RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 NUP155O75694 1391 aa14.85□□□□□ -0.03
TMEM39A-210ENST00000490099 IQGAP3Q86VI3 1631 aa14.84□□□□□ -0.03
TMEM39A-210ENST00000490099 ALKQ9UM73 1620 aa14.84□□□□□ -0.03
TMEM39A-210ENST00000490099 ZFYVE9O95405 1425 aa14.84□□□□□ -0.03
TMEM39A-210ENST00000490099 HOXD11P31277 338 aaPredicted RBP14.84□□□□□ -0.03
TMEM39A-210ENST00000490099 ITGAEP38570 1179 aa14.84□□□□□ -0.03
TMEM39A-210ENST00000490099 GCC2Q8IWJ2 1684 aa14.84□□□□□ -0.03
TMEM39A-210ENST00000490099 KCNA6P17658 529 aa14.82□□□□□ -0.04
TMEM39A-210ENST00000490099 E9PCH4 1651 aa14.81□□□□□ -0.04
TMEM39A-210ENST00000490099 NAIPQ13075 1403 aa14.81□□□□□ -0.04
TMEM39A-210ENST00000490099 TMEM131LA2VDJ0 1609 aa14.81□□□□□ -0.04
TMEM39A-210ENST00000490099 HDGFP51858 240 aaKnown RBP14.8□□□□□ -0.04
TMEM39A-210ENST00000490099 SLC26A8Q96RN1 970 aa14.79□□□□□ -0.04
TMEM39A-210ENST00000490099 PLEKHG1Q9ULL1 1385 aa14.79□□□□□ -0.04
TMEM39A-210ENST00000490099 RIMS2Q9UQ26 1411 aa14.78□□□□□ -0.04
TMEM39A-210ENST00000490099 HSPA1LP34931 641 aa14.78□□□□□ -0.04
TMEM39A-210ENST00000490099 TBX22Q9Y458 520 aa14.78□□□□□ -0.04
TMEM39A-210ENST00000490099 PIP4K2BP78356 416 aa14.77□□□□□ -0.05
TMEM39A-210ENST00000490099 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.77□□□□□ -0.05
TMEM39A-210ENST00000490099 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
TMEM39A-210ENST00000490099 POTEDQ86YR6 584 aa14.75□□□□□ -0.05
TMEM39A-210ENST00000490099 DISP3Q9P2K9 1392 aa14.74□□□□□ -0.05
TMEM39A-210ENST00000490099 ADAMTS13Q76LX8 1427 aa14.74□□□□□ -0.05
TMEM39A-210ENST00000490099 TMEM94Q12767 1356 aa14.73□□□□□ -0.05
TMEM39A-210ENST00000490099 XIRP1Q702N8 1843 aaKnown RBP14.73□□□□□ -0.05
TMEM39A-210ENST00000490099 MYO5BQ9ULV0 1848 aa14.73□□□□□ -0.05
TMEM39A-210ENST00000490099 NWD1Q149M9 1564 aa14.73□□□□□ -0.05
TMEM39A-210ENST00000490099 NKTRP30414 1462 aaKnown RBP14.72□□□□□ -0.05
TMEM39A-210ENST00000490099 CHGAP10645 457 aaKnown RBP14.71□□□□□ -0.05
TMEM39A-210ENST00000490099 ILDR2Q71H61 639 aa14.71□□□□□ -0.05
TMEM39A-210ENST00000490099 PROSER2Q86WR7 435 aaPredicted RBP14.71□□□□□ -0.05
TMEM39A-210ENST00000490099 FAM135BQ49AJ0 1406 aa14.71□□□□□ -0.05
TMEM39A-210ENST00000490099 PIK3R4Q99570 1358 aa14.71□□□□□ -0.06
TMEM39A-210ENST00000490099 PPP1R15AO75807 674 aaPredicted RBP14.7□□□□□ -0.06
TMEM39A-210ENST00000490099 NCOA3Q9Y6Q9 1424 aa14.69□□□□□ -0.06
TMEM39A-210ENST00000490099 BCANQ96GW7 911 aa14.68□□□□□ -0.06
TMEM39A-210ENST00000490099 CHD2O14647 1828 aaKnown RBP14.68□□□□□ -0.06
TMEM39A-210ENST00000490099 SPHKAPQ2M3C7 1700 aa14.67□□□□□ -0.06
TMEM39A-210ENST00000490099 NUTM2DQ5VT03 806 aaPredicted RBP14.67□□□□□ -0.06
TMEM39A-210ENST00000490099 RBM33Q96EV2 1170 aaKnown RBP14.67□□□□□ -0.06
TMEM39A-210ENST00000490099 TRPM2O94759 1503 aa14.66□□□□□ -0.06
TMEM39A-210ENST00000490099 DIP2AQ14689 1571 aa14.65□□□□□ -0.06
TMEM39A-210ENST00000490099 PTPRUQ92729 1446 aa14.64□□□□□ -0.07
TMEM39A-210ENST00000490099 SETBP1Q9Y6X0 1596 aa14.64□□□□□ -0.07
TMEM39A-210ENST00000490099 CLTCL1P53675 1640 aa14.63□□□□□ -0.07
TMEM39A-210ENST00000490099 TRIM52Q96A61 297 aa14.63□□□□□ -0.07
TMEM39A-210ENST00000490099 SLC4A1APQ9BWU0 796 aaKnown RBP14.63□□□□□ -0.07
TMEM39A-210ENST00000490099 SLAIN2Q9P270 581 aa14.63□□□□□ -0.07
TMEM39A-210ENST00000490099 MSH6P52701 1360 aa14.62□□□□□ -0.07
TMEM39A-210ENST00000490099 C19orf44Q9H6X5 657 aa14.62□□□□□ -0.07
TMEM39A-210ENST00000490099 AMOTL2Q9Y2J4 779 aa14.62□□□□□ -0.07
TMEM39A-210ENST00000490099 NRXN3Q9Y4C0 1643 aa14.62□□□□□ -0.07
TMEM39A-210ENST00000490099 RPGRIP1LQ68CZ1 1315 aa14.61□□□□□ -0.07
TMEM39A-210ENST00000490099 NEXMIFQ5QGS0 1516 aa14.61□□□□□ -0.07
TMEM39A-210ENST00000490099 METP08581 1390 aa14.6□□□□□ -0.07
TMEM39A-210ENST00000490099 SOCS7O14512 581 aa14.6□□□□□ -0.07
TMEM39A-210ENST00000490099 ZNF326Q5BKZ1 582 aaKnown RBP14.6□□□□□ -0.07
TMEM39A-210ENST00000490099 ACIN1Q9UKV3 1341 aaKnown RBP14.6□□□□□ -0.07
TMEM39A-210ENST00000490099 MED1Q15648 1581 aaPredicted RBP14.6□□□□□ -0.07
TMEM39A-210ENST00000490099 VGFO15240 615 aaPredicted RBP14.58□□□□□ -0.08
TMEM39A-210ENST00000490099 MPHOSPH9Q99550 1183 aa14.58□□□□□ -0.08
TMEM39A-210ENST00000490099 CADPS2Q86UW7 1296 aa14.57□□□□□ -0.08
TMEM39A-210ENST00000490099 XRN1Q8IZH2 1706 aaKnown RBP14.56□□□□□ -0.08
TMEM39A-210ENST00000490099 ROBO1Q9Y6N7 1651 aa14.55□□□□□ -0.08
TMEM39A-210ENST00000490099 KIF1BO60333 1816 aa14.55□□□□□ -0.08
TMEM39A-210ENST00000490099 DCCP43146 1447 aa14.54□□□□□ -0.08
TMEM39A-210ENST00000490099 SPATA31E1Q6ZUB1 1445 aa14.54□□□□□ -0.08
TMEM39A-210ENST00000490099 PRAG1Q86YV5 1406 aa14.54□□□□□ -0.08
TMEM39A-210ENST00000490099 SETD5Q9C0A6 1442 aa14.53□□□□□ -0.08
TMEM39A-210ENST00000490099 ATF3P18847 181 aa14.53□□□□□ -0.08
TMEM39A-210ENST00000490099 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.52□□□□□ -0.08
TMEM39A-210ENST00000490099 RGS17Q9UGC6 210 aaPredicted RBP14.52□□□□□ -0.09
TMEM39A-210ENST00000490099 C14orf37Q86TY3 774 aa14.51□□□□□ -0.09
TMEM39A-210ENST00000490099 CCDC144AA2RUR9 1427 aa14.49□□□□□ -0.09
TMEM39A-210ENST00000490099 SETD1AO15047 1707 aaKnown RBP14.49□□□□□ -0.09
TMEM39A-210ENST00000490099 HRCP23327 699 aa14.49□□□□□ -0.09
TMEM39A-210ENST00000490099 BRINP3Q76B58 766 aa14.49□□□□□ -0.09
TMEM39A-210ENST00000490099 ADGRL3Q9HAR2 1447 aa14.49□□□□□ -0.09
TMEM39A-210ENST00000490099 ANKRD30BQ9BXX2 1392 aa14.48□□□□□ -0.09
TMEM39A-210ENST00000490099 MST1RQ04912 1400 aa14.48□□□□□ -0.09
TMEM39A-210ENST00000490099 PTCH1Q13635 1447 aa14.48□□□□□ -0.09
TMEM39A-210ENST00000490099 ROBO2Q9HCK4 1378 aa14.47□□□□□ -0.09
TMEM39A-210ENST00000490099 JCADQ9P266 1359 aa14.47□□□□□ -0.09
TMEM39A-210ENST00000490099 PPLO60437 1756 aa14.47□□□□□ -0.09
TMEM39A-210ENST00000490099 ADGRF5Q8IZF2 1346 aa14.47□□□□□ -0.09
TMEM39A-210ENST00000490099 AHDC1Q5TGY3 1603 aaPredicted RBP14.47□□□□□ -0.09
TMEM39A-210ENST00000490099 RAB3GAP2Q9H2M9 1393 aa14.47□□□□□ -0.09
TMEM39A-210ENST00000490099 COL16A1Q07092 1604 aaPredicted RBP14.46□□□□□ -0.09
TMEM39A-210ENST00000490099 RGL3Q3MIN7 710 aa14.45□□□□□ -0.1
TMEM39A-210ENST00000490099 PHLPP1O60346 1717 aa14.44□□□□□ -0.1
TMEM39A-210ENST00000490099 ABCC11Q96J66 1382 aa14.43□□□□□ -0.1
TMEM39A-210ENST00000490099 SPATA31A6Q5VVP1 1343 aa14.42□□□□□ -0.1
TMEM39A-210ENST00000490099 TECPR2O15040 1411 aa14.42□□□□□ -0.1
TMEM39A-210ENST00000490099 PIK3C2GO75747 1445 aa14.41□□□□□ -0.1
TMEM39A-210ENST00000490099 ASXL1Q8IXJ9 1541 aa14.41□□□□□ -0.1
TMEM39A-210ENST00000490099 SIRT1Q96EB6 747 aa14.41□□□□□ -0.1
TMEM39A-210ENST00000490099 C14orf93Q9H972 538 aaKnown RBP14.41□□□□□ -0.1
TMEM39A-210ENST00000490099 LRPPRCP42704 1394 aaKnown RBP14.41□□□□□ -0.1
TMEM39A-210ENST00000490099 NRXN1Q9ULB1 1477 aa14.41□□□□□ -0.1
TMEM39A-210ENST00000490099 IFT172Q9UG01 1749 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms