RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 PLEKHG1Q9ULL1 1385 aa15.76■□□□□ 0.11
TTC28-207ENST00000490475 MED1Q15648 1581 aaPredicted RBP15.75■□□□□ 0.11
TTC28-207ENST00000490475 ZFYVE9O95405 1425 aa15.75■□□□□ 0.11
TTC28-207ENST00000490475 TMEM131LA2VDJ0 1609 aa15.75■□□□□ 0.11
TTC28-207ENST00000490475 XIRP1Q702N8 1843 aaKnown RBP15.75■□□□□ 0.11
TTC28-207ENST00000490475 PROSER2Q86WR7 435 aaPredicted RBP15.74■□□□□ 0.11
TTC28-207ENST00000490475 SLC26A8Q96RN1 970 aa15.74■□□□□ 0.11
TTC28-207ENST00000490475 FAM135BQ49AJ0 1406 aa15.74■□□□□ 0.11
TTC28-207ENST00000490475 RIMS2Q9UQ26 1411 aa15.74■□□□□ 0.11
TTC28-207ENST00000490475 NWD1Q149M9 1564 aa15.74■□□□□ 0.11
TTC28-207ENST00000490475 NUP155O75694 1391 aa15.74■□□□□ 0.11
TTC28-207ENST00000490475 TMEM94Q12767 1356 aa15.74■□□□□ 0.11
TTC28-207ENST00000490475 E9PCH4 1651 aa15.73■□□□□ 0.11
TTC28-207ENST00000490475 MYO5BQ9ULV0 1848 aa15.73■□□□□ 0.11
TTC28-207ENST00000490475 PHF23Q9BUL5 403 aaPredicted RBP15.72■□□□□ 0.11
TTC28-207ENST00000490475 TBX22Q9Y458 520 aa15.72■□□□□ 0.11
TTC28-207ENST00000490475 MSH6P52701 1360 aa15.72■□□□□ 0.11
TTC28-207ENST00000490475 NCOA3Q9Y6Q9 1424 aa15.71■□□□□ 0.11
TTC28-207ENST00000490475 CHGAP10645 457 aaKnown RBP15.71■□□□□ 0.11
TTC28-207ENST00000490475 PIK3R4Q99570 1358 aa15.71■□□□□ 0.11
TTC28-207ENST00000490475 DIP2AQ14689 1571 aa15.7■□□□□ 0.1
TTC28-207ENST00000490475 ITGAEP38570 1179 aa15.7■□□□□ 0.1
TTC28-207ENST00000490475 CHD2O14647 1828 aaKnown RBP15.7■□□□□ 0.1
TTC28-207ENST00000490475 RRBP1Q9P2E9 1410 aaKnown RBP15.67■□□□□ 0.1
TTC28-207ENST00000490475 SPHKAPQ2M3C7 1700 aa15.65■□□□□ 0.1
TTC28-207ENST00000490475 ROBO1Q9Y6N7 1651 aa15.63■□□□□ 0.09
TTC28-207ENST00000490475 TRPM2O94759 1503 aa15.63■□□□□ 0.09
TTC28-207ENST00000490475 SLAIN2Q9P270 581 aa15.63■□□□□ 0.09
TTC28-207ENST00000490475 ADAMTS13Q76LX8 1427 aa15.62■□□□□ 0.09
TTC28-207ENST00000490475 CADPS2Q86UW7 1296 aa15.62■□□□□ 0.09
TTC28-207ENST00000490475 SENP3Q9H4L4 574 aaPredicted RBP15.62■□□□□ 0.09
TTC28-207ENST00000490475 C14orf37Q86TY3 774 aa15.61■□□□□ 0.09
TTC28-207ENST00000490475 C19orf44Q9H6X5 657 aa15.61■□□□□ 0.09
TTC28-207ENST00000490475 ATF3P18847 181 aa15.59■□□□□ 0.09
TTC28-207ENST00000490475 ZNF326Q5BKZ1 582 aaKnown RBP15.59■□□□□ 0.09
TTC28-207ENST00000490475 NAIPQ13075 1403 aa15.59■□□□□ 0.09
TTC28-207ENST00000490475 RBM33Q96EV2 1170 aaKnown RBP15.58■□□□□ 0.08
TTC28-207ENST00000490475 SETBP1Q9Y6X0 1596 aa15.58■□□□□ 0.08
TTC28-207ENST00000490475 KIF1BO60333 1816 aa15.57■□□□□ 0.08
TTC28-207ENST00000490475 NUTM2DQ5VT03 806 aaPredicted RBP15.57■□□□□ 0.08
TTC28-207ENST00000490475 HFM1A2PYH4 1435 aa15.57■□□□□ 0.08
TTC28-207ENST00000490475 DCCP43146 1447 aa15.57■□□□□ 0.08
TTC28-207ENST00000490475 AMOTL2Q9Y2J4 779 aa15.56■□□□□ 0.08
TTC28-207ENST00000490475 ACIN1Q9UKV3 1341 aaKnown RBP15.56■□□□□ 0.08
TTC28-207ENST00000490475 JCADQ9P266 1359 aa15.56■□□□□ 0.08
TTC28-207ENST00000490475 PHLPP1O60346 1717 aa15.56■□□□□ 0.08
TTC28-207ENST00000490475 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.54■□□□□ 0.08
TTC28-207ENST00000490475 VGFO15240 615 aaPredicted RBP15.53■□□□□ 0.08
TTC28-207ENST00000490475 TRIM52Q96A61 297 aa15.53■□□□□ 0.08
TTC28-207ENST00000490475 RPGRIP1LQ68CZ1 1315 aa15.52■□□□□ 0.08
TTC28-207ENST00000490475 CLTCL1P53675 1640 aa15.52■□□□□ 0.08
TTC28-207ENST00000490475 XRN1Q8IZH2 1706 aaKnown RBP15.51■□□□□ 0.07
TTC28-207ENST00000490475 NRXN3Q9Y4C0 1643 aa15.51■□□□□ 0.07
TTC28-207ENST00000490475 SPATA31A6Q5VVP1 1343 aa15.51■□□□□ 0.07
TTC28-207ENST00000490475 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
TTC28-207ENST00000490475 AHDC1Q5TGY3 1603 aaPredicted RBP15.5■□□□□ 0.07
TTC28-207ENST00000490475 NEXMIFQ5QGS0 1516 aa15.5■□□□□ 0.07
TTC28-207ENST00000490475 PTPRUQ92729 1446 aa15.5■□□□□ 0.07
TTC28-207ENST00000490475 COL16A1Q07092 1604 aaPredicted RBP15.48■□□□□ 0.07
TTC28-207ENST00000490475 RGS17Q9UGC6 210 aaPredicted RBP15.47■□□□□ 0.07
TTC28-207ENST00000490475 METP08581 1390 aa15.47■□□□□ 0.07
TTC28-207ENST00000490475 SHPRHQ149N8 1683 aa15.45■□□□□ 0.06
TTC28-207ENST00000490475 ADGRL3Q9HAR2 1447 aa15.45■□□□□ 0.06
TTC28-207ENST00000490475 BRINP3Q76B58 766 aa15.45■□□□□ 0.06
TTC28-207ENST00000490475 PTCH1Q13635 1447 aa15.44■□□□□ 0.06
TTC28-207ENST00000490475 MEX3CQ5U5Q3 659 aaKnown RBP15.43■□□□□ 0.06
TTC28-207ENST00000490475 ZNF772Q68DY9 489 aaPredicted RBP15.43■□□□□ 0.06
TTC28-207ENST00000490475 PRAG1Q86YV5 1406 aa15.43■□□□□ 0.06
TTC28-207ENST00000490475 LRRC59Q96AG4 307 aaKnown RBP15.42■□□□□ 0.06
TTC28-207ENST00000490475 ASXL1Q8IXJ9 1541 aa15.42■□□□□ 0.06
TTC28-207ENST00000490475 CCDC144AA2RUR9 1427 aa15.42■□□□□ 0.06
TTC28-207ENST00000490475 MST1RQ04912 1400 aa15.42■□□□□ 0.06
TTC28-207ENST00000490475 PPLO60437 1756 aa15.41■□□□□ 0.06
TTC28-207ENST00000490475 SETD5Q9C0A6 1442 aa15.41■□□□□ 0.06
TTC28-207ENST00000490475 POTEAQ6S8J7 498 aa15.4■□□□□ 0.06
TTC28-207ENST00000490475 NHSL1Q5SYE7 1610 aa15.39■□□□□ 0.05
TTC28-207ENST00000490475 ANKRD30BQ9BXX2 1392 aa15.39■□□□□ 0.05
TTC28-207ENST00000490475 SETD1AO15047 1707 aaKnown RBP15.38■□□□□ 0.05
TTC28-207ENST00000490475 NALCNQ8IZF0 1738 aa15.38■□□□□ 0.05
TTC28-207ENST00000490475 MPHOSPH9Q99550 1183 aa15.37■□□□□ 0.05
TTC28-207ENST00000490475 C1orf167Q5SNV9 1468 aa15.35■□□□□ 0.05
TTC28-207ENST00000490475 LRP6O75581 1613 aa15.35■□□□□ 0.05
TTC28-207ENST00000490475 ROBO2Q9HCK4 1378 aa15.34■□□□□ 0.05
TTC28-207ENST00000490475 LAMC1P11047 1609 aa15.33■□□□□ 0.04
TTC28-207ENST00000490475 SPATA31E1Q6ZUB1 1445 aa15.33■□□□□ 0.04
TTC28-207ENST00000490475 NUTM2BA6NNL0 878 aaPredicted RBP15.31■□□□□ 0.04
TTC28-207ENST00000490475 NUTM2EB1AL46 878 aaPredicted RBP15.31■□□□□ 0.04
TTC28-207ENST00000490475 FOXD1Q16676 465 aa15.31■□□□□ 0.04
TTC28-207ENST00000490475 RGL3Q3MIN7 710 aa15.31■□□□□ 0.04
TTC28-207ENST00000490475 NUTM2AQ8IVF1 878 aaPredicted RBP15.31■□□□□ 0.04
TTC28-207ENST00000490475 CDC42BPGQ6DT37 1551 aa15.31■□□□□ 0.04
TTC28-207ENST00000490475 IFT172Q9UG01 1749 aa15.31■□□□□ 0.04
TTC28-207ENST00000490475 TECPR2O15040 1411 aa15.3■□□□□ 0.04
TTC28-207ENST00000490475 RXRBP28702 533 aa15.3■□□□□ 0.04
TTC28-207ENST00000490475 PNPLA6Q8IY17 1366 aa15.3■□□□□ 0.04
TTC28-207ENST00000490475 CDK12Q9NYV4 1490 aaPredicted RBP15.3■□□□□ 0.04
TTC28-207ENST00000490475 LRPPRCP42704 1394 aaKnown RBP15.29■□□□□ 0.04
TTC28-207ENST00000490475 ABCC11Q96J66 1382 aa15.29■□□□□ 0.04
TTC28-207ENST00000490475 SOS2Q07890 1332 aaPredicted RBP15.29■□□□□ 0.04
TTC28-207ENST00000490475 NPHP3Q7Z494 1330 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms