 1395 aa14.2□□□□□ -0.14
HDAC3-210ENST00000490808 SIRT1Q96EB6 747 aa14.19□□□□□ -0.14
HDAC3-210ENST00000490808 ABCC11Q96J66 1382 aa14.19□□□□□ -0.14
HDAC3-210ENST00000490808 CCDC7Q96M83 1385 aa14.19□□□□□ -0.14
HDAC3-210ENST00000490808 XIRP1Q702N8 1843 aaKnown RBP14.18□□□□□ -0.14
HDAC3-210ENST00000490808 AMOTL2Q9Y2J4 779 aa14.18□□□□□ -0.14
HDAC3-210ENST00000490808 METP08581 1390 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms