RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 RGL3Q3MIN7 710 aa16.51■□□□□ 0.23
TRIM40-208ENST00000489892 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
TRIM40-208ENST00000489892 MYOM2P54296 1465 aa16.5■□□□□ 0.23
TRIM40-208ENST00000489892 HSPA1LP34931 641 aa16.5■□□□□ 0.23
TRIM40-208ENST00000489892 DIEXFQ68CQ4 756 aaKnown RBP16.5■□□□□ 0.23
TRIM40-208ENST00000489892 RALGAPBQ86X10 1494 aa16.49■□□□□ 0.23
TRIM40-208ENST00000489892 PRAG1Q86YV5 1406 aa16.49■□□□□ 0.23
TRIM40-208ENST00000489892 UGGT1Q9NYU2 1555 aa16.49■□□□□ 0.23
TRIM40-208ENST00000489892 TNRQ92752 1358 aa16.48■□□□□ 0.23
TRIM40-208ENST00000489892 NCKAP5LQ9HCH0 1330 aa16.47■□□□□ 0.23
TRIM40-208ENST00000489892 ZNF326Q5BKZ1 582 aaKnown RBP16.47■□□□□ 0.23
TRIM40-208ENST00000489892 NLRP1Q9C000 1473 aa16.47■□□□□ 0.23
TRIM40-208ENST00000489892 CHGAP10645 457 aaKnown RBP16.46■□□□□ 0.23
TRIM40-208ENST00000489892 IDI1Q13907 227 aa16.46■□□□□ 0.23
TRIM40-208ENST00000489892 STAG3Q9UJ98 1225 aa16.46■□□□□ 0.23
TRIM40-208ENST00000489892 KDM2AQ9Y2K7 1162 aa16.46■□□□□ 0.23
TRIM40-208ENST00000489892 KDM5AP29375 1690 aaKnown RBP16.46■□□□□ 0.23
TRIM40-208ENST00000489892 FBXO31Q5XUX0 539 aaPredicted RBP16.45■□□□□ 0.22
TRIM40-208ENST00000489892 VGFO15240 615 aaPredicted RBP16.44■□□□□ 0.22
TRIM40-208ENST00000489892 EIF4G2P78344 907 aaKnown RBP eCLIP16.44■□□□□ 0.22
TRIM40-208ENST00000489892 IFT172Q9UG01 1749 aa16.44■□□□□ 0.22
TRIM40-208ENST00000489892 ZNF335Q9H4Z2 1342 aaPredicted RBP16.44■□□□□ 0.22
TRIM40-208ENST00000489892 A2ML1A8K2U0 1454 aa16.43■□□□□ 0.22
TRIM40-208ENST00000489892 KIAA1210Q9ULL0 1709 aa16.43■□□□□ 0.22
TRIM40-208ENST00000489892 HDGFP51858 240 aaKnown RBP16.43■□□□□ 0.22
TRIM40-208ENST00000489892 NBPF8Q3BBV2 869 aa16.43■□□□□ 0.22
TRIM40-208ENST00000489892 TMEM131LA2VDJ0 1609 aa16.43■□□□□ 0.22
TRIM40-208ENST00000489892 ZFYVE9O95405 1425 aa16.43■□□□□ 0.22
TRIM40-208ENST00000489892 ROCK2O75116 1388 aaKnown RBP16.42■□□□□ 0.22
TRIM40-208ENST00000489892 LAMC1P11047 1609 aa16.42■□□□□ 0.22
TRIM40-208ENST00000489892 POLR1AO95602 1720 aaPredicted RBP16.42■□□□□ 0.22
TRIM40-208ENST00000489892 TRPM1Q7Z4N2 1603 aa16.41■□□□□ 0.22
TRIM40-208ENST00000489892 PPLO60437 1756 aa16.41■□□□□ 0.22
TRIM40-208ENST00000489892 NRXN1Q9ULB1 1477 aa16.41■□□□□ 0.22
TRIM40-208ENST00000489892 GPRASP1Q5JY77 1395 aa16.4■□□□□ 0.22
TRIM40-208ENST00000489892 CENPBP07199 599 aaPredicted RBP16.4■□□□□ 0.22
TRIM40-208ENST00000489892 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.39■□□□□ 0.21
TRIM40-208ENST00000489892 CARD11Q9BXL7 1154 aa16.39■□□□□ 0.21
TRIM40-208ENST00000489892 NEXMIFQ5QGS0 1516 aa16.39■□□□□ 0.21
TRIM40-208ENST00000489892 RGS17Q9UGC6 210 aaPredicted RBP16.36■□□□□ 0.21
TRIM40-208ENST00000489892 USP47Q96K76 1375 aa16.36■□□□□ 0.21
TRIM40-208ENST00000489892 PIK3C2GO75747 1445 aa16.36■□□□□ 0.21
TRIM40-208ENST00000489892 EIF3AQ14152 1382 aaKnown RBP16.35■□□□□ 0.21
TRIM40-208ENST00000489892 SLC24A1O60721 1099 aa16.34■□□□□ 0.21
TRIM40-208ENST00000489892 SETBP1Q9Y6X0 1596 aa16.34■□□□□ 0.21
TRIM40-208ENST00000489892 MYO5BQ9ULV0 1848 aa16.33■□□□□ 0.21
TRIM40-208ENST00000489892 SCAF1Q9H7N4 1312 aaKnown RBP16.33■□□□□ 0.2
TRIM40-208ENST00000489892 RIMS2Q9UQ26 1411 aa16.33■□□□□ 0.2
TRIM40-208ENST00000489892 UBR1Q8IWV7 1749 aa16.33■□□□□ 0.2
TRIM40-208ENST00000489892 HSPA5P11021 654 aaKnown RBP16.32■□□□□ 0.2
TRIM40-208ENST00000489892 CPS1P31327 1500 aa16.32■□□□□ 0.2
TRIM40-208ENST00000489892 PIP4K2BP78356 416 aa16.32■□□□□ 0.2
TRIM40-208ENST00000489892 ADGRF5Q8IZF2 1346 aa16.32■□□□□ 0.2
TRIM40-208ENST00000489892 SCAF11Q99590 1463 aaKnown RBP16.31■□□□□ 0.2
TRIM40-208ENST00000489892 THEMISQ8N1K5 641 aaPredicted RBP16.31■□□□□ 0.2
TRIM40-208ENST00000489892 TMEM2Q9UHN6 1383 aa16.3■□□□□ 0.2
TRIM40-208ENST00000489892 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
TRIM40-208ENST00000489892 C14orf93Q9H972 538 aaKnown RBP16.3■□□□□ 0.2
TRIM40-208ENST00000489892 EID1Q9Y6B2 187 aa16.29■□□□□ 0.2
TRIM40-208ENST00000489892 SLIT1O75093 1534 aa16.27■□□□□ 0.2
TRIM40-208ENST00000489892 IQGAP1P46940 1657 aa16.27■□□□□ 0.19
TRIM40-208ENST00000489892 TOM1O60784 492 aa16.26■□□□□ 0.19
TRIM40-208ENST00000489892 NBPF1Q3BBV0 1214 aa16.26■□□□□ 0.19
TRIM40-208ENST00000489892 ARHGAP23Q9P227 1491 aa16.25■□□□□ 0.19
TRIM40-208ENST00000489892 CFAP70Q5T0N1 1121 aa16.25■□□□□ 0.19
TRIM40-208ENST00000489892 NPHP4O75161 1426 aaPredicted RBP16.25■□□□□ 0.19
TRIM40-208ENST00000489892 PLEKHG1Q9ULL1 1385 aa16.23■□□□□ 0.19
TRIM40-208ENST00000489892 MED14O60244 1454 aa16.22■□□□□ 0.19
TRIM40-208ENST00000489892 ADGRB1O14514 1584 aa16.22■□□□□ 0.19
TRIM40-208ENST00000489892 CDCA8Q53HL2 280 aa16.22■□□□□ 0.19
TRIM40-208ENST00000489892 ST20-MTHFSA0A0A6YYL1 179 aa16.21■□□□□ 0.19
TRIM40-208ENST00000489892 ALKQ9UM73 1620 aa16.2■□□□□ 0.18
TRIM40-208ENST00000489892 NUTM2DQ5VT03 806 aaPredicted RBP16.2■□□□□ 0.18
TRIM40-208ENST00000489892 TXNDC2Q86VQ3 553 aa16.2■□□□□ 0.18
TRIM40-208ENST00000489892 SBNO2Q9Y2G9 1366 aa16.2■□□□□ 0.18
TRIM40-208ENST00000489892 SETD1AO15047 1707 aaKnown RBP16.19■□□□□ 0.18
TRIM40-208ENST00000489892 DIP2AQ14689 1571 aa16.19■□□□□ 0.18
TRIM40-208ENST00000489892 CCDC7Q96M83 1385 aa16.19■□□□□ 0.18
TRIM40-208ENST00000489892 TMF1P82094 1093 aa16.19■□□□□ 0.18
TRIM40-208ENST00000489892 POTEAQ6S8J7 498 aa16.19■□□□□ 0.18
TRIM40-208ENST00000489892 HIRIP3Q9BW71 556 aaPredicted RBP16.18■□□□□ 0.18
TRIM40-208ENST00000489892 BCANQ96GW7 911 aa16.17■□□□□ 0.18
TRIM40-208ENST00000489892 CENPJQ9HC77 1338 aaPredicted RBP16.17■□□□□ 0.18
TRIM40-208ENST00000489892 YTHDC2Q9H6S0 1430 aaKnown RBP16.16■□□□□ 0.18
TRIM40-208ENST00000489892 SRCAPQ6ZRS2 3230 aa16.16■□□□□ 0.18
TRIM40-208ENST00000489892 WASHC2AQ641Q2 1341 aa16.16■□□□□ 0.18
TRIM40-208ENST00000489892 LRPPRCP42704 1394 aaKnown RBP16.15■□□□□ 0.18
TRIM40-208ENST00000489892 DLC1Q96QB1 1528 aa16.15■□□□□ 0.18
TRIM40-208ENST00000489892 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
TRIM40-208ENST00000489892 STRCP1A6NGW2 1772 aa16.15■□□□□ 0.18
TRIM40-208ENST00000489892 KIF7Q2M1P5 1343 aa16.15■□□□□ 0.18
TRIM40-208ENST00000489892 NRXN3Q9Y4C0 1643 aa16.14■□□□□ 0.17
TRIM40-208ENST00000489892 TESK2Q96S53 571 aa16.13■□□□□ 0.17
TRIM40-208ENST00000489892 ASXL1Q8IXJ9 1541 aa16.13■□□□□ 0.17
TRIM40-208ENST00000489892 ABCC11Q96J66 1382 aa16.13■□□□□ 0.17
TRIM40-208ENST00000489892 PIK3R4Q99570 1358 aa16.13■□□□□ 0.17
TRIM40-208ENST00000489892 TMEM132EQ6IEE7 984 aa16.12■□□□□ 0.17
TRIM40-208ENST00000489892 TRAK1Q9UPV9 953 aa16.12■□□□□ 0.17
TRIM40-208ENST00000489892 TBX22Q9Y458 520 aa16.12■□□□□ 0.17
TRIM40-208ENST00000489892 LRRC7Q96NW7 1537 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms